* using log directory ‘/srv/hornik/tmp/CRAN_pretest/mlt.docreg.Rcheck’ * using R Under development (unstable) (2024-11-18 r87347) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘mlt.docreg/DESCRIPTION’ ... OK * this is package ‘mlt.docreg’ version ‘1.1-10’ * checking CRAN incoming feasibility ... [4s/5s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘mlt.docreg’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [27s/27s] OK Running ‘AFT-Ex.R’ [2s/2s] Comparing ‘AFT-Ex.Rout’ to ‘AFT-Ex.Rout.save’ ... OK Running ‘GBSG2.R’ [1s/1s] Running ‘KM-Ex.R’ [1s/1s] Comparing ‘KM-Ex.Rout’ to ‘KM-Ex.Rout.save’ ... OK Running ‘faithful.R’ [2s/2s] Comparing ‘faithful.Rout’ to ‘faithful.Rout.save’ ... OK Running ‘orm-Ex.R’ [13s/13s] Comparing ‘orm-Ex.Rout’ to ‘orm-Ex.Rout.save’ ... OK Running ‘timedep_covar.R’ [5s/5s] Comparing ‘timedep_covar.Rout’ to ‘timedep_covar.Rout.save’ ... OK Running ‘truncreg-Ex.R’ [2s/2s] Comparing ‘truncreg-Ex.Rout’ to ‘truncreg-Ex.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [59s/60s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK