downloading reverse dependencies ‘baggingbwsel’, ‘brainKCCA’, ‘brainR’, ‘cowbell’, ‘curvHDR’, ‘espadon’, ‘hyperoverlap’, ‘kernstadapt’, ‘metadynminer3d’, ‘mritc’, ‘multiDimBio’, ‘NPCirc’, ‘plot3D’, ‘ptinpoly’, ‘refreg’, ‘sparr’, ‘feature’, ‘fsbrain’, ‘grt’, ‘ks’, ‘rgl’, ‘rgl2gltf’, ‘rwavelet’, ‘sm’, ‘uniformly’ trying URL 'file:///data/Repositories/CRAN/src/contrib/baggingbwsel_1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/brainKCCA_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/brainR_1.7.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cowbell_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/curvHDR_1.2-2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/espadon_1.11.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/hyperoverlap_1.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/kernstadapt_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/metadynminer3d_0.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mritc_0.5-3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/multiDimBio_1.2.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/NPCirc_3.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plot3D_1.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ptinpoly_2.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/refreg_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sparr_2.3-16.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/feature_1.2.15.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fsbrain_0.5.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/grt_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ks_1.15.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rgl_1.3.31.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rgl2gltf_1.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rwavelet_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sm_2.2-6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/uniformly_0.5.0.tar.gz' installing dependencies ‘alphashape3d’, ‘Bolstad2’, ‘brainR’, ‘CCA’, ‘data.table’, ‘feature’, ‘freesurferformats’, ‘js’, ‘kedd’, ‘manipulateWidget’, ‘mbend’, ‘metadynminer’, ‘misc3d’, ‘orientlib’, ‘oz’, ‘pgnorm’, ‘pkgfilecache’, ‘ptinpoly’, ‘sparr’, ‘sphereplot’, ‘squash’, ‘xdvir’ also installing the dependency ‘hexView’ begin installing package ‘hexView’ begin installing package ‘kedd’ begin installing package ‘CCA’ begin installing package ‘misc3d’ begin installing package ‘js’ begin installing package ‘metadynminer’ begin installing package ‘Bolstad2’ begin installing package ‘mbend’ begin installing package ‘pkgfilecache’ begin installing package ‘squash’ begin installing package ‘sphereplot’ begin installing package ‘oz’ begin installing package ‘orientlib’ begin installing package ‘alphashape3d’ begin installing package ‘manipulateWidget’ begin installing package ‘pgnorm’ begin installing package ‘data.table’ * installing *source* package ‘pkgfilecache’ ... ** this is package ‘pkgfilecache’ version ‘0.1.5’ ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgfilecache) begin installing package ‘freesurferformats’ * installing *source* package ‘oz’ ... ** this is package ‘oz’ version ‘1.0-22’ ** package ‘oz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oz) * installing *source* package ‘mbend’ ... ** this is package ‘mbend’ version ‘1.3.1’ ** package ‘mbend’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mbend) * installing *source* package ‘hexView’ ... ** this is package ‘hexView’ version ‘0.3-4’ ** package ‘hexView’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hexView) begin installing package ‘xdvir’ * installing *source* package ‘pgnorm’ ... ** this is package ‘pgnorm’ version ‘2.0.1’ ** package ‘pgnorm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pgnorm) * installing *source* package ‘squash’ ... ** this is package ‘squash’ version ‘1.0.9’ ** package ‘squash’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (squash) * installing *source* package ‘js’ ... ** this is package ‘js’ version ‘1.2.1’ ** package ‘js’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (js) * installing *source* package ‘sphereplot’ ... ** this is package ‘sphereplot’ version ‘1.5.1’ ** package ‘sphereplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sphereplot) * installing *source* package ‘Bolstad2’ ... ** this is package ‘Bolstad2’ version ‘1.0-29’ ** package ‘Bolstad2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bolstad2) * installing *source* package ‘orientlib’ ... ** this is package ‘orientlib’ version ‘0.10.5’ ** package ‘orientlib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘rotmatrix’ in package ‘orientlib’ Creating a generic function from function ‘rotvector’ in package ‘orientlib’ Creating a generic function from function ‘eulerzyx’ in package ‘orientlib’ Creating a generic function from function ‘quaternion’ in package ‘orientlib’ Creating a generic function from function ‘skewvector’ in package ‘orientlib’ Creating a generic function from function ‘skewmatrix’ in package ‘orientlib’ Creating a generic function from function ‘eulerzxz’ in package ‘orientlib’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orientlib) * installing *source* package ‘misc3d’ ... ** this is package ‘misc3d’ version ‘0.9-2’ ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (misc3d) begin installing package ‘feature’ begin installing package ‘ptinpoly’ begin installing package ‘brainR’ begin installing package ‘sparr’ * installing *source* package ‘alphashape3d’ ... ** this is package ‘alphashape3d’ version ‘1.3.3’ ** package ‘alphashape3d’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSx9dHY/R.INSTALL2a18392fb4b798/alphashape3d/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alphashape3d.c -o alphashape3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c insideashape.c -o insideashape.