downloading reverse dependencies ... downloading ADAPTS_1.0.22.tar.gz ... ok downloading bartMachine_1.3.4.1.tar.gz ... ok downloading bartXViz_1.0.8.tar.gz ... ok downloading compIndexBuilder_1.0.0.tar.gz ... ok downloading fastml_0.6.2.tar.gz ... ok downloading funspace_0.2.2.tar.gz ... ok downloading FuzzyImputationTest_0.5.1.tar.gz ... ok downloading GenoPop_1.0.0.tar.gz ... ok downloading highMLR_0.1.1.tar.gz ... ok downloading imanr_2.0.0.tar.gz ... ok downloading imp4p_1.2.tar.gz ... ok downloading KarsTS_2.4.1.tar.gz ... ok downloading longit_0.1.0.tar.gz ... ok downloading MERO_0.1.2.tar.gz ... ok downloading metamorphr_0.2.0.tar.gz ... ok downloading missCompare_1.0.3.tar.gz ... ok downloading obliqueRSF_0.1.2.tar.gz ... ok downloading promor_0.2.1.tar.gz ... ok downloading simputation_0.2.9.tar.gz ... ok downloading speaq_2.7.0.tar.gz ... ok downloading streamDAG_1.6.tar.gz ... ok downloading CALIBERrfimpute_1.0-7.tar.gz ... ok downloading hdImpute_0.2.1.tar.gz ... ok downloading mrIML_2.1.0.tar.gz ... ok downloading mvs_2.1.0.tar.gz ... ok downloading tidyLPA_1.1.0.tar.gz ... ok installing dependencies ‘asbio’, ‘baguette’, ‘bonsai’, ‘bundle’, ‘ComICS’, ‘DeconRNASeq’, ‘discrim’, ‘finetune’, ‘flashlight’, ‘FuzzyResampling’, ‘FuzzySimRes’, ‘gggenes’, ‘hstats’, ‘KODAMA’, ‘limma’, ‘MassSpecWavelet’, ‘MetricsWeighted’, ‘miceRanger’, ‘missForest’, ‘missRanger’, ‘mix’, ‘MRFcov’, ‘MVN’, ‘naniar’, ‘paran’, ‘plsmod’, ‘probably’, ‘qsmooth’, ‘shapviz’, ‘stlplus’, ‘themis’, ‘tseriesChaos’ Warning: package ‘DeconRNASeq’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘palasso’, ‘ROSE’ begin installing package ‘palasso’ begin installing package ‘ComICS’ begin installing package ‘ROSE’ begin installing package ‘gggenes’ begin installing package ‘baguette’ begin installing package ‘bonsai’ begin installing package ‘discrim’ begin installing package ‘finetune’ begin installing package ‘plsmod’ begin installing package ‘probably’ begin installing package ‘naniar’ begin installing package ‘miceRanger’ begin installing package ‘paran’ begin installing package ‘FuzzyResampling’ begin installing package ‘bundle’ begin installing package ‘MVN’ begin installing package ‘tseriesChaos’ begin installing package ‘stlplus’ begin installing package ‘KODAMA’ begin installing package ‘limma’ begin installing package ‘MassSpecWavelet’ begin installing package ‘asbio’ begin installing package ‘missRanger’ begin installing package ‘MetricsWeighted’ begin installing package ‘hstats’ begin installing package ‘MRFcov’ begin installing package ‘mix’ begin installing package ‘missForest’ * installing *source* package ‘MetricsWeighted’ ... ** this is package ‘MetricsWeighted’ version ‘1.0.4’ ** package ‘MetricsWeighted’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetricsWeighted) begin installing package ‘flashlight’ * installing *source* package ‘missRanger’ ... ** this is package ‘missRanger’ version ‘2.6.1’ ** package ‘missRanger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missRanger) * installing *source* package ‘paran’ ... ** this is package ‘paran’ version ‘1.5.4’ ** package ‘paran’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paran) * installing *source* package ‘ROSE’ ... ** this is package ‘ROSE’ version ‘0.0-4’ ** package ‘ROSE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROSE) begin installing package ‘themis’ * installing *source* package ‘ComICS’ ... ** this is package ‘ComICS’ version ‘1.0.4’ ** package ‘ComICS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ComICS) * installing *source* package ‘FuzzyResampling’ ... ** this is package ‘FuzzyResampling’ version ‘0.6.4’ ** package ‘FuzzyResampling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FuzzyResampling) * installing *source* package ‘bundle’ ... ** this is package ‘bundle’ version ‘0.1.2’ ** package ‘bundle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bundle) * installing *source* package ‘MassSpecWavelet’ ... ** this is package ‘MassSpecWavelet’ version ‘1.75.1’ ** package ‘MassSpecWavelet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1JPTlc/R.INSTALL24c16785beea/MassSpecWavelet/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_local_maximum.c -o find_local_maximum.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MassSpecWavelet.so find_local_maximum.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1JPTlc/R.INSTALL24c16785beea/MassSpecWavelet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet) * installing *source* package ‘tseriesChaos’ ... ** this is package ‘tseriesChaos’ version ‘0.1-13.1’ ** package ‘tseriesChaos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCsiUhO/R.INSTALL24bb142d2fab/tseriesChaos/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C2.c -o C2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c d2.c -o d2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c false.nearest.c -o false.nearest.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_knearests.c -o find_knearests.o find_knearests.c: In function ‘find_knearests’: find_knearests.c:21:9: warning: variable ‘md’ set but not used [-Wunused-but-set-variable] 21 | int i,j,md; | ^~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c follow_points.c -o follow_points.o follow_points.c: In function ‘follow_points’: follow_points.c:22:30: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 22 | int m,d, s, nref, totref, k, length, *ref; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mutual.c -o mutual.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stplot.c -o stplot.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o tseriesChaos.so C2.o d2.o false.nearest.o find_knearests.o follow_points.o misc.o mutual.o search.o stplot.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCsiUhO/R.INSTALL24bb142d2fab/tseriesChaos/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tseriesChaos/00new/tseriesChaos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tseriesChaos) * installing *source* package ‘gggenes’ ... ** this is package ‘gggenes’ version ‘0.5.1’ ** package ‘gggenes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gggenes) begin installing package ‘shapviz’ * installing *source* package ‘mix’ ... ** this is package ‘mix’ version ‘1.0-13’ ** package ‘mix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpoq15JB/R.INSTALL24d77497d48/mix/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mix.f -o mix.o mix.f:1209:58: 1209 | / n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz,l3) | 1~~ Warning: Unused dummy argument ‘mcz’ at (1) [-Wunused-dummy-argument] mix.f:1209:62: 1209 | / n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz,l3) | 1~~~ Warning: Unused dummy argument ‘nmcz’ at (1) [-Wunused-dummy-argument] mix.f:1057:34: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1 Warning: Unused dummy argument ‘c’ at (1) [-Wunused-dummy-argument] mix.f:1057:36: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1 Warning: Unused dummy argument ‘d’ at (1) [-Wunused-dummy-argument] mix.f:1057:42: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1~~~ Warning: Unused dummy argument ‘dmis’ at (1) [-Wunused-dummy-argument] mix.f:1057:38: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1~~ Warning: Unused dummy argument ‘jmp’ at (1) [-Wunused-dummy-argument] mix.f:1057:25: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1~~ Warning: Unused dummy argument ‘mcw’ at (1) [-Wunused-dummy-argument] mix.f:1057:29: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1~~~ Warning: Unused dummy argument ‘nmcw’ at (1) [-Wunused-dummy-argument] mix.f:1057:14: 1057 | / t3,n,z,i,p,mcw,nmcw,c,d,jmp,dmis,mobs,ocz,nocz,mcz,nmcz) | 1~ Warning: Unused dummy argument ‘t3’ at (1) [-Wunused-dummy-argument] mix.f:1056:56: 1056 | subroutine addstat1(q,psi,npsi,ncells,sigma,mu,theta,t1,t2, | 1~~~~ Warning: Unused dummy argument ‘theta’ at (1) [-Wunused-dummy-argument] mix.f:458:56: 458 | subroutine pstepm(q,psi,npsi,ncells,t1,t2,t3,n,p,prior,chf, | 1 Warning: Unused dummy argument ‘p’ at (1) [-Wunused-dummy-argument] mix.f:999:72: 999 | theta(m)=theta(m)*g/sumf | ^ Warning: ‘g’ may be used uninitialized [-Wmaybe-uninitialized] mix.f:961:64: 961 | double precision sumt,sumf,table(ncells),theta(ncells),g | ^ note: ‘g’ was declared here gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mix.so init.o mix.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpoq15JB/R.INSTALL24d77497d48/mix/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mix/00new/mix/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mix) * installing *source* package ‘flashlight’ ... ** this is package ‘flashlight’ version ‘1.0.0’ ** package ‘flashlight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flashlight) * installing *source* package ‘hstats’ ... ** this is package ‘hstats’ version ‘1.2.2’ ** package ‘hstats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hstats) * installing *source* package ‘missForest’ ... ** this is package ‘missForest’ version ‘1.6.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missForest) * installing *source* package ‘palasso’ ... ** this is package ‘palasso’ version ‘1.0.0’ ** package ‘palasso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palasso) begin installing package ‘FuzzySimRes’ * installing *source* package ‘discrim’ ... ** this is package ‘discrim’ version ‘1.0.2’ ** package ‘discrim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (discrim) * installing *source* package ‘naniar’ ... ** this is package ‘naniar’ version ‘1.1.0’ ** package ‘naniar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (naniar) * installing *source* package ‘bonsai’ ... ** this is package ‘bonsai’ version ‘0.4.0’ ** package ‘bonsai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bonsai) * installing *source* package ‘MRFcov’ ... ** this is package ‘MRFcov’ version ‘1.0.39’ ** package ‘MRFcov’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MRFcov) * installing *source* package ‘FuzzySimRes’ ... ** this is package ‘FuzzySimRes’ version ‘0.4.7’ ** package ‘FuzzySimRes’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcVSnK8/R.INSTALL29bd6e60425d/FuzzySimRes/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kolmim.c -o kolmim.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ks.c -o ks.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o FuzzySimRes.so kolmim.o ks.o -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcVSnK8/R.INSTALL29bd6e60425d/FuzzySimRes/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FuzzySimRes/00new/FuzzySimRes/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FuzzySimRes) * installing *source* package ‘miceRanger’ ... ** this is package ‘miceRanger’ version ‘1.5.0’ ** package ‘miceRanger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miceRanger) * installing *source* package ‘plsmod’ ... ** this is package ‘plsmod’ version ‘1.0.0’ ** package ‘plsmod’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsmod) * installing *source* package ‘shapviz’ ... ** this is package ‘shapviz’ version ‘0.10.3’ ** package ‘shapviz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shapviz) * installing *source* package ‘baguette’ ... ** this is package ‘baguette’ version ‘1.1.0’ ** package ‘baguette’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baguette) * installing *source* package ‘themis’ ... ** this is package ‘themis’ version ‘1.0.3’ ** package ‘themis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (themis) * installing *source* package ‘MVN’ ... ** this is package ‘MVN’ version ‘6.2’ ** package ‘MVN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MVN) * installing *source* package ‘finetune’ ... ** this is package ‘finetune’ version ‘1.2.1’ ** package ‘finetune’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (finetune) * installing *source* package ‘stlplus’ ... ** this is package ‘stlplus’ version ‘0.5.1’ ** package ‘stlplus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfwsF9e/R.INSTALL24c54844cd6e/stlplus/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interp.cpp -o interp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loess.cpp -o loess.o loess.cpp: In function ‘Rcpp::List c_loess(Rcpp::NumericVector, Rcpp::NumericVector, int, int, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector)’: loess.cpp:15:7: warning: variable ‘span2’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:14: warning: variable ‘span3’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ma.cpp -o ma.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stlplus.so RcppExports.o interp.o loess.o ma.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfwsF9e/R.INSTALL24c54844cd6e/stlplus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stlplus/00new/stlplus/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stlplus) * installing *source* package ‘probably’ ... ** this is package ‘probably’ version ‘1.2.0’ ** package ‘probably’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (probably) * installing *source* package ‘limma’ ... ** this is package ‘limma’ version ‘3.65.7’ ** package ‘limma’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMM085d/R.INSTALL24bf5f343544/limma/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c normexp.c -o normexp.o normexp.c: In function ‘fit_saddle_nelder_mead’: normexp.c:166:78: warning: ISO C forbids passing argument 9 of ‘nmmin’ between function pointer and ‘void *’ [-Wpedantic] 166 | nmmin(3, par, parsOut, Fmin, normexp_m2loglik_saddle, fail, abstol, intol, &ex, alpha, beta, gamma, trace, fncount, maxit); | ^~~ In file included from normexp.c:13: /home/hornik/tmp/R/include/R_ext/Applic.h:72:58: note: expected ‘void *’ but argument is of type ‘void (*)(void)’ 72 | int *fail, double abstol, double intol, void *ex, | ~~~~~~^~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weighted_lowess.c -o weighted_lowess.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o limma.so init.o normexp.o weighted_lowess.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMM085d/R.INSTALL24bf5f343544/limma/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-limma/00new/limma/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (limma) begin installing package ‘qsmooth’ * installing *source* package ‘KODAMA’ ... ** this is package ‘KODAMA’ version ‘3.0’ ** package ‘KODAMA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplSFdZc/R.INSTALL24bc4d0f906f/KODAMA/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c irlba.c -o irlba.