# newMultispeciesParams ---- # * Dimensions are correct ---- test_that("constructor with species_params and interaction signature gives the right dimensions", { params <- newMultispeciesParams(NS_species_params, inter, info_level = 0) # expect_that(params, is_a("MizerParams")) # deprecated, trying to find alternative expect_equal(class(params)[1], "MizerParams") # alternative? expect_equal(dim(params@psi)[1], nrow(NS_species_params)) expect_equal(dimnames(params@psi)$sp, as.character(NS_species_params$species)) params_gears <- newMultispeciesParams(NS_species_params_gears, inter, info_level = 0) expect_equal(unique(dimnames(params_gears@selectivity)$gear), as.character(unique(params_gears@species_params$gear))) # pass in other arguments params_gears <- newMultispeciesParams(NS_species_params_gears, inter, no_w = 50, info_level = 0) expect_length(params_gears@w, 50) expect_equal(dimnames(params_gears@selectivity)$gear, unique(NS_species_params_gears$gear)) }) test_that("constructor with only species_params signature gives the right dimensions", { params <- newMultispeciesParams(NS_species_params, info_level = 0) expect_true(all(params@interaction == 1)) expect_equal(dim(params@interaction), c(dim(params@psi)[1], dim(params@psi)[1])) }) # * w_min_idx is correct ---- test_that("w_min_idx is being set correctly", { # default - no w_min in params data so set to first size params <- newMultispeciesParams(NS_species_params_gears, inter, info_level = 0) expect_true(all(params@species_params$w_min == params@w[1])) expect_true(all(params@w_min_idx == 1)) # Set w_min to be the min by hand NS_species_params_gears$w_min <- 0.001 params <- newMultispeciesParams(NS_species_params_gears, inter, info_level = 0) expect_true(all(params@w_min_idx == 1)) # Change w_min of one of the species NS_species_params_gears$w_min <- 0.001 NS_species_params_gears$w_min[7] <- 10 params <- newMultispeciesParams(NS_species_params_gears, inter, info_level = 0) expect_true(all(params@w_min_idx[c(1:6, 8:12)] == 1)) expect_equal(as.integer(params@w_min_idx[7]), max(which(params@w <= 10))) }) test_that("Errors are reported", { expect_error(newMultispeciesParams(NS_species_params, min_w_pp = 1, info_level = 0), "min_w_pp must be larger than min_w") }) # setParams ---- test_that("setParams can leave params unchanged", { expect_unchanged(setParams(NS_params), NS_params) }) test_that("setParams handles change in w_max", { params <- NS_params # Check that ft_mask is recalculated correctly params@species_params$w_max[1] <- 1000 params <- setParams(params) expect_equal(sum(params@ft_mask[1, ]), 205) # Check that error is thrown if w_max is too large params@species_params$w_max[1] <- max(params@w) + 10 expect_error(setParams(params), "The maximum weight of a species is larger than") })