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surfaceNormals.c -o surfaceNormals.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alphashape3d.so alphashape3d.o init.o insideashape.o surfaceNormals.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSx9dHY/R.INSTALL2a18392fb4b798/alphashape3d/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-alphashape3d/00new/alphashape3d/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alphashape3d) * installing *source* package ‘manipulateWidget’ ... ** this is package ‘manipulateWidget’ version ‘0.11.2’ ** package ‘manipulateWidget’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (manipulateWidget) * installing *source* package ‘CCA’ ... ** this is package ‘CCA’ version ‘1.2.2’ ** package ‘CCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CCA) * installing *source* package ‘kedd’ ... ** this is package ‘kedd’ version ‘1.0.4’ ** package ‘kedd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kedd) * installing *source* package ‘freesurferformats’ ... ** this is package ‘freesurferformats’ version ‘1.0.0’ ** package ‘freesurferformats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freesurferformats) * installing *source* package ‘brainR’ ... ** this is package ‘brainR’ version ‘1.7.0’ ** package ‘brainR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brainR) * installing *source* package ‘xdvir’ ... ** this is package ‘xdvir’ version ‘0.2-0’ ** package ‘xdvir’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16 Using PKG_LIBS=-lfreetype ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1nYHX1/R.INSTALL2a1bc01773494c/xdvir/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c freetype.c -o freetype.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o xdvir.so freetype.o register.o -lfreetype -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1nYHX1/R.INSTALL2a1bc01773494c/xdvir/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-xdvir/00new/xdvir/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xdvir) * installing *source* package ‘ptinpoly’ ... ** this is package ‘ptinpoly’ version ‘2.8’ ** package ‘ptinpoly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY1mtim/R.INSTALL2a1ec83f03d6ae/ptinpoly/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PtInPoly_031009A.cc -o PtInPoly_031009A.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kodtree.cc -o kodtree.o kodtree.cc: In function ‘void sort1ShellFromaTri(int, double (*)[3], int, int (*)[3], int, int (*)[3])’: kodtree.cc:825:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 825 | if(tnb < 0) throw(7); /* JMM : 8/17/2014 : Fix Seg Fault as per B. Ripley and J. Liu */ | ^~ kodtree.cc:826:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 826 | if(trisort[tnb]==0){ | ^~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pinpolyhedronA.cc -o pinpolyhedronA.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ptinpoly.so PtInPoly_031009A.o kodtree.o pinpolyhedronA.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY1mtim/R.INSTALL2a1ec83f03d6ae/ptinpoly/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ptinpoly/00new/ptinpoly/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptinpoly) * installing *source* package ‘feature’ ... ** this is package ‘feature’ version ‘1.2.15’ ** package ‘feature’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (feature) * installing *source* package ‘metadynminer’ ... ** this is package ‘metadynminer’ version ‘0.1.7’ ** package ‘metadynminer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8R9cGj/R.INSTALL2a182430f2665/metadynminer/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mm.cpp -o mm.o mm.cpp: In function ‘Rcpp::NumericMatrix hills1p12(Rcpp::NumericVector, Rcpp::NumericVector, double, double, Rcpp::NumericVector, int, int, int)’: mm.cpp:176:10: warning: unused variable ‘x’ [-Wunused-variable] 176 | double x,y,z; | ^ mm.cpp:176:12: warning: unused variable ‘y’ [-Wunused-variable] 176 | double x,y,z; | ^ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o metadynminer.so RcppExports.o mm.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8R9cGj/R.INSTALL2a182430f2665/metadynminer/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-metadynminer/00new/metadynminer/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metadynminer) * installing *source* package ‘sparr’ ... ** this is package ‘sparr’ version ‘2.3-16’ ** package ‘sparr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparr) * installing *source* package ‘data.table’ ... ** this is package ‘data.table’ version ‘1.18.2.1’ ** package ‘data.table’ successfully unpacked and MD5 sums checked ** using staged installation gcc-15 15.2.0 zlib 1.3.1 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzrzxJP/R.INSTALL2a18377c7bad92/data.table/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assign.c -o assign.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c between.c -o between.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bmerge.c -o bmerge.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chmatch.c -o chmatch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cj.c -o cj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coalesce.c -o coalesce.