# n_stages must be greater than 0 testthat::expect_error( suppressWarnings(random_mpm( n_stages = -1, fecundity = 20, archetype = 1, split = FALSE )) ) # n_stages must be integer testthat::expect_error( suppressWarnings(random_mpm( n_stages = 3.5, fecundity = 20, archetype = 1, split = FALSE )) ) # fecundity must be numeric testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = "text", archetype = 1, split = FALSE )) ) # fecundity must be of length 1 or n_stages testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = c(12, 5), archetype = 1, split = FALSE )) ) # Split must be logical testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = 5, archetype = 1, split = "text" )) ) # Archetype is an integer between 1 and 4 testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = 5, archetype = 0, split = FALSE )) ) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = 5, archetype = 5, split = FALSE )) ) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 4, fecundity = 5, archetype = 1.5, split = FALSE )) ) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 2, fecundity = 5, archetype = 3, split = FALSE )) ) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 2, fecundity = 5, archetype = 4, split = FALSE )) ) # Check that output is a matrix testthat::expect_true( is.matrix(suppressWarnings(random_mpm( n_stages = 4, fecundity = 5, archetype = 1, split = FALSE ))) ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 1, split = TRUE )) testthat::expect_true( inherits(x, "list") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 2, split = TRUE )) testthat::expect_true( inherits(x, "list") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 3, split = TRUE )) testthat::expect_true( inherits(x, "list") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 4, split = TRUE )) testthat::expect_true( inherits(x, "list") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 1, split = FALSE )) testthat::expect_true( inherits(x, "matrix") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 2, split = FALSE )) testthat::expect_true( inherits(x, "matrix") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 3, split = FALSE )) testthat::expect_true( inherits(x, "matrix") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = 20, archetype = 4, split = FALSE )) testthat::expect_true( inherits(x, "matrix") ) x <- suppressWarnings(random_mpm( n_stages = 4, fecundity = c(0, 2, 10, 20), archetype = 4, split = FALSE )) testthat::expect_true( inherits(x, "matrix") ) fec_mat <- matrix(c( 0, 1, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 2, fecundity = fec_mat, archetype = 1, split = FALSE )) ) # Lower limit to fecundity fec_mat_lower <- matrix(c( 0, 1, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Upper limit to fecundity fec_mat_upper <- matrix(c( 0, 5, 100, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Place the two matrices in a list fec_mats <- list(fec_mat_lower, fec_mat_upper) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 2, fecundity = fec_mats, archetype = 1, split = FALSE )) ) fec_mat <- matrix(c( 0, -1, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mat, archetype = 1, split = FALSE )) ) # Lower limit to fecundity fec_mat_lower <- matrix(c( 0, 5, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Upper limit to fecundity fec_mat_upper <- matrix(c( 0, 1, 100, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Place the two matrices in a list fec_mats <- list(fec_mat_lower, fec_mat_upper) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mats, archetype = 1, split = FALSE )) ) # Check bounds of fecundity matrices # Lower limit to fecundity fec_mat_lower <- matrix(c( 0, 5, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Upper limit to fecundity fec_mat_upper <- matrix(c( 0, 1, 100, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Place the two matrices in a list fec_mats <- list(fec_mat_lower, fec_mat_upper) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mats, archetype = 1, split = FALSE )) ) # Lower limit to fecundity fec_mat_lower <- matrix(c( 0, 5, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Upper limit to fecundity fec_mat_upper <- matrix(c( 0, 1, 100, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Place the two matrices in a list fec_mats <- list(fec_mat_lower, fec_mat_upper, fec_mat_upper) testthat::expect_error( suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mats, archetype = 1, split = FALSE )) ) # Lower limit to fecundity fec_mat_lower <- matrix(c( 0, 5, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Upper limit to fecundity fec_mat_upper <- matrix(c( 0, 10, 100, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) # Place the two matrices in a list fec_mats <- list(fec_mat_lower, fec_mat_upper) temp <- suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mats, archetype = 1, split = FALSE )) testthat::expect_true(inherits(temp, "matrix")) fec_mat <- matrix(c( 0, 5, 70, 0, 0, 0, 0, 0, 0 ), ncol = 3, byrow = TRUE) temp <- suppressWarnings(random_mpm( n_stages = 3, fecundity = fec_mat, archetype = 1, split = FALSE )) testthat::expect_true(inherits(temp, "matrix"))