* using log directory 'd:/RCompile/CRANincoming/R-devel/mpactr.Rcheck'
* using R Under development (unstable) (2024-09-02 r87090 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mpactr/DESCRIPTION' ... OK
* this is package 'mpactr' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Patrick Schloss <pschloss@umich.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  Balunas (11:245)
  Metabolomics (11:139)
  Preprocessed (2:22)
  insource (11:744)
  pre (11:48, 11:368)
  preprocessing (11:451)

Found the following (possibly) invalid DOIs:
  DOI: doi.org/10.1021/acs.analchem.2c04632
    From: DESCRIPTION
          man/mpactr-package.Rd
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mpactr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'Pineapple.png' 'logo.ai' 'pineapple.jpeg'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [22s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [132s] OK
  Running 'testthat.R' [132s]
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs