* installing *source* package ‘monolix2rx’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.2 (1)’ using C++ compiler: ‘Debian clang version 19.1.2 (1)’ clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c dataSettings.c -o dataSettings.o In file included from dataSettings.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c equation.c -o equation.o In file included from equation.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o init.c:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c longDef.c -o longDef.o In file included from longDef.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c longOutput.c -o longOutput.o In file included from longOutput.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mem.c -o mem.o In file included from mem.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranContent.c -o mlxtranContent.o In file included from mlxtranContent.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranFileinfo.c -o mlxtranFileinfo.o In file included from mlxtranFileinfo.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranFit.c -o mlxtranFit.o In file included from mlxtranFit.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranInd.c -o mlxtranInd.o In file included from mlxtranInd.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranIndDefinition.c -o mlxtranIndDefinition.o In file included from mlxtranIndDefinition.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranOp.c -o mlxtranOp.o In file included from mlxtranOp.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranParameter.c -o mlxtranParameter.o In file included from mlxtranParameter.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mlxtranTask.c -o mlxtranTask.o In file included from mlxtranTask.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c sbuf.c -o sbuf.o sbuf.c:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c shared.c -o shared.o In file included from shared.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c summaryData.c -o summaryData.o In file included from summaryData.c:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parseSbuf.h:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c util.cpp -o util.o util.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o monolix2rx.so dataSettings.o equation.o init.o longDef.o longOutput.o mem.o mlxtranContent.o mlxtranFileinfo.o mlxtranFit.o mlxtranInd.o mlxtranIndDefinition.o mlxtranOp.o mlxtranParameter.o mlxtranTask.o sbuf.o shared.o summaryData.o util.o -L/home/hornik/tmp/R-d-clang-19/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/monolix2rx.Rcheck/00LOCK-monolix2rx/00new/monolix2rx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monolix2rx)