* using log directory ‘/srv/hornik/tmp/CRAN/mmrm.Rcheck’
* using R Under development (unstable) (2024-01-24 r85824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘mmrm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mmrm’ version ‘0.3.9’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Daniel Sabanes Bove <daniel.sabanes_bove@roche.com>’

Days since last update: 1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mmrm’ can be installed ... [217s/217s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (5)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [22s/22s] ERROR
  Running ‘testthat.R’ [22s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > pkg_name <- "mmrm"
  > library(pkg_name, character.only = TRUE)
  > testthat::test_check(pkg_name)
  Loading required package: carData
  -- Model Registration -------------------------------------------- mmrm 0.3.9 --
  v mmrm::mmrm()
  [ FAIL 1 | WARN 0 | SKIP 61 | PASS 1784 ]
  
  ══ Skipped tests (61) ══════════════════════════════════════════════════════════
  • On CRAN (42): 'test-between-within.R:29:3', 'test-car.R:35:3',
    'test-empirical.R:6:3', 'test-empirical.R:12:3', 'test-empirical.R:18:3',
    'test-fit.R:257:3', 'test-fit.R:353:3', 'test-kenwardroger.R:4:3',
    'test-kenwardroger.R:9:3', 'test-kenwardroger.R:14:3',
    'test-kenwardroger.R:19:3', 'test-kenwardroger.R:24:3',
    'test-kenwardroger.R:29:3', 'test-kenwardroger.R:34:3',
    'test-kenwardroger.R:39:3', 'test-kenwardroger.R:44:3',
    'test-kenwardroger.R:49:3', 'test-kenwardroger.R:54:3',
    'test-kenwardroger.R:59:3', 'test-kenwardroger.R:64:3',
    'test-kenwardroger.R:69:3', 'test-kenwardroger.R:74:3',
    'test-kenwardroger.R:79:3', 'test-kenwardroger.R:84:3',
    'test-kenwardroger.R:89:3', 'test-kenwardroger.R:98:3',
    'test-kenwardroger.R:107:3', 'test-kenwardroger.R:348:3',
    'test-kenwardroger.R:356:3', 'test-kenwardroger.R:367:3',
    'test-kenwardroger.R:377:3', 'test-kenwardroger.R:389:3',
    'test-mmrm-methods.R:66:3', 'test-mmrm-methods.R:79:3',
    'test-mmrm-methods.R:85:3', 'test-mmrm-methods.R:91:3',
    'test-mmrm-methods.R:97:3', 'test-mmrm-methods.R:104:3',
    'test-testing.R:78:3', 'test-testing.R:93:3', 'test-tmb-methods.R:711:3',
    'test-tmb-methods.R:718:3'
  • On R-devel Linux system with non-standard clang (19):
    'test-between-within.R:124:3', 'test-between-within.R:137:3',
    'test-between-within.R:150:3', 'test-between-within.R:163:3',
    'test-emmeans.R:85:3', 'test-emmeans.R:119:3', 'test-emmeans.R:141:3',
    'test-fit.R:206:3', 'test-fit.R:218:3', 'test-satterthwaite.R:137:3',
    'test-satterthwaite.R:160:3', 'test-tmb-methods.R:724:3',
    'test-tmb-methods.R:781:3', 'test-tmb-methods.R:834:3',
    'test-tmb-methods.R:847:3', 'test-tmb-methods.R:905:3',
    'test-tmb-methods.R:945:3', 'test-tmb-methods.R:981:3',
    'test-tmb-methods.R:1121:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-skipping.R:26:3'): is_using_clang gives the same information as R_compiled_by in recent R versions ──
  Error in `.make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version)`: invalid non-character version specification 'x' (type: double)
  Backtrace:
      ▆
   1. ├─testthat::skip_if(getRversion() < 4.3) at test-skipping.R:26:3
   2. │ └─base::isTRUE(condition)
   3. └─base::Ops.numeric_version(getRversion(), 4.3)
   4.   └─base::as.numeric_version(e2)
   5.     └─base::numeric_version(x)
   6.       └─base::.make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version)
  
  [ FAIL 1 | WARN 0 | SKIP 61 | PASS 1784 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [19s/19s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE