* using log directory ‘/srv/hornik/tmp/CRAN/mmrm.Rcheck’
* using R Under development (unstable) (2024-06-24 r86824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘mmrm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mmrm’ version ‘0.3.12’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>’

New maintainer:
  Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>
Old maintainer(s):
  Daniel Sabanes Bove <daniel.sabanes_bove@roche.com>

Package has a VignetteBuilder field but no prebuilt vignette index.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mmrm’ can be installed ... [248s/248s] OK
* used C++ compiler: ‘Debian clang version 18.1.8 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] NOTE
h_mmrm_tmb_data: no visible global function definition for
  ‘complete.cases’
Undefined global functions or variables:
  complete.cases
Consider adding
  importFrom("stats", "complete.cases")
to your NAMESPACE file.
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘algorithm.Rmd’ ‘between_within.Rmd’ ‘coef_vcov.Rmd’ ‘covariance.Rmd’
  ‘empirical_wls.Rmd’ ‘hypothesis_testing.Rmd’ ‘introduction.Rmd’
  ‘kenward.Rmd’ ‘methodological_introduction.Rmd’
  ‘mmrm_review_methods.Rmd’ ‘mmrm_review_refs.bib’
  ‘package_structure.Rmd’ ‘predict.Rmd’ ‘satterthwaite.Rmd’
  ‘subsections/_intro-acknowledgments.Rmd’
  ‘subsections/_intro-customizations.Rmd’
  ‘subsections/_intro-getting_started.Rmd’
  ‘subsections/_intro-hypothesis_testing.Rmd’
  ‘subsections/_intro-lower_level.Rmd’
  ‘subsections/_intro-model_features.Rmd’
  ‘subsections/_intro-tidymodels.Rmd’
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [19s/19s] OK
  Running ‘testthat.R’ [19s/19s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... WARNING
Directory 'inst/doc' does not exist.
Package vignettes without corresponding single PDF/HTML:
  ‘algorithm.Rmd’
  ‘between_within.Rmd’
  ‘coef_vcov.Rmd’
  ‘covariance.Rmd’
  ‘empirical_wls.Rmd’
  ‘hypothesis_testing.Rmd’
  ‘introduction.Rmd’
  ‘kenward.Rmd’
  ‘methodological_introduction.Rmd’
  ‘mmrm_review_methods.Rmd’
  ‘package_structure.Rmd’
  ‘predict.Rmd’
  ‘satterthwaite.Rmd’
* checking re-building of vignette outputs ... [21s/21s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs