context("search") s_cove = lsp_search( landform_ext, landform, type = "cove", dist_fun = "jensen-shannon", threshold = 0.9 ) s_cocove = lsp_search( c(landcover_ext, landform_ext), c(landcover, landform), type = "cocove", ordered = TRUE, dist_fun = "jensen-shannon", threshold = 0.9 ) s_wecove = lsp_search( c(landform_ext, random_ndvi_ext), c(landform, random_ndvi), type = "wecove", dist_fun = "jensen-shannon", threshold = 0.9 ) s_incove = lsp_search( c(landcover_ext, landform_ext), c(landcover, landform), type = "incove", dist_fun = "jensen-shannon", threshold = 0.9 ) s_incovewindow = lsp_search( c(landcover_ext, landform_ext), c(landcover, landform), type = "incove", dist_fun = "jensen-shannon", threshold = 0.9, window = ecoregions["id"] ) s_cove_motiel = lsp_search( landform_ext, landform, type = "cove", dist_fun = "jensen-shannon", threshold = 0.5, window = 250 ) s_cove_proxy = lsp_search( landform_ext, landform_p, type = "cove", dist_fun = "jensen-shannon", threshold = 0.5, window = 250 ) s_cove_window = lsp_search( landform_ext, landform, type = "cove", dist_fun = "jensen-shannon", threshold = 1, window = ecoregions["id"] ) test_that("tests simple search results", { expect_equivalent(unlist(unique(s_cove)), c(1, 0.0982, 0.4523), tolerance = .001) expect_equivalent(unlist(unique(s_cocove)), c(1, 0.0555, 0.453), tolerance = .001) expect_equivalent(unlist(unique(s_wecove)), c(1, 0.0982, 0.451), tolerance = .001) expect_equivalent(unlist(unique(s_incove)), c(1, 0.0982, 0.313), tolerance = .001) }) test_that("tests motifel search results", { expect_equal(sum(is.na(s_cove_motiel$dist)), 2) expect_equivalent(min(s_cove_motiel$dist, na.rm = TRUE), 0.006, tolerance = .001) expect_equivalent(mean(s_cove_motiel$dist, na.rm = TRUE), 0.589, tolerance = .001) expect_equivalent(max(s_cove_motiel$dist, na.rm = TRUE), 1, tolerance = .001) }) test_that("tests proxy search results", { expect_equal(s_cove_proxy, s_cove_motiel) }) test_that("tests window search results", { expect_equal(sort(unique(c(s_cove_window$id))), c(5, 6, 11, 16, 17)) expect_equivalent(min(s_cove_window$dist, na.rm = TRUE), 0.00029, tolerance = .001) expect_equal(mean(c(s_incovewindow$dist), na.rm = TRUE), 0.4, tolerance = .001) })