* installing *source* package ‘mmrm’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (16)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c empirical.cpp -o empirical.o In file included from empirical.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from empirical.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from empirical.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from empirical.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c exports.cpp -o exports.o In file included from exports.cpp:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from exports.cpp:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from exports.cpp:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from exports.cpp:2: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from exports.cpp:2: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c jacobian.cpp -o jacobian.o In file included from jacobian.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from jacobian.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from jacobian.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from jacobian.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c kr_comp.cpp -o kr_comp.o In file included from kr_comp.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from kr_comp.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from kr_comp.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from kr_comp.cpp:1: In file included from ./derivatives.h:4: In file included from ./chol_cache.h:4: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c mmrm.cpp -o mmrm.o In file included from mmrm.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from mmrm.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from mmrm.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from mmrm.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c predict.cpp -o predict.o In file included from predict.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from predict.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from predict.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from predict.cpp:1: In file included from ./covariance.h:4: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c test-chol_cache.cpp -o test-chol_cache.o In file included from test-chol_cache.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from test-chol_cache.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from test-chol_cache.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from test-chol_cache.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c test-covariance.cpp -o test-covariance.o In file included from test-covariance.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from test-covariance.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from test-covariance.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from test-covariance.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c test-derivatives.cpp -o test-derivatives.o In file included from test-derivatives.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from test-derivatives.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from test-derivatives.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from test-derivatives.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c test-utils.cpp -o test-utils.o In file included from test-utils.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from test-utils.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from test-utils.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from test-utils.cpp:1: In file included from ./testthat-helpers.h:5: In file included from ./utils.h:5: In file included from ./tmb_includes.h:57: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D TMBAD_FRAMEWORK -D EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fpic -g -O3 -Wall -pedantic -c tmb.cpp -o tmb.o In file included from tmb.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from tmb.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:87: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from tmb.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/ode_gear.hpp:489:6: warning: variable 'sign' set but not used [-Wunused-but-set-variable] int sign; ^ In file included from tmb.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:112: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/cppad.hpp:39: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/cppad/romberg_mul.hpp:277:10: warning: variable 'pow2' set but not used [-Wunused-but-set-variable] size_t pow2 = 1; ^ In file included from tmb.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMB.hpp:123: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/TMB/include/TMBad/TMBad.cpp:4324:10: warning: variable 'total' set but not used [-Wunused-but-set-variable] size_t total = 0; ^ 6 warnings generated. clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o mmrm.so empirical.o exports.o jacobian.o kr_comp.o mmrm.o predict.o test-chol_cache.o test-covariance.o test-derivatives.o test-runner.o test-utils.o tmb.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /srv/hornik/tmp/CRAN/mmrm.Rcheck/00LOCK-mmrm/00new/mmrm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mmrm)