* using log directory ‘/srv/hornik/tmp/CRAN_pretest/mlspatial.Rcheck’
* using R Under development (unstable) (2025-07-08 r88392)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘mlspatial/DESCRIPTION’ ... OK
* this is package ‘mlspatial’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Adeboye Azeez <azizadeboye@gmail.com>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mlspatial’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... WARNING
Found the following file with non-ASCII characters:
  R/model_evaluation.R
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
  ‘methods’ ‘xgb’
Package in Depends field not imported from: ‘tidyverse’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
compute_spatial_autocorr: no visible global function definition for
  ‘%>%’
eval_model: no visible global function definition for ‘model.matrix’
eval_model: no visible global function definition for ‘predict’
join_data: no visible global function definition for ‘%>%’
plot_obs_vs_pred: no visible global function definition for ‘aes’
plot_obs_vs_pred: no visible binding for global variable ‘obs’
plot_obs_vs_pred: no visible binding for global variable ‘pred’
plot_obs_vs_pred: no visible global function definition for
  ‘geom_point’
plot_obs_vs_pred: no visible global function definition for
  ‘geom_abline’
plot_obs_vs_pred: no visible global function definition for ‘labs’
plot_obs_vs_pred: no visible global function definition for
  ‘theme_minimal’
plot_single_map: no visible global function definition for ‘tm_shape’
plot_single_map: no visible global function definition for ‘tm_fill’
plot_single_map: no visible global function definition for
  ‘tm_scale_intervals’
plot_single_map: no visible global function definition for ‘tm_legend’
plot_single_map: no visible global function definition for ‘tm_borders’
plot_single_map: no visible global function definition for ‘tm_compass’
plot_single_map: no visible global function definition for ‘tm_layout’
train_xgb: no visible global function definition for ‘model.matrix’
train_xgb: no visible global function definition for ‘xgb.DMatrix’
Undefined global functions or variables:
  %>% aes geom_abline geom_point labs model.matrix obs pred predict
  theme_minimal tm_borders tm_compass tm_fill tm_layout tm_legend
  tm_scale_intervals tm_shape xgb.DMatrix
Consider adding
  importFrom("stats", "model.matrix", "predict")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data codoc mismatches from Rd file 'panc_incidence.Rd':
Variables in data frame 'panc_incidence'
  Code: NAME agea ageb agec fagea fageb fagec female incidence magea
        mageb magec male yra yrb yrc yrd yre
  Docs: NAME agea ageb agec fagea fageb fagec female incidence magea
        mageb mageb male yra yrb yrc yrd yre

Data codoc mismatches from Rd file 'panc_prevalence.Rd':
Variables in data frame 'panc_prevalence'
  Code: NAME agea ageb agec fagea fageb fagec female magea mageb magec
        male prevalence yra yrb yrc yrd yre
  Docs: NAME agea ageb agec fagea fageb fagec female magea mageb mageb
        male prevalence yra yrb yrc yrd yre

Data codoc mismatches from Rd file 'pancre_mort.Rd':
Variables in data frame 'pancre_mort'
  Code: NAME agea ageb agec fagea fageb fagec female magea mageb magec
        male mortality yra yrb yrc yrd yre
  Docs: NAME agea ageb agec fagea fageb fagec female magea mageb mageb
        male mortality yra yrb yrc yrd yre

* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'compute_spatial_autocorr.Rd'
  ‘sf_data’ ‘values’ ‘signif’

Undocumented arguments in Rd file 'eval_model.Rd'
  ‘model’ ‘data’ ‘formula’ ‘model_type’

Undocumented arguments in Rd file 'plot_obs_vs_pred.Rd'
  ‘observed’ ‘predicted’ ‘title’

Undocumented arguments in Rd file 'train_rf.Rd'
  ‘data’ ‘formula’ ‘ntree’ ‘seed’

Undocumented arguments in Rd file 'train_svr.Rd'
  ‘data’ ‘formula’

Undocumented arguments in Rd file 'train_xgb.Rd'
  ‘data’ ‘formula’ ‘nrounds’ ‘max_depth’ ‘eta’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34s/34s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 WARNINGs, 2 NOTEs