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rnanoflann/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prova.cpp -o prova.o prova.cpp: In function ‘arma::ivec PLSDACV_simpls(arma::mat, arma::ivec, arma::ivec, int)’: prova.cpp:465:22: warning: ‘eT arma::Mat::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations] 465 | min_val = v22.max(index); | ~~~~~~~^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo:201, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from prova.cpp:19: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:56: note: declared here 545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const; | ^~~ prova.cpp: In function ‘arma::ivec PLSDACV_fastpls(arma::mat, arma::ivec, arma::ivec, int)’: prova.cpp:528:22: warning: ‘eT arma::Mat::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations] 528 | min_val = v22.max(index); | ~~~~~~~^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo:692: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here 7850 | Mat::max(uword& index_of_max_val) const | ^~~~~~~ prova.cpp: In function ‘Rcpp::List corecpp(arma::mat, arma::mat, arma::ivec, int, int, int, arma::ivec, Rcpp::NumericVector, bool, int)’: prova.cpp:676:26: warning: ‘eT arma::Mat::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations] 676 | min_val = v22.max(index); | ~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here 7850 | Mat::max(uword& index_of_max_val) const | ^~~~~~~ prova.cpp:693:26: warning: ‘eT arma::Mat::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations] 693 | min_val = v22.max(index); | ~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here 7850 | Mat::max(uword& index_of_max_val) const | ^~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o KODAMA.so RcppExports.o irlba.o prova.o -L. -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplSFdZc/R.INSTALL24bc4d0f906f/KODAMA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-KODAMA/00new/KODAMA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KODAMA) * installing *source* package ‘asbio’ ... ** this is package ‘asbio’ version ‘1.11’ ** package ‘asbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (asbio) * installing *source* package ‘qsmooth’ ... ** this is package ‘qsmooth’ version ‘1.25.0’ ** package ‘qsmooth’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qsmooth) checking missForest_1.6.1.tar.gz ... checking ADAPTS_1.0.22.tar.gz ... checking bartMachine_1.3.4.1.tar.gz ... checking bartXViz_1.0.8.tar.gz ... checking compIndexBuilder_1.0.0.tar.gz ... checking fastml_0.6.2.tar.gz ... checking funspace_0.2.2.tar.gz ... checking FuzzyImputationTest_0.5.1.tar.gz ... checking GenoPop_1.0.0.tar.gz ... checking highMLR_0.1.1.tar.gz ... checking imanr_2.0.0.tar.gz ... checking imp4p_1.2.tar.gz ... checking KarsTS_2.4.1.tar.gz ... checking longit_0.1.0.tar.gz ... checking MERO_0.1.2.tar.gz ... checking metamorphr_0.2.0.tar.gz ... checking missCompare_1.0.3.tar.gz ... checking obliqueRSF_0.1.2.tar.gz ... checking promor_0.2.1.tar.gz ... checking simputation_0.2.9.tar.gz ... checking speaq_2.7.0.tar.gz ... checking streamDAG_1.6.tar.gz ... checking CALIBERrfimpute_1.0-7.tar.gz ... checking hdImpute_0.2.1.tar.gz ... checking mrIML_2.1.0.tar.gz ... checking mvs_2.1.0.tar.gz ... checking tidyLPA_1.1.0.tar.gz ... Depends: Package: missForest Imports: randomForest, ranger, foreach, iterators, itertools, doRNG, stats, Rdpack Timings: user system elapsed missForest 70.293 6.705 77.255 Results: Check status summary: ERROR NOTE OK Source packages 0 1 0 Reverse depends 2 4 20 Check results summary: missForest ... NOTE * checking CRAN incoming feasibility ... [9s/9s] NOTE rdepends_ADAPTS ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_bartMachine ... OK rdepends_bartXViz ... OK rdepends_CALIBERrfimpute ... OK rdepends_compIndexBuilder ... OK rdepends_fastml ... OK rdepends_funspace ... OK rdepends_FuzzyImputationTest ... ERROR * checking tests ... [5s/5s] ERROR rdepends_GenoPop ... OK rdepends_hdImpute ... OK rdepends_highMLR ... OK rdepends_imanr ... OK rdepends_imp4p ... OK rdepends_KarsTS ... OK rdepends_longit ... OK rdepends_MERO ... OK rdepends_metamorphr ... OK rdepends_missCompare ... OK rdepends_mrIML ... OK rdepends_mvs ... OK rdepends_obliqueRSF ... OK rdepends_promor ... ERROR * checking Rd files ... [0s/0s] NOTE * checking tests ... [8s/8s] ERROR rdepends_simputation ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_speaq ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_streamDAG ... OK rdepends_tidyLPA ... NOTE * checking package subdirectories ... NOTE * checking Rd files ... [0s/0s] NOTE Check results changes: Package: ADAPTS Check: CRAN incoming feasibility Old result: NOTE Package: bartMachine Check: CRAN incoming feasibility Old result: NOTE Package: CALIBERrfimpute Check: CRAN incoming feasibility Old result: NOTE Package: FuzzyImputationTest Check: tests New result: ERROR Package: highMLR Check: CRAN incoming feasibility Old result: NOTE Package: imp4p Check: CRAN incoming feasibility Old result: NOTE Package: promor Check: tests New result: ERROR Package: speaq Check: CRAN incoming feasibility Old result: NOTE Package: tidyLPA Check: CRAN incoming feasibility Old result: NOTE