species_params <- NS_species_params w <- NS_params@w # knife-edge ---- test_that("knife-edge selectivity function is working properly", { expect_length(knife_edge(w, 20, species_params = species_params[1, ]), length(w)) NS_species_params_gears$sel_func <- "knife_edge" NS_species_params_gears$knife_edge_size <- 1000 NS_species_params_gears$knife_edge_size[NS_species_params_gears$gear == "Industrial"] <- 500 # Chop off l25, l50, a and b columns - the trawl selectivity NS_species_params_gears <- NS_species_params_gears[,!(colnames(NS_species_params_gears) %in% c("l25","l50","a","b"))] params <- newMultispeciesParams(NS_species_params_gears, inter, info_level = 0) industrial_species <- as.character(NS_species_params_gears$species[NS_species_params_gears$gear == "Industrial"]) pelagic_species <- as.character(NS_species_params_gears$species[NS_species_params_gears$gear == "Pelagic"]) beam_trawl_species <- as.character(NS_species_params_gears$species[NS_species_params_gears$gear == "Beam"]) otter_trawl_species <- as.character(NS_species_params_gears$species[NS_species_params_gears$gear == "Otter"]) expect_true(all(params@selectivity["Industrial",industrial_species,params@w < 500] == 0)) expect_true(all(params@selectivity["Industrial",industrial_species,params@w >= 500] == 1)) expect_true(all(params@selectivity["Pelagic",pelagic_species,params@w >= 1000] == 1)) expect_true(all(params@selectivity["Pelagic",pelagic_species,params@w < 1000] == 0)) expect_true(all(params@selectivity["Beam",beam_trawl_species,params@w >= 1000] == 1)) expect_true(all(params@selectivity["Beam",beam_trawl_species,params@w < 1000] == 0)) expect_true(all(params@selectivity["Otter",otter_trawl_species,params@w >= 1000] == 1)) expect_true(all(params@selectivity["Otter",otter_trawl_species,params@w < 1000] == 0)) sim <- project(params, t_max = 10, effort = 1) fm <- getFMortGear(sim) expect_true(all(fm[10,"Industrial",industrial_species,sim@params@w < 500] == 0)) expect_true(all(fm[10,"Industrial",industrial_species,sim@params@w >= 500] > 0)) expect_true(all(fm[10,"Pelagic",pelagic_species,sim@params@w >= 1000] > 0)) expect_true(all(fm[10,"Pelagic",pelagic_species,sim@params@w < 1000] == 0)) expect_true(all(fm[10,"Beam",beam_trawl_species,sim@params@w >= 1000] > 0)) expect_true(all(fm[10,"Beam",beam_trawl_species,sim@params@w < 1000] == 0)) expect_true(all(fm[10,"Otter",otter_trawl_species,sim@params@w >= 1000] > 0)) expect_true(all(fm[10,"Otter",otter_trawl_species,sim@params@w < 1000] == 0)) }) # sigmoid_length ---- test_that("sigmoid_length works", { expect_error(sigmoid_length(w, 20, 30, species_params = species_params), "The selectivity function needs the weight-length parameters ") species_params$a <- 0.5 species_params$b <- 3 expect_length(sigmoid_length(w, 20, 30, species_params = species_params[1, ]), length(w)) }) # double_sigmoid_length ---- test_that("double_sigmoid_length works", { expect_error(double_sigmoid_length(w, 20, 30, 40, 50, species_params = species_params), "The selectivity function needs the weight-length parameters ") species_params$a <- 0.5 species_params$b <- 3 expect_length(double_sigmoid_length(w, 20, 30, 40, 50, species_params = species_params[1, ]), length(w)) expect_error(double_sigmoid_length(w, 20, 30, 40, 30, species_params = species_params[1, ]), "l50_right not less than l25_right") }) # sigmoid_weight ---- test_that("sigmoid_weight works", { expect_length(sigmoid_weight(w, sigmoidal_weight = 20, sigmoidal_sigma = 2), length(w)) })