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dogroups.c -o dogroups.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fastmean.c -o fastmean.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fcast.c -o fcast.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fifelse.c -o fifelse.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fmelt.c -o fmelt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forder.c -o forder.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c frank.c -o frank.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fread.c -o fread.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c freadR.c -o freadR.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c froll.c -o froll.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c frollR.c -o frollR.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c frolladaptive.c -o frolladaptive.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c frollapply.c -o frollapply.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fsort.c -o fsort.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fwrite.c -o fwrite.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fwriteR.c -o fwriteR.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsumm.c -o gsumm.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hash.c -o hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c idatetime.c -o idatetime.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ijoin.c -o ijoin.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inrange.c -o inrange.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mergelist.c -o mergelist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nafill.c -o nafill.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c negate.c -o negate.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nqrecreateindices.c -o nqrecreateindices.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c openmp-utils.c -o openmp-utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c programming.c -o programming.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quickselect.c -o quickselect.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbindlist.c -o rbindlist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reorder.c -o reorder.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shellsort.c -o shellsort.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shift.c -o shift.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snprintf.c -o snprintf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subset.c -o subset.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transpose.c -o transpose.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c types.c -o types.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c uniqlist.c -o uniqlist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vecseq.c -o vecseq.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrappers.c -o wrappers.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -fopenmp -lz -L/home/hornik/tmp/R/lib -lR PKG_CFLAGS = -fvisibility=hidden -fopenmp PKG_LIBS = -fvisibility=hidden -fopenmp -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzrzxJP/R.INSTALL2a18377c7bad92/data.table/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) checking misc3d_0.9-2.tar.gz ... checking baggingbwsel_1.1.tar.gz ... checking brainKCCA_0.1.0.tar.gz ... checking brainR_1.7.0.tar.gz ... checking cowbell_0.1.0.tar.gz ... checking curvHDR_1.2-2.tar.gz ... checking espadon_1.11.3.tar.gz ... checking hyperoverlap_1.1.4.tar.gz ... checking kernstadapt_0.4.0.tar.gz ... checking metadynminer3d_0.0.2.tar.gz ... checking mritc_0.5-3.tar.gz ... checking multiDimBio_1.2.5.tar.gz ... checking NPCirc_3.1.2.tar.gz ... checking plot3D_1.4.2.tar.gz ... checking ptinpoly_2.8.tar.gz ... checking refreg_0.1.1.tar.gz ... checking sparr_2.3-16.tar.gz ... checking feature_1.2.15.tar.gz ... checking fsbrain_0.5.6.tar.gz ... checking grt_0.2.1.tar.gz ... checking ks_1.15.1.tar.gz ... checking rgl_1.3.31.tar.gz ... checking rgl2gltf_1.0.7.tar.gz ... checking rwavelet_0.4.1.tar.gz ... checking sm_2.2-6.0.tar.gz ... checking uniformly_0.5.0.tar.gz ... Depends: Package: misc3d Imports: grDevices, graphics, stats, tcltk Timings: user system elapsed misc3d 43.3 7.033 51.214 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 3 22 Check results summary: misc3d ... OK rdepends_baggingbwsel ... OK rdepends_brainKCCA ... OK rdepends_brainR ... OK rdepends_cowbell ... OK rdepends_curvHDR ... OK rdepends_espadon ... OK rdepends_feature ... OK rdepends_fsbrain ... OK rdepends_grt ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_hyperoverlap ... OK rdepends_kernstadapt ... OK rdepends_ks ... OK rdepends_metadynminer3d ... OK rdepends_mritc ... OK rdepends_multiDimBio ... OK rdepends_NPCirc ... OK rdepends_plot3D ... OK rdepends_ptinpoly ... OK rdepends_refreg ... OK rdepends_rgl ... NOTE * checking relative paths in package URLs ... NOTE rdepends_rgl2gltf ... OK rdepends_rwavelet ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_sm ... OK rdepends_sparr ... OK rdepends_uniformly ... OK Check results changes: Package: grt Check: CRAN incoming feasibility Old result: NOTE Package: mritc Check: CRAN incoming feasibility Old result: NOTE Package: ptinpoly Check: CRAN incoming feasibility Old result: NOTE Package: rwavelet Check: CRAN incoming feasibility Old result: NOTE Package: sm Check: CRAN incoming feasibility Old result: NOTE Package: uniformly Check: CRAN incoming feasibility Old result: NOTE