* using log directory 'd:/RCompile/CRANincoming/R-devel/monitOS.Rcheck' * using R Under development (unstable) (2023-10-24 r85407 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'monitOS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'monitOS' version '0.1.3' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Thibaud Coroller ' New submission The Title field should be in title case. Current version is: 'Monitoring overall survival in pivotal trials in indolent cancers' In title case that is: 'Monitoring Overall Survival in Pivotal Trials in Indolent Cancers' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .covrignore These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. CRAN-pack does not know about .covrignore * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'monitOS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: 'Thibaud Coroller ' Authors@R: 'Thibaud Coroller ' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE app_server: no visible binding for global variable 'Delta_null' app_server: no visible binding for global variable 'Delta_alt' app_server: no visible binding for global variable 'Positivity_Thres_Posterior' app_server: no visible binding for global variable 'Positivity_Thres_PredProb' app_server: no visible binding for global variable 'Events' app_server: no visible binding for global variable 'Positivity_Thres_HR' app_server: no visible binding for global variable 'OneSided_falsepos' app_server: no visible binding for global variable 'TwoSided_CI_level' app_server: no visible binding for global variable 'Power_Alt' app_server: no visible binding for global variable 'Power_Marg_Benefit' Undefined global functions or variables: Delta_alt Delta_null Events OneSided_falsepos Positivity_Thres_HR Positivity_Thres_Posterior Positivity_Thres_PredProb Power_Alt Power_Marg_Benefit TwoSided_CI_level * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking PDF version of manual ... [11s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character β (U+03B2) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character γ (U+03B3) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character β (U+03B2) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character γ (U+03B3) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character δ (U+03B4) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 4 NOTEs