library("mlt") ### 10.1080/15598608.2013.772835 ### rho = exp(logrho) ### 1 = rho = exp(0) is identical to .Logistic lg <- mlt:::.GammaFrailty(logrho = 0) x <- -30:30 / 20 p <- 1:99 / 100 tol <- sqrt(.Machine$double.eps) stopifnot(max(abs(lg$p(x) - mlt:::.Logistic()$p(x))) < tol) stopifnot(max(abs(lg$d(x) - mlt:::.Logistic()$d(x))) < tol) stopifnot(max(abs(lg$dd(x) - mlt:::.Logistic()$dd(x))) < tol) stopifnot(max(abs(lg$ddd(x) - mlt:::.Logistic()$ddd(x))) < tol) stopifnot(max(abs(lg$dd2d(x) - mlt:::.Logistic()$dd2d(x))) < tol) stopifnot(max(abs(lg$q(p) - mlt:::.Logistic()$q(p))) < tol) ### 0 = rho = exp(-infty) is identical to .MinExtrVal tol <- (.Machine$double.eps)^(1 / 2.5) lg <- mlt:::.GammaFrailty(logrho = -18) stopifnot(max(abs(lg$p(x) - mlt:::.MinExtrVal()$p(x))) < tol) stopifnot(max(abs(lg$d(x) - mlt:::.MinExtrVal()$d(x))) < tol) stopifnot(max(abs(lg$dd(x) - mlt:::.MinExtrVal()$dd(x))) < tol) stopifnot(max(abs(lg$ddd(x) - mlt:::.MinExtrVal()$ddd(x))) < tol) stopifnot(max(abs(lg$dd2d(x) - mlt:::.MinExtrVal()$dd2d(x))) < tol) stopifnot(max(abs(lg$q(p) - mlt:::.MinExtrVal()$q(p))) < tol) ### logitalpha = logit(1) is identical to .MinExtrVal tol <- (.Machine$double.eps)^(1 / 2.5) lg <- mlt:::.PositiveStableFrailty(logitalpha = 50) stopifnot(max(abs(lg$p(x) - mlt:::.MinExtrVal()$p(x))) < tol) stopifnot(max(abs(lg$d(x) - mlt:::.MinExtrVal()$d(x))) < tol) stopifnot(max(abs(lg$dd(x) - mlt:::.MinExtrVal()$dd(x))) < tol) stopifnot(max(abs(lg$ddd(x) - mlt:::.MinExtrVal()$ddd(x))) < tol) stopifnot(max(abs(lg$dd2d(x) - mlt:::.MinExtrVal()$dd2d(x))) < tol) stopifnot(max(abs(lg$q(p) - mlt:::.MinExtrVal()$q(p))) < tol)