downloading reverse dependencies ‘Compositional’, ‘CompositionalClust’, ‘ContaminatedMixt’, ‘MixGHD’, ‘oclust’, ‘outlierMBC’ trying URL 'file:///data/Repositories/CRAN/src/contrib/Compositional_8.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CompositionalClust_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ContaminatedMixt_1.3.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MixGHD_2.3.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/oclust_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/outlierMBC_0.0.1.tar.gz' installing dependencies ‘codalm’, ‘Compositional’, ‘e1071’, ‘flexCWM’, ‘FlexDir’, ‘ghyp’, ‘lowmemtkmeans’, ‘mixture’, ‘RcppArmadillo’ also installing the dependency ‘ContaminatedMixt’ begin installing package ‘codalm’ begin installing package ‘FlexDir’ begin installing package ‘ghyp’ begin installing package ‘RcppArmadillo’ begin installing package ‘e1071’ * installing *source* package ‘codalm’ ... ** this is package ‘codalm’ version ‘0.1.3’ ** package ‘codalm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codalm) * installing *source* package ‘FlexDir’ ... ** this is package ‘FlexDir’ version ‘1.0’ ** package ‘FlexDir’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FlexDir) * installing *source* package ‘ghyp’ ... ** this is package ‘ghyp’ version ‘1.6.5’ ** package ‘ghyp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9eOsad/R.INSTALL20f61f3ce1e7c/ghyp/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rgig.c -o rgig.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ghyp.so init.o rgig.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9eOsad/R.INSTALL20f61f3ce1e7c/ghyp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ghyp/00new/ghyp/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ghyp) * installing *source* package ‘e1071’ ... ** this is package ‘e1071’ version ‘1.7-17’ ** package ‘e1071’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFsHVbH/R.INSTALL20f61b2e9f05d3/e1071/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rsvm.c -o Rsvm.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmeans.c -o cmeans.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cshell.c -o cshell.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c floyd.c -o floyd.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c svm.cpp -o svm.o svm.cpp: In function ‘decision_function svm_train_one(const svm_problem*, const svm_parameter*, double, double)’: svm.cpp:1706:20: warning: ‘si.Solver::SolutionInfo::rho’ may be used uninitialized [-Wmaybe-uninitialized] 1706 | f.rho = si.rho; | ~~~^~~ svm.cpp:1658:30: note: ‘si’ declared here 1658 | Solver::SolutionInfo si; | ^~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o init.o svm.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFsHVbH/R.INSTALL20f61b2e9f05d3/e1071/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-e1071/00new/e1071/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (e1071) * installing *source* package ‘RcppArmadillo’ ... ** this is package ‘RcppArmadillo’ version ‘15.2.3-1’ ** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-15 -std=gnu++17 accepts -g... (cached) yes checking for g++-15 -std=gnu++17 option to enable C++11 features... (cached) none needed checking what system we are on... running Linux on x86_64 checking whether we have a suitable tempdir... /home/hornik/tmp/scratch checking whether on Linux... yes checking whether R CMD SHLIB can already compile OpenMP programs... yes checking whether on macOS... no checking for OpenMP... found and suitable configure: creating ./config.status config.status: creating inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdIWgTZ/R.INSTALL20f61d2dfa28e4/RcppArmadillo/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppArmadillo.cpp -o RcppArmadillo.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fastLm.cpp -o fastLm.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdIWgTZ/R.INSTALL20f61d2dfa28e4/RcppArmadillo/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppArmadillo) begin installing package ‘lowmemtkmeans’ begin installing package ‘mixture’ * installing *source* package ‘lowmemtkmeans’ ... ** this is package ‘lowmemtkmeans’ version ‘0.1.4’ ** package ‘lowmemtkmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpi7bGAO/R.INSTALL20fa2c56067e13/lowmemtkmeans/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tkmeans.cpp -o tkmeans.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lowmemtkmeans.so RcppExports.o tkmeans.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpi7bGAO/R.INSTALL20fa2c56067e13/lowmemtkmeans/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lowmemtkmeans/00new/lowmemtkmeans/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lowmemtkmeans) * installing *source* package ‘mixture’ ... ** this is package ‘mixture’ version ‘2.2.0’ ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking for g++-15 -std=gnu++17 option to support OpenMP... -fopenmp checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3lOghJ/R.INSTALL20fa2a666b83f5/mixture/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c density.cpp -o density.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pcm.cpp -o pcm.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mixture.so RcppExports.o density.o pcm.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3lOghJ/R.INSTALL20fa2a666b83f5/mixture/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixture/00new/mixture/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixture) begin installing package ‘ContaminatedMixt’ begin installing package ‘Compositional’ * installing *source* package ‘ContaminatedMixt’ ... ** this is package ‘ContaminatedMixt’ version ‘1.3.8’ ** package ‘ContaminatedMixt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQcbOwT/R.INSTALL20fe07b7a4d98/ContaminatedMixt/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ContaminatedMixt_init.c -o ContaminatedMixt_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Uncontam.c -o Uncontam.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c brentmin.c -o brentmin.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c contmixture.c -o contmixture.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mixture.c -o mixture.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ContaminatedMixt.so ContaminatedMixt_init.o Uncontam.o brentmin.o contmixture.o mixture.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQcbOwT/R.INSTALL20fe07b7a4d98/ContaminatedMixt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ContaminatedMixt/00new/ContaminatedMixt/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ContaminatedMixt) begin installing package ‘flexCWM’ * installing *source* package ‘Compositional’ ... ** this is package ‘Compositional’ version ‘8.0’ ** package ‘Compositional’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Compositional) * installing *source* package ‘flexCWM’ ... ** this is package ‘flexCWM’ version ‘1.92’ ** package ‘flexCWM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flexCWM) checking mixture_2.2.0.tar.gz ... checking Compositional_8.0.tar.gz ... checking CompositionalClust_1.2.tar.gz ... checking ContaminatedMixt_1.3.8.tar.gz ... checking MixGHD_2.3.7.tar.gz ... checking oclust_1.0.0.tar.gz ... checking outlierMBC_0.0.1.tar.gz ... Depends: Package: mixture Depends: R (>= 3.5.0), lattice (>= 0.20) Imports: Rcpp (>= 1.0.2), methods LinkingTo: Rcpp, RcppArmadillo, BH, RcppGSL Timings: user system elapsed mixture 76.356 5.527 84.88 Results: Check status summary: OK Source packages 1 Reverse depends 6 Check results summary: mixture ... OK rdepends_Compositional ... OK rdepends_CompositionalClust ... OK rdepends_ContaminatedMixt ... OK rdepends_MixGHD ... OK rdepends_oclust ... OK rdepends_outlierMBC ... OK Check results changes: Package: ContaminatedMixt Check: CRAN incoming feasibility Old result: NOTE Package: MixGHD Check: CRAN incoming feasibility Old result: NOTE