downloading reverse dependencies ... downloading MCARtest_1.2.1.tar.gz ... ok downloading tidycomm_0.4.1.tar.gz ... ok downloading psycCleaning_0.1.1.tar.gz ... ok installing dependencies ‘highs’, ‘lm.beta’, ‘missMethods’, ‘misty’, ‘mvnmle’ begin installing package ‘mvnmle’ begin installing package ‘misty’ begin installing package ‘highs’ begin installing package ‘missMethods’ begin installing package ‘lm.beta’ * installing *source* package ‘lm.beta’ ... ** package ‘lm.beta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lm.beta) * installing *source* package ‘mvnmle’ ... ** package ‘mvnmle’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsXy3xr/R.INSTALL1bd6ca105e8d7e/mvnmle/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c evallf.c -o evallf.o evallf.c: In function ‘evallf’: evallf.c:21:34: warning: missing braces around initializer [-Wmissing-braces] 21 | double del[MAX_VARS][MAX_VARS]={0.0}, subdel[MAX_VARS][MAX_VARS]={0.0},c,d; | ^ | { } evallf.c:21:68: warning: missing braces around initializer [-Wmissing-braces] 21 | double del[MAX_VARS][MAX_VARS]={0.0}, subdel[MAX_VARS][MAX_VARS]={0.0},c,d; | ^ | { } gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mvnmle.so evallf.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsXy3xr/R.INSTALL1bd6ca105e8d7e/mvnmle/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvnmle/00new/mvnmle/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvnmle) * installing *source* package ‘missMethods’ ... ** package ‘missMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missMethods) * installing *source* package ‘misty’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (misty) * installing *source* package ‘highs’ ... ** package ‘highs’ successfully unpacked and MD5 sums checked ** using staged installation Use 'configure' CMAKE VERSION: 'cmake version 3.30.4' arch: 'x86_64' R_ARCH: '' CC: 'gcc-14' CXX: 'g++-14 -std=gnu++17' CXX11: 'g++-14' -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-14 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-14 - skipped -- Detecting C compile features -- Detecting C compile features - done -- IPO / LTO enabled -- Performing Test HIGHS_HAVE_MM_PAUSE -- Performing Test HIGHS_HAVE_MM_PAUSE - Success -- Performing Test HIGHS_HAVE_BUILTIN_CLZ -- Performing Test HIGHS_HAVE_BUILTIN_CLZ - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Looking for a Fortran compiler -- Looking for a Fortran compiler - /usr/bin/gfortran-14 -- The Fortran compiler identification is GNU 14.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran-14 - skipped -- Looking for a CSharp compiler -- Looking for a CSharp compiler - NOTFOUND -- Performing Test NO_OMIT_FRAME_POINTER_FLAG_SUPPORTED -- Performing Test NO_OMIT_FRAME_POINTER_FLAG_SUPPORTED - Success -- Compilation date: 2024-10-24 -- Build shared libraries: OFF -- Build type: RELEASE -- No CSharp support -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (4.2s) -- Generating done (0.1s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' [ 0%] Building CXX object src/CMakeFiles/libhighs.dir/__/extern/filereaderlp/reader.cpp.o [ 1%] Building CXX object src/CMakeFiles/libhighs.dir/io/Filereader.cpp.o [ 2%] Building CXX object src/CMakeFiles/libhighs.dir/io/FilereaderLp.cpp.o [ 2%] Building CXX object src/CMakeFiles/libhighs.dir/io/FilereaderEms.cpp.o [ 3%] Building CXX 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/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c: In function ‘lu_file_reappend’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c:80:24: warning: variable ‘room’ set but not used [-Wunused-but-set-variable] 80 | lu_int fmem, used, room, ibeg, iend, pos; | ^~~~ [ 70%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_internal.c.o [ 70%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_matrix_norm.c.o [ 71%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_singletons.c.o [ 72%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_symbolic.c.o [ 72%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_update.c.o [ 73%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_initialize.c.o [ 73%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_solve_sparse.c.o [ 74%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_pivot.c.o /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_any’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:186:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 186 | lu_int grow, room, found, position; | ^~~~~ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_small’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:478:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 478 | lu_int grow, room, found, position, col_number; | ^~~~~ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_singleton_col’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:871:42: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 871 | lu_int j, pos, rpos, put, nz, where, found; | ^~~~~ [ 75%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_dense.c.o [ 75%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_triangular.c.o [ 76%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_object.c.o [ 76%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_update.c.o [ 77%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_dfs.c.o [ 78%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_garbage_perm.c.o [ 78%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_residual_test.c.o [ 79%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_for_update.c.o [ 79%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/basiclu_kernel.cc.o 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src/CMakeFiles/libhighs.dir/ipm/ipx/iterate.cc.o [ 88%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver.cc.o [ 89%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver_basis.cc.o [ 89%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver_diag.cc.o [ 90%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/linear_operator.cc.o [ 91%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/lp_solver.cc.o [ 91%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/lu_factorization.cc.o [ 92%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/lu_update.cc.o [ 92%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/maxvolume.cc.o [ 93%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/model.cc.o [ 94%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/normal_matrix.cc.o [ 94%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/sparse_matrix.cc.o [ 95%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/sparse_utils.cc.o [ 95%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/splitted_normal_matrix.cc.o [ 96%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/starting_basis.cc.o [ 97%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/symbolic_invert.cc.o [ 97%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/timer.cc.o [ 98%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/utils.cc.o [ 99%] Linking CXX static library ../lib/libhighs.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' [ 99%] Built target libhighs make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' [ 99%] Building CXX object app/CMakeFiles/highs.dir/RunHighs.cpp.o [100%] Linking CXX executable ../bin/highs /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessBounds’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:359:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 359 | if (from_k > to_k) return HighsStatus::kOk; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:357:12: note: ‘to_k’ was declared here 357 | HighsInt to_k; | ^ In function ‘changeBounds’, inlined from ‘changeLpColBounds’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1608:15, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:662:20: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1628:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1628 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1626:12: note: ‘to_k’ was declared here 1626 | HighsInt to_k; | ^ In member function ‘setNonbasicStatusInterface’, inlined from ‘setNonbasicStatusInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:833:6, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:666:29: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:863:31: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 863 | for (HighsInt k = from_k; k <= to_k; k++) { | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:843:12: note: ‘to_k’ was declared here 843 | HighsInt to_k; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessCosts.constprop’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:288:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 288 | if (from_k > to_k) return return_status; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:286:12: note: ‘to_k’ was declared here 286 | HighsInt to_k; | ^ In function ‘changeLpCosts’, inlined from ‘changeCostsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:621:16, inlined from ‘changeColsCost’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2081:49, inlined from ‘feasibilityPump’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp:1080:41: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1577:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1577 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘feasibilityPump’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1575:12: note: ‘to_k’ was declared here 1575 | HighsInt to_k; | ^ In function ‘deleteScale’, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:365:16, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1460:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1460 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1458:12: note: ‘to_k’ was declared here 1458 | HighsInt to_k; | ^ In function ‘deleteRowsFromLpVectors’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1407:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1420:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1420 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1416:12: note: ‘to_k’ was declared here 1416 | HighsInt to_k; | ^ In member function ‘deleteRows’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1408:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:605:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 605 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:603:12: note: ‘to_k’ was declared here 603 | HighsInt to_k; | ^ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' [100%] Built target highs make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/inst/HiGHS/build' Install the project... -- Install configuration: "RELEASE" -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/bin/highs -- Set non-toolchain portion of runtime path of "/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/bin/highs" to "/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/lib" -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/filereaderlp/builder.hpp -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/filereaderlp/model.hpp -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/filereaderlp/reader.hpp -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/Filereader.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/FilereaderLp.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/FilereaderEms.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/FilereaderMps.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/HMpsFF.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/HMPSIO.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/HighsIO.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/io/LoadOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HConst.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HStruct.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsAnalysis.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsInfo.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsInfoDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsLp.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsLpSolverObject.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsLpUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsModelUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsRanging.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsRuntimeOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsSolution.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsSolutionDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/lp_data/HighsStatus.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsCliqueTable.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsCutGeneration.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsConflictPool.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsCutPool.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsDebugSol.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsDomainChange.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsDomain.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsDynamicRowMatrix.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsGFkSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsImplications.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsLpAggregator.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsLpRelaxation.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsMipSolverData.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsMipSolver.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsModkSeparator.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsNodeQueue.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsObjectiveFunction.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsPathSeparator.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsPrimalHeuristics.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsPseudocost.h -- Installing: /home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs/mip/HighsRedcostFixing.h -- Installing: 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-I/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c highs_interface.cpp -o highs_interface.o highs_interface.cpp: In function ‘int32_t solver_get_sense(SEXP)’: highs_interface.cpp:259:17: warning: unused variable ‘status’ [-Wunused-variable] 259 | HighsStatus status = highs->getObjectiveSense(sense); | ^~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o highs.so RcppExports.o highs_interface.o -L/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/lib -L/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src/highslib/lib64 -lhighs -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9Cx6I/R.INSTALL1bd6cc641286b2/highs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-highs/00new/highs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highs) checking misty_0.6.8.tar.gz ... checking tidycomm_0.4.1.tar.gz ... checking MCARtest_1.2.1.tar.gz ... checking psycCleaning_0.1.1.tar.gz ... Depends: Package: misty Depends: R (>= 4.2.0) Imports: data.table, ggplot2, haven, lavaan, lme4, rstudioapi Timings: user system elapsed misty 175.8 4.841 181.218 Results: Check status summary: ERROR NOTE OK Source packages 0 0 1 Reverse depends 1 1 1 Check results summary: misty ... OK rdepends_MCARtest ... ERROR * checking examples ... [3s/3s] ERROR rdepends_psycCleaning ... OK rdepends_tidycomm ... NOTE * checking Rd cross-references ... NOTE Check results changes: Package: MCARtest Check: examples New result: ERROR