downloading reverse dependencies ... downloading bujar_0.2-11.tar.gz ... ok downloading irboost_0.1-1.3.tar.gz ... ok downloading nbfar_0.1.tar.gz ... ok downloading NBtsVarSel_1.0.tar.gz ... ok installing dependencies ‘bst’, ‘mpath’, ‘rrpack’, ‘WeightSVM’, ‘zic’ begin installing package ‘bst’ begin installing package ‘WeightSVM’ begin installing package ‘zic’ begin installing package ‘rrpack’ * installing *source* package ‘WeightSVM’ ... ** package ‘WeightSVM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpL8RCRX/R.INSTALL1b23c5891f832/WeightSVM/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rsvm.c -o Rsvm.o Rsvm.c: In function ‘svmtrain’: Rsvm.c:276:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 276 | else | ^~~~ Rsvm.c:278:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 278 | prob.W = W; | ^~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c svm.cpp -o svm.o svm.cpp: In function ‘void solve_nu_svc(const svm_problem*, const svm_parameter*, double*, Solver::SolutionInfo*)’: svm.cpp:1509:17: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1509 | else | ^~~~ svm.cpp:1511:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1511 | C[i] = prob->W[i]; | ^ svm.cpp: In function ‘svm_model* svm_train(const svm_problem*, const svm_parameter*)’: svm.cpp:42:38: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 42 | #define Malloc(type,n) (type *)malloc((n)*sizeof(type)) | ~~~~~~^~~~~~~~~~~~~~~~~~ svm.cpp:2391:34: note: in expansion of macro ‘Malloc’ 2391 | model->sv_coef = Malloc(double *,nr_class-1); | ^~~~~~ In file included from /usr/include/c++/13/cstdlib:79, from /home/hornik/tmp/R-d-gcc-13/include/R.h:39, from svm.cpp:1: /usr/include/stdlib.h:553:14: note: in a call to allocation function ‘void* malloc(size_t)’ declared here 553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o WeightSVM.so Rsvm.o init.o svm.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpL8RCRX/R.INSTALL1b23c5891f832/WeightSVM/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-WeightSVM/00new/WeightSVM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WeightSVM) * installing *source* package ‘bst’ ... ** package ‘bst’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bst) begin installing package ‘mpath’ * installing *source* package ‘mpath’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuiSQ0A/R.INSTALL1b2e67673e0cb/mpath/src' gfortran-13 -fpic -g -O2 -Wall -mtune=native -c activeset.f -o activeset.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cfuns.c -o cfuns.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_g.f -o compute_g.o compute_g.f:41:14: 41 | if(z(i) .LE. s1)then | ^ Warning: ‘s1’ may be used uninitialized [-Wmaybe-uninitialized] compute_g.f:7:40: 7 | double precision PI, s, s1, s2, z(n), delta, gval(n) | ^ note: ‘s1’ was declared here gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_h.f -o compute_h.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_u.f -o compute_u.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_v.f -o compute_v.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_wt3.f -o compute_wt3.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c compute_z.f -o compute_z.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dnbinom.f -o dnbinom.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dpois.f -o dpois.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c factorial.f -o factorial.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c gfunc.f -o gfunc.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c glmreg_fit_fortran.f -o glmreg_fit_fortran.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c glmregnb_fortran.f -o glmregnb_fortran.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c gradient.f -o gradient.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c init.f -o init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c irglmreg_ad.f -o irglmreg_ad.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c irglmreg_fortran.f -o irglmreg_fortran.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c irglmreg_onelambda.f -o irglmreg_onelambda.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c lmax_zipath.f -o lmax_zipath.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c lmnetGLM.f -o lmnetGLM.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c lmnetGaussian.f -o lmnetGaussian.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c loss.f -o loss.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c loss2.f -o loss2.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c loss2_ccsvm.f -o loss2_ccsvm.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c loss3.f -o loss3.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c midloop.f -o midloop.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c midloopGLM.f -o midloopGLM.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mpath_init.c -o mpath_init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mutil.f -o mutil.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c nclreg_ad.f -o nclreg_ad.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c nclreg_fortran.f -o nclreg_fortran.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c nclreg_onelambda.f -o nclreg_onelambda.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c outloop.f -o outloop.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c outprod.f -o outprod.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c theta_ml.f -o theta_ml.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c update_wt.f -o update_wt.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c update_wt_ccsvm.f -o update_wt_ccsvm.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c zi_onelambda.f -o zi_onelambda.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ziloss.f -o ziloss.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c zipath_active.f -o zipath_active.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c zipath_nonactive.f -o zipath_nonactive.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o mpath.so activeset.o cfuns.o compute_g.o compute_h.o compute_u.o compute_v.o compute_wt3.o compute_z.o dnbinom.o dpois.o factorial.o gfunc.o glmreg_fit_fortran.o glmregnb_fortran.o gradient.o init.o irglmreg_ad.o irglmreg_fortran.o irglmreg_onelambda.o lmax_zipath.o lmnetGLM.o lmnetGaussian.o loss.o loss2.o loss2_ccsvm.o loss3.o midloop.o midloopGLM.o mpath_init.o mutil.o nclreg_ad.o nclreg_fortran.o nclreg_onelambda.o outloop.o outprod.o theta_ml.o update_wt.o update_wt_ccsvm.o zi_onelambda.o ziloss.o zipath_active.o zipath_nonactive.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuiSQ0A/R.INSTALL1b2e67673e0cb/mpath/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-mpath/00new/mpath/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mpath) * installing *source* package ‘zic’ ... ** package ‘zic’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6CJ5MT/R.INSTALL1b240336882dd/zic/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_R.cc -o random_R.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spikeslab.cc -o spikeslab.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c zic_R_interface.cc -o zic_R_interface.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c zicmodel.cc -o zicmodel.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o zic.so random_R.o registerDynamicSymbol.o spikeslab.o zic_R_interface.o zicmodel.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6CJ5MT/R.INSTALL1b240336882dd/zic/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-zic/00new/zic/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zic) * installing *source* package ‘rrpack’ ... ** package ‘rrpack’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWV6K8/R.INSTALL1b23e1d734506/rrpack/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRRR.c -o RRRR.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lasso_shooting.cpp -o lasso_shooting.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c penreg.cpp -o penreg.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rrpack_init.c -o rrpack_init.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sofar.cpp -o sofar.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c srrr.cpp -o srrr.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c surr_fit.cpp -o surr_fit.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o rrpack.so RRRR.o RcppExports.o lasso_shooting.o penreg.o rrpack_init.o sofar.o srrr.o surr_fit.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWV6K8/R.INSTALL1b23e1d734506/rrpack/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-rrpack/00new/rrpack/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rrpack) checking mpath_0.4-2.25.tar.gz ... checking bujar_0.2-11.tar.gz ... checking irboost_0.1-1.3.tar.gz ... checking nbfar_0.1.tar.gz ... checking NBtsVarSel_1.0.tar.gz ... Depends: Package: mpath Depends: R (>= 3.5.0), methods, glmnet, pamr Imports: MASS, pscl, numDeriv, foreach, doParallel, bst, WeightSVM Timings: user system elapsed mpath 81.226 8.374 91.33 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 2 Check results summary: mpath ... OK rdepends_bujar ... OK rdepends_irboost ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_nbfar ... NOTE * checking C++ specification ... NOTE rdepends_NBtsVarSel ... OK