* using log directory ‘/srv/hornik/tmp/CRAN_pretest/modelbased.Rcheck’
* using R Under development (unstable) (2025-01-27 r87654)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1+b1)
    Debian flang-new version 19.1.6 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘modelbased/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘modelbased’ version ‘0.9.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/8s] NOTE
Maintainer: ‘Dominique Makowski <dom.makowski@gmail.com>’

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘Remotes’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘modelbased’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/10s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [26s/12s] ERROR
  Running ‘testthat.R’ [26s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > #
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > library(testthat)
  > library(modelbased)
  > 
  > test_check("modelbased")
  Starting 2 test processes
  [ FAIL 4 | WARN 0 | SKIP 14 | PASS 155 ]
  
  ══ Skipped tests (14) ══════════════════════════════════════════════════════════
  • .Platform$OS.type == "windows" is not TRUE (1):
    'test-estimate_predicted.R:56:3'
  • On CRAN (10): 'test-brms-marginaleffects.R:1:1', 'test-brms.R:1:1',
    'test-estimate_contrasts.R:1:1', 'test-estimate_means.R:1:1',
    'test-estimate_means_counterfactuals.R:1:1',
    'test-estimate_means_mixed.R:1:1', 'test-get_marginaltrends.R:1:1',
    'test-glmmTMB.R:1:1', 'test-ordinal.R:1:1', 'test-predict-dpar.R:1:1'
  • On Linux (3): 'test-plot-facet.R:1:1', 'test-plot.R:1:1', 'test-print.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-attributes_estimatefun.R:42:3'): attributes_means, contrasts ───
  Error in `sanitize_hypothesis_formula(hypothesis)`: Assertion on 'Right-hand side of `hypothesis` formula' failed: Must be element of set {'reference','sequential','meandev'}, but is 'pairwise'.
  Backtrace:
       ▆
    1. ├─base::suppressMessages(estimate_contrasts(model, "Species", backend = "marginaleffects")) at test-attributes_estimatefun.R:42:3
    2. │ └─base::withCallingHandlers(...)
    3. └─modelbased::estimate_contrasts(model, "Species", backend = "marginaleffects")
    4.   └─modelbased::get_marginalcontrasts(...)
    5.     └─modelbased::estimate_means(...)
    6.       └─modelbased::get_marginalmeans(...)
    7.         ├─base::suppressWarnings(...)
    8.         │ └─base::withCallingHandlers(...)
    9.         ├─base::do.call(marginaleffects::avg_predictions, fun_args)
   10.         └─marginaleffects (local) `<fn>`(...)
   11.           └─marginaleffects::predictions(...)
   12.             └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
   13.               └─marginaleffects:::sanitize_hypothesis_formula(hypothesis)
   14.                 └─checkmate::assert_choice(...)
   15.                   └─checkmate::makeAssertion(x, res, .var.name, add)
   16.                     └─checkmate:::mstop(...)
  ── Failure ('test-attributes_estimatefun.R:68:3'): attributes_means, slopes ────
  Names of attributes(estim) ('names', 'class', 'row.names', 'trend', 'comparison', 'coef_name', 'table_title', 'table_footer', 'model', 'response', 'ci') don't match 'names', 'class', 'row.names', 'trend', 'comparison', 'coef_name', 'slope', 'table_title', 'table_footer', 'model', 'response', 'ci'
  ── Error ('test-mgcv.R:22:3'): estimate_contrasts - mgcv gam ───────────────────
  Error in `sanitize_hypothesis_formula(hypothesis)`: Assertion on 'Right-hand side of `hypothesis` formula' failed: Must be element of set {'reference','sequential','meandev'}, but is 'pairwise'.
  Backtrace:
       ▆
    1. ├─base::suppressMessages(estimate_contrasts(model, backend = "marginaleffects")) at test-mgcv.R:22:3
    2. │ └─base::withCallingHandlers(...)
    3. └─modelbased::estimate_contrasts(model, backend = "marginaleffects")
    4.   └─modelbased::get_marginalcontrasts(...)
    5.     └─modelbased::estimate_means(...)
    6.       └─modelbased::get_marginalmeans(...)
    7.         ├─base::suppressWarnings(...)
    8.         │ └─base::withCallingHandlers(...)
    9.         ├─base::do.call(marginaleffects::avg_predictions, fun_args)
   10.         └─marginaleffects (local) `<fn>`(...)
   11.           └─marginaleffects::predictions(...)
   12.             └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
   13.               └─marginaleffects:::sanitize_hypothesis_formula(hypothesis)
   14.                 └─checkmate::assert_choice(...)
   15.                   └─checkmate::makeAssertion(x, res, .var.name, add)
   16.                     └─checkmate:::mstop(...)
  ── Error ('test-verbose.R:11:3'): verbose ──────────────────────────────────────
  Error in `sanitize_hypothesis_formula(hypothesis)`: Assertion on 'Right-hand side of `hypothesis` formula' failed: Must be element of set {'reference','sequential','meandev'}, but is 'pairwise'.
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(...) at test-verbose.R:11:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. └─modelbased::estimate_contrasts(...)
   10.   └─modelbased::get_marginalcontrasts(...)
   11.     └─modelbased::estimate_means(...)
   12.       └─modelbased::get_marginalmeans(...)
   13.         ├─base::suppressWarnings(...)
   14.         │ └─base::withCallingHandlers(...)
   15.         ├─base::do.call(marginaleffects::avg_predictions, fun_args)
   16.         └─marginaleffects (local) `<fn>`(...)
   17.           └─marginaleffects::predictions(...)
   18.             └─marginaleffects:::sanitize_hypothesis(hypothesis, ...)
   19.               └─marginaleffects:::sanitize_hypothesis_formula(hypothesis)
   20.                 └─checkmate::assert_choice(...)
   21.                   └─checkmate::makeAssertion(x, res, .var.name, add)
   22.                     └─checkmate:::mstop(...)
  
  [ FAIL 4 | WARN 0 | SKIP 14 | PASS 155 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE