* using log directory ‘/srv/hornik/tmp/CRAN/mmrm.Rcheck’
* using R Under development (unstable) (2023-09-19 r85177)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-3) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘mmrm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mmrm’ version ‘0.3.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Daniel Sabanes Bove <daniel.sabanes_bove@roche.com>’

Possibly misspelled words in DESCRIPTION:
  al (30:55)
  et (30:52)

Size of tarball: 5427835 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mmrm’ can be installed ... [213s/213s] OK
* used C++ compiler: ‘Debian clang version 16.0.6 (15)’
* checking C++ specification ... NOTE
  Specified C++14: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
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* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
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* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [19s/19s] ERROR
  Running ‘testthat.R’ [19s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > pkg_name <- "mmrm"
  > library(pkg_name, character.only = TRUE)
  > testthat::test_check(pkg_name)
  -- Model Registration -------------------------------------------- mmrm 0.3.2 --
  v mmrm::mmrm()
  [ FAIL 2 | WARN 0 | SKIP 42 | PASS 1832 ]
  
  ══ Skipped tests (42) ══════════════════════════════════════════════════════════
  • On CRAN (42): 'test-between-within.R:29:3', 'test-empirical.R:6:3',
    'test-empirical.R:12:3', 'test-empirical.R:18:3', 'test-fit.R:214:3',
    'test-fit.R:265:3', 'test-fit.R:361:3', 'test-kenwardroger.R:4:3',
    'test-kenwardroger.R:9:3', 'test-kenwardroger.R:14:3',
    'test-kenwardroger.R:19:3', 'test-kenwardroger.R:24:3',
    'test-kenwardroger.R:29:3', 'test-kenwardroger.R:34:3',
    'test-kenwardroger.R:39:3', 'test-kenwardroger.R:44:3',
    'test-kenwardroger.R:49:3', 'test-kenwardroger.R:54:3',
    'test-kenwardroger.R:59:3', 'test-kenwardroger.R:64:3',
    'test-kenwardroger.R:69:3', 'test-kenwardroger.R:74:3',
    'test-kenwardroger.R:79:3', 'test-kenwardroger.R:84:3',
    'test-kenwardroger.R:89:3', 'test-kenwardroger.R:98:3',
    'test-kenwardroger.R:107:3', 'test-kenwardroger.R:348:3',
    'test-kenwardroger.R:356:3', 'test-kenwardroger.R:367:3',
    'test-kenwardroger.R:377:3', 'test-kenwardroger.R:389:3',
    'test-mmrm-methods.R:66:3', 'test-mmrm-methods.R:79:3',
    'test-mmrm-methods.R:85:3', 'test-mmrm-methods.R:91:3',
    'test-mmrm-methods.R:97:3', 'test-mmrm-methods.R:104:3',
    'test-testing.R:69:3', 'test-testing.R:84:3', 'test-tmb-methods.R:711:3',
    'test-tmb-methods.R:718:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fit.R:347:3'): mmrm falls back to other optimizers if default does not work ──
  Error in `mmrm(formula, fev_data, n_cores = 1L, optimizer_fun = c(fake = fake_optimizer, 
      h_get_optimizers("L-BFGS-B")))`: Chosen optimizers 'fake, L-BFGS-B' led to problems during model fit:
  1) Model convergence problem: NEW_X.
  Consider trying multiple or different optimizers.
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test-fit.R:347:2
   2. │ └─testthat:::expect_condition_matching(...)
   3. │   └─testthat:::quasi_capture(...)
   4. │     ├─testthat (local) .capture(...)
   5. │     │ └─base::withCallingHandlers(...)
   6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   7. └─mmrm::mmrm(...)
  ── Failure ('test-fit.R:378:3'): mmrm works for rank deficient original design matrix by default ──
  attr(result, "converged") is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 2 | WARN 0 | SKIP 42 | PASS 1832 ]
  Error: Test failures
  In addition: Warning message:
  In checkMatrixPackageVersion() : Package version inconsistency detected.
  TMB was built with Matrix version 1.6.1
  Current Matrix version is 1.6.1.1
  Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [20s/20s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs