downloading reverse dependencies ‘bakerrr’, ‘bregr’, ‘CBTF’, ‘chopin’, ‘crew’, ‘dRiftDM’, ‘flownet’, ‘future.mirai’, ‘GeomArchetypal’, ‘gratia’, ‘invivoPKfit’, ‘kinesis’, ‘mlr3’, ‘pliman’, ‘ragnar’, ‘reqres’, ‘rush’, ‘slideimp’, ‘synthReturn’, ‘worldmet’, ‘xplainfi’, ‘bbotk’, ‘brms’, ‘evsim’, ‘filibustr’, ‘important’, ‘kuzco’, ‘logger’, ‘mlr3cluster’, ‘mlr3fselect’, ‘mlr3hyperband’, ‘mlr3learners’, ‘mlr3mbo’, ‘mlr3misc’, ‘mlr3tuning’, ‘opusreader2’, ‘plumber2’, ‘promises’, ‘purrr’, ‘ravepipeline’, ‘routr’, ‘shiny’, ‘shinyOAuth’, ‘shinyscholar’, ‘teal’, ‘Tplyr’, ‘TrialSimulator’, ‘tune’ trying URL 'file:///data/Repositories/CRAN/src/contrib/bakerrr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bregr_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CBTF_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/chopin_0.9.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/crew_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dRiftDM_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flownet_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/future.mirai_0.10.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GeomArchetypal_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gratia_0.11.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/invivoPKfit_2.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/kinesis_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pliman_3.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ragnar_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/reqres_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rush_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/slideimp_0.5.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/synthReturn_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/worldmet_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/xplainfi_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bbotk_1.9.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/brms_2.23.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/evsim_1.7.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/filibustr_0.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/important_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/kuzco_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/logger_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3cluster_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3fselect_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3hyperband_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3learners_0.14.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3mbo_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3misc_0.21.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3tuning_1.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/opusreader2_0.6.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plumber2_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/promises_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/purrr_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ravepipeline_0.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/routr_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shiny_1.13.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyOAuth_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/shinyscholar_0.4.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/teal_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Tplyr_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TrialSimulator_1.10.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tune_2.0.1.tar.gz' installing dependencies ‘adagio’, ‘aion’, ‘anticlust’, ‘archetypal’, ‘arf’, ‘arkhe’, ‘autometric’, ‘botor’, ‘brotli’, ‘censored’, ‘cmdstanr’, ‘connectcreds’, ‘cowsay’, ‘desirability2’, ‘dggridR’, ‘dimensio’, ‘dipsaus’, ‘distances’, ‘distill’, ‘DMCfun’, ‘fastverse’, ‘fastVoteR’, ‘fiery’, ‘filearray’, ‘filtro’, ‘fireproof’, ‘firesafety’, ‘firesale’, ‘firestorm’, ‘forestploter’, ‘future.mirai’, ‘future.tests’, ‘gamair’, ‘gargoyle’, ‘ggalign’, ‘ggokabeito’, ‘ggstatsplot’, ‘GJRM’, ‘gMCPLite’, ‘graphicalMCP’, ‘gtExtras’, ‘h3r’, ‘httk’, ‘ieegio’, ‘irace’, ‘isopleuros’, ‘kairos’, ‘kit’, ‘knitcitations’, ‘knockoff’, ‘leaderCluster’, ‘LPCM’, ‘mapedit’, ‘mcptools’, ‘merDeriv’, ‘mirai’, ‘mlflow’, ‘mlr3data’, ‘mlr3fselect’, ‘MultiAssayExperiment’, ‘nexus’, ‘ollamar’, ‘otelsdk’, ‘pandoc’, ‘pharmaRTF’, ‘PK’, ‘priorsense’, ‘probably’, ‘projpred’, ‘protoclust’, ‘rapidoc’, ‘reactlog’, ‘redoc’, ‘redux’, ‘reqres’, ‘routr’, ‘roxy.shinylive’, ‘rpact’, ‘RPushbullet’, ‘rpymat’, ‘rsyslog’, ‘rtdists’, ‘rush’, ‘RWiener’, ‘shidashi’, ‘shinyvalidate’, ‘simdata’, ‘slackr’, ‘stabm’, ‘stream’, ‘syslognet’, ‘tabula’, ‘teal.code’, ‘teal.data’, ‘teal.logger’, ‘teal.reporter’, ‘teal.slice’, ‘teal.widgets’, ‘telegram’, ‘threeBrain’, ‘tomledit’, ‘UCSCXenaShiny’, ‘vembedr’, ‘visreg’, ‘watcher’, ‘waysign’ Warning: package ‘cmdstanr’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘forestmodel’, ‘pkgfilecache’, ‘ggside’, ‘statsExpressions’, ‘ezcox’, ‘UCSCXenaTools’, ‘h3lib’, ‘inflection’, ‘leafpm’, ‘Rdsdp’, ‘freesurferformats’, ‘readNSx’, ‘rpyANTs’, ‘IRkernel’, ‘rlistings’, ‘rtables.officer’, ‘BiocBaseUtils’, ‘lzstring’ begin installing package ‘forestmodel’ begin installing package ‘pkgfilecache’ begin installing package ‘ggside’ begin installing package ‘UCSCXenaTools’ begin installing package ‘statsExpressions’ begin installing package ‘h3lib’ begin installing package ‘inflection’ begin installing package ‘leafpm’ begin installing package ‘Rdsdp’ begin installing package ‘readNSx’ begin installing package ‘IRkernel’ begin installing package ‘rlistings’ begin installing package ‘BiocBaseUtils’ begin installing package ‘lzstring’ begin installing package ‘otelsdk’ begin installing package ‘forestploter’ begin installing package ‘ggalign’ begin installing package ‘merDeriv’ begin installing package ‘visreg’ begin installing package ‘anticlust’ begin installing package ‘autometric’ begin installing package ‘dggridR’ begin installing package ‘cowsay’ begin installing package ‘DMCfun’ begin installing package ‘kit’ begin installing package ‘leaderCluster’ begin installing package ‘future.tests’ begin installing package ‘distances’ * installing *source* package ‘leafpm’ ... ** this is package ‘leafpm’ version ‘0.1.0’ ** package ‘leafpm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leafpm) begin installing package ‘ggokabeito’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.12.0’ ** package ‘BiocBaseUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘GJRM’ * installing *source* package ‘pkgfilecache’ ... ** this is package ‘pkgfilecache’ version ‘0.1.5’ ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgfilecache) begin installing package ‘gamair’ * installing *source* package ‘leaderCluster’ ... ** this is package ‘leaderCluster’ version ‘1.5’ ** package ‘leaderCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8GqwUw/R.INSTALL37404b4d3ed987/leaderCluster/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c leaderCluster.c -o leaderCluster.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o leaderCluster.so init.o leaderCluster.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8GqwUw/R.INSTALL37404b4d3ed987/leaderCluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-leaderCluster/00new/leaderCluster/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaderCluster) begin installing package ‘httk’ * installing *source* package ‘cowsay’ ... ** this is package ‘cowsay’ version ‘1.2.2’ ** package ‘cowsay’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cowsay) begin installing package ‘PK’ * installing *source* package ‘inflection’ ... ** this is package ‘inflection’ version ‘1.3.7’ ** package ‘inflection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inflection) begin installing package ‘arkhe’ * installing *source* package ‘autometric’ ... ** this is package ‘autometric’ version ‘0.1.2’ ** package ‘autometric’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpqkdu32/R.INSTALL37403c41068ad2/autometric/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c autometric.c -o autometric.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c export.c -o export.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics.c -o metrics.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_linux.c -o metrics_linux.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_mac.c -o metrics_mac.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_windows.c -o metrics_windows.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c timers.c -o timers.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o autometric.so autometric.o export.o metrics.o metrics_linux.o metrics_mac.o metrics_windows.o thread.o timers.o -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpqkdu32/R.INSTALL37403c41068ad2/autometric/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-autometric/00new/autometric/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autometric) begin installing package ‘isopleuros’ * installing *source* package ‘gamair’ ... ** this is package ‘gamair’ version ‘1.0-2’ ** package ‘gamair’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamair) begin installing package ‘mlr3data’ * installing *source* package ‘ggokabeito’ ... ** this is package ‘ggokabeito’ version ‘0.1.0’ ** package ‘ggokabeito’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggokabeito) begin installing package ‘connectcreds’ * installing *source* package ‘visreg’ ... ** this is package ‘visreg’ version ‘2.8.0’ ** package ‘visreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visreg) begin installing package ‘mcptools’ * installing *source* package ‘forestploter’ ... ** this is package ‘forestploter’ version ‘1.1.3’ ** package ‘forestploter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestploter) begin installing package ‘pandoc’ * installing *source* package ‘IRkernel’ ... ** this is package ‘IRkernel’ version ‘1.3.2’ ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘brotli’ * installing *source* package ‘h3lib’ ... ** this is package ‘h3lib’ version ‘0.1.4’ ** package ‘h3lib’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ4HDkT/R.INSTALL373ffadd09aa2/h3lib/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c algos.c -o algos.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c baseCells.c -o baseCells.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bbox.c -o bbox.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coordijk.c -o coordijk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c directedEdge.c -o directedEdge.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c faceijk.c -o faceijk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3Assert.c -o h3Assert.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3Index.c -o h3Index.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iterators.c -o iterators.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c latLng.c -o latLng.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linkedGeo.c -o linkedGeo.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c localij.c -o localij.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mathExtensions.c -o mathExtensions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polyfill.c -o polyfill.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polygon.c -o polygon.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vec2d.c -o vec2d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vec3d.c -o vec3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vertex.c -o vertex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vertexGraph.c -o vertexGraph.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o h3lib.so algos.o baseCells.o bbox.o coordijk.o directedEdge.o faceijk.o h3Assert.o h3Index.o init.o iterators.o latLng.o linkedGeo.o localij.o mathExtensions.o polyfill.o polygon.o vec2d.o vec3d.o vertex.o vertexGraph.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ4HDkT/R.INSTALL373ffadd09aa2/h3lib/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-h3lib/00new/h3lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (h3lib) begin installing package ‘redux’ * installing *source* package ‘statsExpressions’ ... ** this is package ‘statsExpressions’ version ‘1.7.3’ ** package ‘statsExpressions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statsExpressions) begin installing package ‘arf’ * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.13’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) begin installing package ‘adagio’ * installing *source* package ‘UCSCXenaTools’ ... ** this is package ‘UCSCXenaTools’ version ‘1.7.0’ ** package ‘UCSCXenaTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSCXenaTools) begin installing package ‘irace’ * installing *source* package ‘future.tests’ ... ** this is package ‘future.tests’ version ‘0.9.0’ ** package ‘future.tests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.tests) begin installing package ‘projpred’ * installing *source* package ‘isopleuros’ ... ** this is package ‘isopleuros’ version ‘1.4.0’ ** package ‘isopleuros’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isopleuros) begin installing package ‘priorsense’ * installing *source* package ‘arkhe’ ... ** this is package ‘arkhe’ version ‘1.11.0’ ** package ‘arkhe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arkhe) begin installing package ‘RWiener’ * installing *source* package ‘connectcreds’ ... ** this is package ‘connectcreds’ version ‘0.1.0’ ** package ‘connectcreds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (connectcreds) begin installing package ‘rtdists’ * installing *source* package ‘forestmodel’ ... ** this is package ‘forestmodel’ version ‘0.6.2’ ** package ‘forestmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestmodel) begin installing package ‘desirability2’ * installing *source* package ‘pandoc’ ... ** this is package ‘pandoc’ version ‘0.2.0’ ** package ‘pandoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pandoc) begin installing package ‘censored’ * installing *source* package ‘mcptools’ ... ** this is package ‘mcptools’ version ‘0.2.0’ ** package ‘mcptools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcptools) begin installing package ‘gtExtras’ * installing *source* package ‘PK’ ... ** this is package ‘PK’ version ‘1.3-6’ ** package ‘PK’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PK) begin installing package ‘ollamar’ * installing *source* package ‘lzstring’ ... ** this is package ‘lzstring’ version ‘0.2.0’ ** package ‘lzstring’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBD88g0/R.INSTALL3740262e1624c/lzstring/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o In file included from code.cpp:4: lz-string.h: In function ‘lzstring::string lzstring::decompressFromEncodedURIComponent(const string&)’: lz-string.h:549:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 549 | for (int i = 0; i < keyStrUriSafe.length(); ++i) baseReverseDic[keyStrUriSafe.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ lz-string.h: In function ‘lzstring::string lzstring::decompressFromBase64(const string&)’: lz-string.h:574:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 574 | for (int i = 0; i < keyStrBase64.length(); ++i) baseReverseDic[keyStrBase64.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lzstring.so code.o cpp11.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBD88g0/R.INSTALL3740262e1624c/lzstring/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lzstring/00new/lzstring/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lzstring) begin installing package ‘botor’ * installing *source* package ‘adagio’ ... ** this is package ‘adagio’ version ‘0.9.2’ ** package ‘adagio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adagio) begin installing package ‘RPushbullet’ * installing *source* package ‘merDeriv’ ... ** this is package ‘merDeriv’ version ‘0.2-5’ ** package ‘merDeriv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (merDeriv) begin installing package ‘rsyslog’ * installing *source* package ‘desirability2’ ... ** this is package ‘desirability2’ version ‘0.2.0’ ** package ‘desirability2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desirability2) begin installing package ‘slackr’ * installing *source* package ‘RWiener’ ... ** this is package ‘RWiener’ version ‘1.3-3’ ** package ‘RWiener’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5BnZE5/R.INSTALL374e082aa8edfd/RWiener/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dwiener.c -o dwiener.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pwiener.c -o pwiener.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qwiener.c -o qwiener.o qwiener.c: In function ‘qwiener_d’: qwiener.c:45:10: warning: variable ‘pmax’ set but not used [-Wunused-but-set-variable] 45 | double pmax=1; | ^~~~ qwiener.c:44:10: warning: variable ‘pmin’ set but not used [-Wunused-but-set-variable] 44 | double pmin=0; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rwiener.c -o rwiener.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RWiener.so dwiener.o init.o pwiener.o qwiener.o rwiener.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5BnZE5/R.INSTALL374e082aa8edfd/RWiener/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RWiener/00new/RWiener/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RWiener) begin installing package ‘syslognet’ * installing *source* package ‘ollamar’ ... ** this is package ‘ollamar’ version ‘1.2.2’ ** package ‘ollamar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ollamar) begin installing package ‘telegram’ * installing *source* package ‘syslognet’ ... ** this is package ‘syslognet’ version ‘0.1.2.1’ ** package ‘syslognet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (syslognet) begin installing package ‘LPCM’ * installing *source* package ‘RPushbullet’ ... ** this is package ‘RPushbullet’ version ‘0.3.5’ ** package ‘RPushbullet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPushbullet) begin installing package ‘protoclust’ * installing *source* package ‘rsyslog’ ... ** this is package ‘rsyslog’ version ‘1.0.3’ ** package ‘rsyslog’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnSZOua/R.INSTALL3750911a8efc7c/rsyslog/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rsyslog.c -o rsyslog.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rsyslog.so rsyslog.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnSZOua/R.INSTALL3750911a8efc7c/rsyslog/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rsyslog/00new/rsyslog/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsyslog) begin installing package ‘stream’ * installing *source* package ‘redux’ ... ** this is package ‘redux’ version ‘1.1.5’ ** package ‘redux’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis Using PKG_LIBS=-lhiredis ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAemqNn/R.INSTALL374c243d106748/redux/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection.c -o connection.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c conversions.c -o conversions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subscribe.c -o subscribe.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o redux.so connection.o conversions.o registration.o subscribe.o -lhiredis -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAemqNn/R.INSTALL374c243d106748/redux/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redux/00new/redux/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redux) begin installing package ‘stabm’ * installing *source* package ‘priorsense’ ... ** this is package ‘priorsense’ version ‘1.2.0’ ** package ‘priorsense’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (priorsense) begin installing package ‘fastVoteR’ * installing *source* package ‘anticlust’ ... ** this is package ‘anticlust’ version ‘0.8.13’ ** package ‘anticlust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpupOKOp/R.INSTALL374038273835a4/anticlust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anticlust_init.c -o anticlust_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bicriterion_iterated_local_search_call.c -o bicriterion_iterated_local_search_call.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c categorical-contraints.c -o categorical-contraints.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dispersion_anticlustering.c -o dispersion_anticlustering.o dispersion_anticlustering.c: In function ‘dispersion_anticlustering’: dispersion_anticlustering.c:213:25: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 213 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dispersion_anticlustering.c:137:16: note: ‘best_partner’ was declared here 137 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance-anticlustering.c -o distance-anticlustering.o distance-anticlustering.c: In function ‘distance_anticlustering_’: distance-anticlustering.c:270:33: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 270 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ distance-anticlustering.c:187:16: note: ‘best_partner’ was declared here 187 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fast-kmeans-anticlustering.c -o fast-kmeans-anticlustering.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c free-memory.c -o free-memory.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kmeans-anticlustering.c -o kmeans-anticlustering.o kmeans-anticlustering.c: In function ‘kmeans_anticlustering’: kmeans-anticlustering.c:241:25: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 241 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmeans-anticlustering.c:177:16: note: ‘best_partner’ was declared here 177 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc-array-methods.c -o misc-array-methods.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c set-up-data-structures.c -o set-up-data-structures.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c three-phase-dispersion.c -o three-phase-dispersion.o three-phase-dispersion.c: In function ‘SearchAlgorithmDisperion’: three-phase-dispersion.c:443:12: warning: unused variable ‘elapsed_time’ [-Wunused-variable] 443 | double elapsed_time = (double) (end_time - start_time)/CLOCKS_PER_SEC; | ^~~~~~~~~~~~ three-phase-dispersion.c: In function ‘DirectPerturbationDispersion’: three-phase-dispersion.c:651:13: warning: ‘selectedElement’ may be used uninitialized [-Wmaybe-uninitialized] 651 | adding(selectedElement, k, s, min_distance_tuple, min_distance_per_cluster); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ three-phase-dispersion.c:549:30: note: ‘selectedElement’ was declared here 549 | int new_ind, ind1, ind2, selectedElement, minElement; | ^~~~~~~~~~~~~~~ three-phase-dispersion.c:654:15: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 654 | Rd[selectedGroup] = -1; | ^ three-phase-dispersion.c:610:13: note: ‘selectedGroup’ was declared here 610 | int selectedGroup; | ^~~~~~~~~~~~~ three-phase-dispersion.c: In function ‘CrossoverDispersion’: three-phase-dispersion.c:809:20: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 809 | if (s2[j] == selectedGroup) { | ^ three-phase-dispersion.c:698:15: note: ‘selectedGroup’ was declared here 698 | int i, j, selectedGroup; | ^~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c three_phase_search_dynamic_population_size.c -o three_phase_search_dynamic_population_size.o three_phase_search_dynamic_population_size.c: In function ‘DirectPerturbationDiversity’: three_phase_search_dynamic_population_size.c:605:17: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 605 | s[Rd[selectedGroup]] = i; | ^ three_phase_search_dynamic_population_size.c:573:13: note: ‘selectedGroup’ was declared here 573 | int selectedGroup; | ^~~~~~~~~~~~~ three_phase_search_dynamic_population_size.c:627:26: warning: ‘groupWithMaxAvgCon’ may be used uninitialized [-Wmaybe-uninitialized] 627 | if (SizeGroup[groupWithMaxAvgCon] < UB[groupWithMaxAvgCon]) { | ^ three_phase_search_dynamic_population_size.c:612:13: note: ‘groupWithMaxAvgCon’ was declared here 612 | int groupWithMaxAvgCon; | ^~~~~~~~~~~~~~~~~~ three_phase_search_dynamic_population_size.c: In function ‘process_partition’: three_phase_search_dynamic_population_size.c:668:12: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 668 | if (s1[i] == selectedGroup) { | ^ three_phase_search_dynamic_population_size.c:655:12: note: ‘selectedGroup’ was declared here 655 | int i, selectedGroup, processedCount, selectedElement; | ^~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c variance-objective.c -o variance-objective.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o anticlust.so anticlust_init.o bicriterion_iterated_local_search_call.o categorical-contraints.o dispersion_anticlustering.o distance-anticlustering.o fast-kmeans-anticlustering.o free-memory.o kmeans-anticlustering.o misc-array-methods.o set-up-data-structures.o three-phase-dispersion.o three_phase_search_dynamic_population_size.o variance-objective.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpupOKOp/R.INSTALL374038273835a4/anticlust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-anticlust/00new/anticlust/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anticlust) begin installing package ‘mlflow’ * installing *source* package ‘protoclust’ ... ** this is package ‘protoclust’ version ‘1.6.4’ ** package ‘protoclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptJD8p2/R.INSTALL3752213f5e8e32/protoclust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hier.c -o hier.o hier.c: In function ‘hier’: hier.c:194:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 194 | for(j = 0; j < imerge; j++) | ^~~ hier.c:204:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 204 | ii = lt(imerge+1,imerge,n); | ^~ hier.c: In function ‘minimaxpoint’: hier.c:442:10: warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized] 442 | return mm; | ^~ hier.c:428:7: note: ‘mm’ was declared here 428 | int mm; | ^~ hier.c: In function ‘findNN’: hier.c:346:29: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 346 | mincomplete = completelink(dmax, n, clusters[nn], nn, clusters[i], i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hier.c:328:7: note: ‘nn’ was declared here 328 | int nn; | ^~ hier.c: In function ‘hier’: hier.c:274:26: warning: ‘imerge’ may be used uninitialized [-Wmaybe-uninitialized] 274 | Cluster *cur = clusters[imerge]; | ^ hier.c:28:20: note: ‘imerge’ was declared here 28 | int i, j, k, ii, imerge, jmerge, reverse; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c protoclust_init.c -o protoclust_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o protoclust.so hier.o protoclust_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptJD8p2/R.INSTALL3752213f5e8e32/protoclust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-protoclust/00new/protoclust/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protoclust) begin installing package ‘firestorm’ * installing *source* package ‘kit’ ... ** this is package ‘kit’ version ‘0.0.21’ ** package ‘kit’ successfully unpacked and MD5 sums checked ** using staged installation *** On Linux and OpenMP supported! ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl62WwE/R.INSTALL3740476e5e8dfd/kit/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dup.c -o dup.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dupLen.c -o dupLen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fpos.c -o fpos.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iif.c -o iif.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nswitch.c -o nswitch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psort.c -o psort.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psum.c -o psum.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c share.c -o share.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topn.c -o topn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vswitch.c -o vswitch.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o kit.so dup.o dupLen.o fpos.o iif.o init.o nswitch.o psort.o psum.o share.o topn.o utils.o vswitch.o -fopenmp -lrt -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl62WwE/R.INSTALL3740476e5e8dfd/kit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kit/00new/kit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kit) begin installing package ‘rapidoc’ * installing *source* package ‘ggside’ ... ** this is package ‘ggside’ version ‘0.4.1’ ** package ‘ggside’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggside) begin installing package ‘redoc’ * installing *source* package ‘telegram’ ... ** this is package ‘telegram’ version ‘0.7.1’ ** package ‘telegram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (telegram) begin installing package ‘tomledit’ * installing *source* package ‘arf’ ... ** this is package ‘arf’ version ‘0.2.4’ ** package ‘arf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arf) begin installing package ‘vembedr’ * installing *source* package ‘slackr’ ... ** this is package ‘slackr’ version ‘3.3.1’ ** package ‘slackr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slackr) begin installing package ‘dipsaus’ * installing *source* package ‘LPCM’ ... ** this is package ‘LPCM’ version ‘0.47-6’ ** package ‘LPCM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LPCM) begin installing package ‘filearray’ * installing *source* package ‘botor’ ... ** this is package ‘botor’ version ‘0.4.1’ ** package ‘botor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (botor) begin installing package ‘shidashi’ * installing *source* package ‘rapidoc’ ... ** this is package ‘rapidoc’ version ‘9.3.4’ ** package ‘rapidoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapidoc) begin installing package ‘distill’ * installing *source* package ‘redoc’ ... ** this is package ‘redoc’ version ‘2.0.0.75’ ** package ‘redoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redoc) begin installing package ‘waysign’ * installing *source* package ‘readNSx’ ... ** this is package ‘readNSx’ version ‘0.0.6’ ** package ‘readNSx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpR6kB6j/R.INSTALL374001450f5087/readNSx/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rawToSEXP.cpp -o rawToSEXP.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readBCI2R.cpp -o readBCI2R.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readNSxDataPacket.cpp -o readNSxDataPacket.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o readNSx.so cpp11.o rawToSEXP.o readBCI2R.o readNSxDataPacket.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpR6kB6j/R.INSTALL374001450f5087/readNSx/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-readNSx/00new/readNSx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readNSx) begin installing package ‘reactlog’ * installing *source* package ‘mlr3data’ ... ** this is package ‘mlr3data’ version ‘0.9.0’ ** package ‘mlr3data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3data) begin installing package ‘watcher’ * installing *source* package ‘vembedr’ ... ** this is package ‘vembedr’ version ‘0.1.5’ ** package ‘vembedr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vembedr) begin installing package ‘gargoyle’ * installing *source* package ‘firestorm’ ... ** this is package ‘firestorm’ version ‘0.1.0’ ** package ‘firestorm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firestorm) begin installing package ‘knitcitations’ * installing *source* package ‘irace’ ... ** this is package ‘irace’ version ‘4.4.0’ ** package ‘irace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvmg6w7/R.INSTALL374d075da8c38c/irace/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/irace.c -o iracebin/irace.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/whereami.c -o iracebin/whereami.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/irace.o iracebin/whereami.o -o iracebin/irace gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/ablation.c -o iracebin/ablation.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/ablation.o iracebin/whereami.o -o iracebin/ablation gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy/target-runner-dummy.c -o dummy/target-runner-dummy.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native dummy/target-runner-dummy.o -o dummy/target-runner-dummy make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvmg6w7/R.INSTALL374d075da8c38c/irace/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-irace/00new/irace ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irace) begin installing package ‘teal.code’ * installing *source* package ‘distances’ ... ** this is package ‘distances’ version ‘0.1.13’ ** package ‘distances’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKf2ar4/R.INSTALL3740455dbf432a/distances/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distances-init.c -o distances-init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error.c -o error.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c get_dists.c -o get_dists.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c internal.c -o internal.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c max_dists.c -o max_dists.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nn_search.c -o nn_search.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nn_search_ann.cpp -o nn_search_ann.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o (cd libann && R_AR="ar" R_CXX="g++-15 -std=gnu++20" R_CPPFLAGS="-DNDEBUG -I/usr/local/include" R_CXXFLAGS="-fpic -g -O2 -Wall -pedantic -mtune=native " R_INCLUDE_DIR="/home/hornik/tmp/R/include" make) || exit 1; make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpKf2ar4/R.INSTALL3740455dbf432a/distances/src/libann' g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/ANN.cpp -o src/ANN.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/brute.cpp -o src/brute.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_tree.cpp -o src/kd_tree.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_util.cpp -o src/kd_util.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_split.cpp -o src/kd_split.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_dump.cpp -o src/kd_dump.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_search.cpp -o src/kd_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_pr_search.cpp -o src/kd_pr_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/kd_fix_rad_search.cpp -o src/kd_fix_rad_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/bd_tree.cpp -o src/bd_tree.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/bd_search.cpp -o src/bd_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/bd_pr_search.cpp -o src/bd_pr_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/bd_fix_rad_search.cpp -o src/bd_fix_rad_search.o g++-15 -std=gnu++20 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R/include" -c src/perf.cpp -o src/perf.o ar -rcs libann.a src/ANN.o src/brute.o src/kd_tree.o src/kd_util.o src/kd_split.o src/kd_dump.o src/kd_search.o src/kd_pr_search.o src/kd_fix_rad_search.o src/bd_tree.o src/bd_search.o src/bd_pr_search.o src/bd_fix_rad_search.o src/perf.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpKf2ar4/R.INSTALL3740455dbf432a/distances/src/libann' g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o distances.so distances-init.o error.o get_dists.o internal.o max_dists.o nn_search.o nn_search_ann.o utils.o libann/libann.a -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKf2ar4/R.INSTALL3740455dbf432a/distances/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distances/00new/distances/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distances) begin installing package ‘teal.logger’ * installing *source* package ‘reactlog’ ... ** this is package ‘reactlog’ version ‘1.1.1’ ** package ‘reactlog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactlog) begin installing package ‘teal.widgets’ * installing *source* package ‘mlflow’ ... ** this is package ‘mlflow’ version ‘3.9.0’ ** package ‘mlflow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlflow) begin installing package ‘shinyvalidate’ * installing *source* package ‘gtExtras’ ... ** this is package ‘gtExtras’ version ‘0.6.2’ ** package ‘gtExtras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtExtras) begin installing package ‘pharmaRTF’ * installing *source* package ‘stabm’ ... ** this is package ‘stabm’ version ‘1.2.2’ ** package ‘stabm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stabm) begin installing package ‘gMCPLite’ * installing *source* package ‘shidashi’ ... ** this is package ‘shidashi’ version ‘0.1.6’ ** package ‘shidashi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shidashi) begin installing package ‘rpact’ * installing *source* package ‘gargoyle’ ... ** this is package ‘gargoyle’ version ‘0.0.1’ ** package ‘gargoyle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gargoyle) begin installing package ‘graphicalMCP’ * installing *source* package ‘shinyvalidate’ ... ** this is package ‘shinyvalidate’ version ‘0.1.3’ ** package ‘shinyvalidate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyvalidate) begin installing package ‘simdata’ * installing *source* package ‘teal.logger’ ... ** this is package ‘teal.logger’ version ‘0.4.1’ ** package ‘teal.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.logger) begin installing package ‘probably’ * installing *source* package ‘teal.code’ ... ** this is package ‘teal.code’ version ‘0.7.1’ ** package ‘teal.code’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.code) begin installing package ‘mirai’ * installing *source* package ‘distill’ ... ** this is package ‘distill’ version ‘1.6’ ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) begin installing package ‘ezcox’ * installing *source* package ‘pharmaRTF’ ... ** this is package ‘pharmaRTF’ version ‘0.1.4’ ** package ‘pharmaRTF’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pharmaRTF) begin installing package ‘freesurferformats’ * installing *source* package ‘knitcitations’ ... ** this is package ‘knitcitations’ version ‘1.0.12’ ** package ‘knitcitations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitcitations) begin installing package ‘rtables.officer’ * installing *source* package ‘teal.widgets’ ... ** this is package ‘teal.widgets’ version ‘0.6.0’ ** package ‘teal.widgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.widgets) begin installing package ‘ggstatsplot’ * installing *source* package ‘censored’ ... ** this is package ‘censored’ version ‘0.3.3’ ** package ‘censored’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censored) begin installing package ‘h3r’ * installing *source* package ‘simdata’ ... ** this is package ‘simdata’ version ‘0.4.1’ ** package ‘simdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simdata) begin installing package ‘fastverse’ * installing *source* package ‘graphicalMCP’ ... ** this is package ‘graphicalMCP’ version ‘0.2.8’ ** package ‘graphicalMCP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graphicalMCP) begin installing package ‘archetypal’ * installing *source* package ‘mirai’ ... ** this is package ‘mirai’ version ‘2.6.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirai) begin installing package ‘aion’ * installing *source* package ‘Rdsdp’ ... ** this is package ‘Rdsdp’ version ‘1.0.6’ ** package ‘Rdsdp’ successfully unpacked and MD5 sums checked ** using staged installation ./configure: line 2303: -z: command not found Using bundled DSDP checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-15 -E R_INCLUDE_DIR=/home/hornik/tmp/R/include configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rdsdp.c -o Rdsdp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rreadsdpa.c -o Rreadsdpa.o Rreadsdpa.c: In function ‘ReadSDPA2’: Rreadsdpa.c:489:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 489 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ Rreadsdpa.c:488:7: warning: variable ‘fscanf_return_int’ set but not used [-Wunused-but-set-variable] 488 | int fscanf_return_int; | ^~~~~~~~~~~~~~~~~ Rreadsdpa.c: In function ‘DSDPReadOptions2’: Rreadsdpa.c:1021:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 1021 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ (cd dsdp && \ (make dsdplibrary CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include " AR="ar" RANLIB="ranlib") && \ touch dsdp.ts) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp' ========================================== Compiling DSDP5 For help with installation problems, please send EVERYTHING printed out below to the developers ========================================== On Mon Mar 2 18:59:10 CET 2026 on anduin2 Machine characteristics: Linux anduin2 6.16.7+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.16.7-1 (2025-09-11) x86_64 GNU/Linux ----------------------------------------- Using C compiler: gcc-15 Using compiler options: -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include ----------------------------------------- Current Directory: /home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp Using DSDP directory: ../../ ========================================== cd src; make all make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src' cd solver; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/solver' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualalg.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualimpl.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcops.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmat.c dsdpschurmat.c: In function ‘DSDPSetFixedVariables’: dsdpschurmat.c:696:10: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 696 | int i,info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcg.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpconverge.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetup.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetoptions.c dsdpsetoptions.c: In function ‘DSDPReadOptions’: dsdpsetoptions.c:152:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 152 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ dsdpsetoptions.c:147:9: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 147 | int i,info,line=0; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetdata.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdprescone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpobjcone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpprintout.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmatadd.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpx.c dsdpx.c: In function ‘DSDPComputeX’: dsdpx.c:57:76: warning: variable ‘rpobjerr’ set but not used [-Wunused-but-set-variable] 57 | double pobj=0,ppobj2=0,ddobj,tracexs=0,tracexs2=0,rpinfeas=0,rpinfeas2=0,rpobjerr=0; | ^~~~~~~~ ar cr ../..//lib/libdsdp.a dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/solver' rm -f dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/solver' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/solver' cd sdp; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/sdp' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpstep.c dsdpstep.c: In function ‘ComputeStepROBUST’: dsdpstep.c:283:10: warning: variable ‘LDA’ set but not used [-Wunused-but-set-variable] 283 | int N, LDA, LWORK; | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c printsdpa.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpconevec.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpsss.c sdpsss.c: In function ‘CountNonzeros’: sdpsss.c:59:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 59 | for (j=0;jn; | ^~~ dlpack.c: In function ‘DenseSymPSDNormF2’: dlpack.c:423:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 423 | int info; | ^~~~ dlpack.c: In function ‘DSDPXMatPCreateWithData’: dlpack.c:587:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 587 | double dtmp; | ^~~~ dlpack.c: In function ‘DvechmatGetRowAdd’: dlpack.c:717:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 717 | int info; | ^~~~ dlpack.c: In function ‘DSDPGetDMat’: dlpack.c:939:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 939 | double dtmp; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dufull.c dufull.c: In function ‘DSDPGetEigs2’: dufull.c:163:23: warning: variable ‘LDZ’ set but not used [-Wunused-but-set-variable] 163 | ffinteger N=n,LDA=n,LDZ=n,LWORK=nd,INFO=0; | ^~~ dufull.c: In function ‘DTRUMatSolve’: dufull.c:255:13: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] 255 | ffinteger ierr,INFO=0,NRHS=1,LDA=A->LDA,LDB=A->LDA,N=A->n; | ^~~~ dufull.c: In function ‘DSDPLAPACKSUDualMatCreate2P’: dufull.c:822:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 822 | int info; | ^~~~ dufull.c: In function ‘DenseSymPSDNormF2’: dufull.c:855:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 855 | int info; | ^~~~ dufull.c: In function ‘DSDPXMatUCreateWithData’: dufull.c:958:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 958 | double dtmp; | ^~~~ dufull.c: In function ‘DvecumatGetRowAdd’: dufull.c:1075:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 1075 | int info; | ^~~~ dufull.c: In function ‘DSDPGetDUMat’: dufull.c:1302:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 1302 | double dtmp; | ^~~~ dufull.c: At top level: dufull.c:340:12: warning: ‘DTRUMatView2’ defined but not used [-Wunused-function] 340 | static int DTRUMatView2(void* AA){ | ^~~~~~~~~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpvec.c sdpvec.c: In function ‘DSDPVecSetBasis’: sdpvec.c:138:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 138 | int info; | ^~~~ sdpvec.c: In function ‘DSDPVecWAXPY’: sdpvec.c:341:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 341 | int info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c identity.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c spds.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c zeromat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c onemat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c diag.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c rmmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat2.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dtrsm2.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpmatx.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpnfac.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdporder.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpalloc.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpsymb.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpxlist.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpdvct.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpexit.c ar cr ../..//lib/libdsdp.a vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/vecmat' rm -f vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/vecmat' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/vecmat' cd sys; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/sys' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdperror.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdploginfo.c dsdploginfo.c: In function ‘DSDPLogInfoAllow’: dsdploginfo.c:70:10: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] 70 | char* ierr; | ^~~~ dsdploginfo.c: In function ‘DSDPLogFInfo’: dsdploginfo.c:118:15: warning: variable ‘urank’ set but not used [-Wunused-but-set-variable] 118 | int urank; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdplog.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdptime.c ar cr ../..//lib/libdsdp.a dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/sys' rm -f dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/sys' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/sys' cd bounds; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/bounds' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dbounds.c dbounds.c: In function ‘BConeComputeS’: dbounds.c:90:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 90 | int i,ii,info; | ^~~~ dbounds.c: In function ‘LPANorm2’: dbounds.c:366:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 366 | int i,ii,info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c allbounds.c allbounds.c: In function ‘LUBoundsHessian’: allbounds.c:100:18: warning: variable ‘asrs’ set but not used [-Wunused-but-set-variable] 100 | double assa,as,asrs=0,sl,su; | ^~~~ ar cr ../..//lib/libdsdp.a dbounds.o allbounds.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/bounds' rm -f dbounds.o allbounds.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/bounds' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src/bounds' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp/src' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src/dsdp' gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rdsdp.so Rdsdp.o Rreadsdpa.o -Ldsdp/lib -ldsdp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp7Xxu5/R.INSTALL3740084ee078d5/Rdsdp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdsdp/00new/Rdsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdsdp) begin installing package ‘dimensio’ * installing *source* package ‘fastverse’ ... ** this is package ‘fastverse’ version ‘0.3.4’ ** package ‘fastverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastverse) begin installing package ‘tabula’ * installing *source* package ‘h3r’ ... ** this is package ‘h3r’ version ‘0.1.2’ ** package ‘h3r’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphBas8w/R.INSTALL375ee51f27df89/h3r/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rDirectedEdges.c -o h3rDirectedEdges.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rHierarchy.c -o h3rHierarchy.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rIndexing.c -o h3rIndexing.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rInspection.c -o h3rInspection.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rMiscellaneous.c -o h3rMiscellaneous.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rRegions.c -o h3rRegions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rTraversal.c -o h3rTraversal.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rUtils.c -o h3rUtils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h3rVertexes.c -o h3rVertexes.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_recheck/Library/h3lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o h3r.so h3rDirectedEdges.o h3rHierarchy.o h3rIndexing.o h3rInspection.o h3rMiscellaneous.o h3rRegions.o h3rTraversal.o h3rUtils.o h3rVertexes.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphBas8w/R.INSTALL375ee51f27df89/h3r/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-h3r/00new/h3r/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (h3r) begin installing package ‘mapedit’ * installing *source* package ‘rtdists’ ... ** this is package ‘rtdists’ version ‘0.11-5’ ** package ‘rtdists’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFdD7qY/R.INSTALL374e0e6d43ae81/rtdists/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RFastDM.cpp -o RFastDM.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rtdists.so RFastDM.o RcppExports.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFdD7qY/R.INSTALL374e0e6d43ae81/rtdists/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rtdists/00new/rtdists/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtdists) begin installing package ‘mlr3fselect’ * installing *source* package ‘ggalign’ ... ** this is package ‘ggalign’ version ‘1.2.0’ ** package ‘ggalign’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggalign) begin installing package ‘knockoff’ * installing *source* package ‘gMCPLite’ ... ** this is package ‘gMCPLite’ version ‘0.1.7’ ** package ‘gMCPLite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl2pxKW/R.INSTALL375bc34b3bb5c5/gMCPLite/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gMCP.c -o gMCP.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gMCPLite-init.c -o gMCPLite-init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcp.c -o mcp.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gMCPLite.so gMCP.o gMCPLite-init.o mcp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl2pxKW/R.INSTALL375bc34b3bb5c5/gMCPLite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gMCPLite/00new/gMCPLite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gMCPLite) begin installing package ‘rush’ * installing *source* package ‘mapedit’ ... ** this is package ‘mapedit’ version ‘0.8.0’ ** package ‘mapedit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapedit) begin installing package ‘filtro’ * installing *source* package ‘knockoff’ ... ** this is package ‘knockoff’ version ‘0.3.6’ ** package ‘knockoff’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knockoff) begin installing package ‘rpymat’ * installing *source* package ‘aion’ ... ** this is package ‘aion’ version ‘1.7.0’ ** package ‘aion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aion) begin installing package ‘teal.data’ * installing *source* package ‘ggstatsplot’ ... ** this is package ‘ggstatsplot’ version ‘0.13.5’ ** package ‘ggstatsplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstatsplot) begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘rtables.officer’ ... ** this is package ‘rtables.officer’ version ‘0.1.2’ ** package ‘rtables.officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtables.officer) begin installing package ‘roxy.shinylive’ * installing *source* package ‘ezcox’ ... ** this is package ‘ezcox’ version ‘1.0.4’ ** package ‘ezcox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ezcox) begin installing package ‘future.mirai’ * installing *source* package ‘freesurferformats’ ... ** this is package ‘freesurferformats’ version ‘1.0.0’ ** package ‘freesurferformats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freesurferformats) begin installing package ‘UCSCXenaShiny’ * installing *source* package ‘DMCfun’ ... ** this is package ‘DMCfun’ version ‘4.0.1’ ** package ‘DMCfun’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQyXiJV/R.INSTALL37404363191389/DMCfun/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dmcCppR.cpp -o dmcCppR.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inDMC.cpp -o inDMC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c outDMC.cpp -o outDMC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c runDMC.cpp -o runDMC.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DMCfun.so RcppExports.o dmcCppR.o inDMC.o outDMC.o runDMC.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQyXiJV/R.INSTALL37404363191389/DMCfun/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DMCfun/00new/DMCfun/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DMCfun) * installing *source* package ‘dimensio’ ... ** this is package ‘dimensio’ version ‘0.14.1’ ** package ‘dimensio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dimensio) begin installing package ‘kairos’ begin installing package ‘nexus’ * installing *source* package ‘tabula’ ... ** this is package ‘tabula’ version ‘3.3.2’ ** package ‘tabula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tabula) * installing *source* package ‘rush’ ... ** this is package ‘rush’ version ‘0.4.1’ ** package ‘rush’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rush) * installing *source* package ‘roxy.shinylive’ ... ** this is package ‘roxy.shinylive’ version ‘1.0.0’ ** package ‘roxy.shinylive’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxy.shinylive) * installing *source* package ‘future.mirai’ ... ** this is package ‘future.mirai’ version ‘0.10.1’ ** package ‘future.mirai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.mirai) * installing *source* package ‘filtro’ ... ** this is package ‘filtro’ version ‘0.2.0’ ** package ‘filtro’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filtro) * installing *source* package ‘rpymat’ ... ** this is package ‘rpymat’ version ‘0.1.8’ ** package ‘rpymat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpymat) begin installing package ‘rpyANTs’ * installing *source* package ‘probably’ ... ** this is package ‘probably’ version ‘1.2.0’ ** package ‘probably’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (probably) * installing *source* package ‘archetypal’ ... ** this is package ‘archetypal’ version ‘1.3.1’ ** package ‘archetypal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archetypal) * installing *source* package ‘fastVoteR’ ... ** this is package ‘fastVoteR’ version ‘0.0.1’ ** package ‘fastVoteR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJpW53V/R.INSTALL37528835607a4d/fastVoteR/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c av.cpp -o av.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pav.cpp -o pav.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phragmen.cpp -o phragmen.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sav.cpp -o sav.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastVoteR.so RcppExports.o av.o pav.o phragmen.o sav.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJpW53V/R.INSTALL37528835607a4d/fastVoteR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastVoteR/00new/fastVoteR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastVoteR) * installing *source* package ‘teal.data’ ... ** this is package ‘teal.data’ version ‘0.8.0’ ** package ‘teal.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.data) begin installing package ‘teal.slice’ begin installing package ‘teal.reporter’ * installing *source* package ‘brotli’ ... ** this is package ‘brotli’ version ‘1.3.2’ ** package ‘brotli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdtn1eJ/R.INSTALL374bc67d099298/brotli/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrapper.c -o wrapper.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references.c -o enc/backward_references.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/bit_cost.c -o enc/bit_cost.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/block_splitter.c -o enc/block_splitter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/cluster.c -o enc/cluster.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment.c -o enc/compress_fragment.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encode.c -o enc/encode.o enc/encode.c:1473:20: warning: argument 5 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 1473 | const uint8_t* input_buffer, size_t* encoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from enc/encode.c:9: include/brotli/encode.h:314:19: note: previously declared as a variable length array ‘const uint8_t[input_size]’ {aka ‘const unsigned char[input_size]’} 314 | const uint8_t input_buffer[BROTLI_ARRAY_PARAM(input_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ enc/encode.c:1474:14: warning: argument 7 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 1474 | uint8_t* encoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/encode.h:316:13: note: previously declared as a variable length array ‘uint8_t[*encoded_size]’ {aka ‘unsigned char[*encoded_size]’} 316 | uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(*encoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/entropy_encode.c -o enc/entropy_encode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/histogram.c -o enc/histogram.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/literal_cost.c -o enc/literal_cost.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/memory.c -o enc/memory.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/metablock.c -o enc/metablock.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/static_dict.c -o enc/static_dict.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/utf8_util.c -o enc/utf8_util.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/bit_reader.c -o dec/bit_reader.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/huffman.c -o dec/huffman.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/state.c -o dec/state.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/decode.c -o dec/decode.o dec/decode.c:2036:41: warning: argument 2 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 2036 | size_t encoded_size, const uint8_t* encoded_buffer, size_t* decoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from dec/decode.c:7: include/brotli/decode.h:204:19: note: previously declared as a variable length array ‘const uint8_t[encoded_size]’ {aka ‘const unsigned char[encoded_size]’} 204 | const uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(encoded_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dec/decode.c:2037:14: warning: argument 4 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 2037 | uint8_t* decoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/decode.h:206:13: note: previously declared as a variable length array ‘uint8_t[*decoded_size]’ {aka ‘unsigned char[*decoded_size]’} 206 | uint8_t decoded_buffer[BROTLI_ARRAY_PARAM(*decoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/dictionary.c -o common/dictionary.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references_hq.c -o enc/backward_references_hq.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/dictionary_hash.c -o enc/dictionary_hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/transform.c -o common/transform.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encoder_dict.c -o enc/encoder_dict.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/platform.c -o common/platform.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/context.c -o common/context.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/constants.c -o common/constants.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/command.c -o enc/command.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/fast_log.c -o enc/fast_log.o ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o brotli.so wrapper.o -Lenc -lstatbrotli -L/home/hornik/tmp/R/lib -lR gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools/brotli.c -o tools/brotli.o mkdir -p ../inst/bin g++-15 -std=gnu++20 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -Wl,-O1 rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdtn1eJ/R.INSTALL374bc67d099298/brotli/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brotli/00new/brotli/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brotli) begin installing package ‘reqres’ * installing *source* package ‘mlr3fselect’ ... ** this is package ‘mlr3fselect’ version ‘1.5.0’ ** package ‘mlr3fselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3fselect) * installing *source* package ‘httk’ ... ** this is package ‘httk’ version ‘2.7.4’ ** package ‘httk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUDLwJo/R.INSTALL37480927639f7b/httk/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dermal.c -o dermal.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dermal_1subcomp.c -o dermal_1subcomp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fetal_pbtk_vols_out_v2.c -o fetal_pbtk_vols_out_v2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model1comp.c -o model1comp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model1comp_lifestage.c -o model1comp_lifestage.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp.c -o model3comp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp2.c -o model3comp2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp_lifestage.c -o model3comp_lifestage.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_1tri_pbtk_v2.c -o model_1tri_pbtk_v2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_aerosol_pbtk.c -o model_aerosol_pbtk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_gas_pbtk.c -o model_gas_pbtk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modelpbtk.c -o modelpbtk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modelpbtk_lifestage.c -o modelpbtk_lifestage.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c skin_mm.c -o skin_mm.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o httk.so dermal.o dermal_1subcomp.o fetal_pbtk_vols_out_v2.o init.o model1comp.o model1comp_lifestage.o model3comp.o model3comp2.o model3comp_lifestage.o model_1tri_pbtk_v2.o model_aerosol_pbtk.o model_gas_pbtk.o modelpbtk.o modelpbtk_lifestage.o skin_mm.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUDLwJo/R.INSTALL37480927639f7b/httk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-httk/00new/httk/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httk) * installing *source* package ‘kairos’ ... ** this is package ‘kairos’ version ‘2.3.0’ ** package ‘kairos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kairos) * installing *source* package ‘nexus’ ... ** this is package ‘nexus’ version ‘0.6.0’ ** package ‘nexus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nexus) * installing *source* package ‘projpred’ ... ** this is package ‘projpred’ version ‘2.10.0’ ** package ‘projpred’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqNBthk/R.INSTALL374dd06aace970/projpred/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glmfun.cpp -o glmfun.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o projpred.so RcppExports.o glmfun.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqNBthk/R.INSTALL374dd06aace970/projpred/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-projpred/00new/projpred/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (projpred) * installing *source* package ‘rpyANTs’ ... ** this is package ‘rpyANTs’ version ‘0.0.6’ ** package ‘rpyANTs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpyANTs) * installing *source* package ‘UCSCXenaShiny’ ... ** this is package ‘UCSCXenaShiny’ version ‘2.2.0’ ** package ‘UCSCXenaShiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSCXenaShiny) * installing *source* package ‘teal.reporter’ ... ** this is package ‘teal.reporter’ version ‘0.6.1’ ** package ‘teal.reporter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.reporter) * installing *source* package ‘reqres’ ... ** this is package ‘reqres’ version ‘1.2.0’ ** package ‘reqres’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVSPfxX/R.INSTALL3767f1251ddbf/reqres/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reqres.c -o reqres.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o reqres.so reqres.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVSPfxX/R.INSTALL3767f1251ddbf/reqres/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reqres/00new/reqres/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reqres) begin installing package ‘fiery’ begin installing package ‘firesale’ * installing *source* package ‘firesale’ ... ** this is package ‘firesale’ version ‘0.1.1’ ** package ‘firesale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesale) * installing *source* package ‘teal.slice’ ... ** this is package ‘teal.slice’ version ‘0.7.1’ ** package ‘teal.slice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.slice) * installing *source* package ‘watcher’ ... ** this is package ‘watcher’ version ‘0.1.5’ ** package ‘watcher’ successfully unpacked and MD5 sums checked ** using staged installation Compiling 'libfswatch' from source... Detecting 'cmake'... /usr/bin/cmake -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Gettext: /usr/bin/msgmerge (found version "0.23.2") -- Found Intl: built in to C library -- Looking for C++ include getopt.h -- Looking for C++ include getopt.h - found -- Looking for getopt_long -- Looking for getopt_long - found -- Performing Test HAVE_STRUCT_STAT_ST_MTIME -- Performing Test HAVE_STRUCT_STAT_ST_MTIME - Success -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC - Failed -- Looking for C++ include sys/inotify.h -- Looking for C++ include sys/inotify.h - found -- Looking for C++ include sys/event.h -- Looking for C++ include sys/event.h - not found -- Looking for C++ include port.h -- Looking for C++ include port.h - not found -- Looking for FindFirstChangeNotification -- Looking for FindFirstChangeNotification - not found -- Configuring done (1.9s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpYqCzvN/R.INSTALL3758594c7abe9/watcher/fswatch-5c443d2p gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYqCzvN/R.INSTALL3758594c7abe9/watcher/fswatch-5c443d2p' [ 7%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/cevent.cpp.o [ 15%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch.cpp.o [ 23%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch_log.cpp.o [ 30%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/event.cpp.o [ 38%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/filter.cpp.o [ 46%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/libfswatch_exception.cpp.o [ 53%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor.cpp.o [ 61%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor_factory.cpp.o [ 69%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/path_utils.cpp.o [ 76%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/poll_monitor.cpp.o [ 84%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/string/string_utils.cpp.o [ 92%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/inotify_monitor.cpp.o [100%] Linking CXX static library libfswatch.b [100%] Built target libfswatch Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYqCzvN/R.INSTALL3758594c7abe9/watcher/fswatch-5c443d2p' ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYqCzvN/R.INSTALL3758594c7abe9/watcher/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c link.cpp -o link.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c watcher.c -o watcher.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o watcher.so init.o link.o watcher.o ../install/lib/libfswatch.b -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYqCzvN/R.INSTALL3758594c7abe9/watcher/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-watcher/00new/watcher/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (watcher) * installing *source* package ‘fiery’ ... ** this is package ‘fiery’ version ‘1.5.0’ ** package ‘fiery’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fiery) * installing *source* package ‘waysign’ ... ** this is package ‘waysign’ version ‘0.1.1’ ** package ‘waysign’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball) Using rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o if [ -d ./vendor ]; then \ echo "=== Using offline vendor directory ==="; \ mkdir -p /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo/config.toml; \ elif [ -f ./rust/vendor.tar.xz ]; then \ echo "=== Using offline vendor tarball ==="; \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo/config.toml; \ fi === Using offline vendor tarball === export CARGO_HOME=/home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.103 Compiling quote v1.0.42 Compiling unicode-ident v1.0.22 Compiling extendr-ffi v0.8.1 Compiling paste v1.0.15 Compiling syn v2.0.111 Compiling extendr-api v0.8.1 Compiling once_cell v1.21.3 Compiling smallvec v1.15.1 Compiling path-tree v0.8.1 Compiling extendr-macros v0.8.1 Compiling waysign v0.1.0 (/home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 33.43s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o waysign.so entrypoint.o -L./rust/target/release -lwaysign -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/.cargo /home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXQqSNa/R.INSTALL37567a3ebf32c0/waysign/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-waysign/00new/waysign/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waysign) begin installing package ‘routr’ * installing *source* package ‘dipsaus’ ... ** this is package ‘dipsaus’ version ‘0.3.3’ ** package ‘dipsaus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKRQVbo/R.INSTALL375519388b864d/dipsaus/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’: rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(jj = begin; jj < end; jj++, pt_cm2++){ | ~~~^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKRQVbo/R.INSTALL375519388b864d/dipsaus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dipsaus/00new/dipsaus/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dipsaus) begin installing package ‘threeBrain’ * installing *source* package ‘routr’ ... ** this is package ‘routr’ version ‘2.0.0’ ** package ‘routr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (routr) begin installing package ‘fireproof’ begin installing package ‘firesafety’ * installing *source* package ‘tomledit’ ... ** this is package ‘tomledit’ version ‘0.1.1’ ** package ‘tomledit’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball) Using rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.94 Compiling build-print v0.1.1 Compiling unicode-ident v1.0.18 Compiling extendr-ffi v0.8.0 Compiling paste v1.0.15 Compiling quote v1.0.40 Compiling syn v2.0.100 Compiling equivalent v1.0.2 Compiling extendr-api v0.8.0 Compiling hashbrown v0.15.2 Compiling indexmap v2.9.0 Compiling once_cell v1.21.3 Compiling toml_datetime v0.6.8 Compiling winnow v0.7.6 Compiling extendr-macros v0.8.0 Compiling toml_edit v0.22.24 Compiling tomledit v0.1.0 (/home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 42.90s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o tomledit.so entrypoint.o -L./rust/target/release -ltomledit -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/.cargo /home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprxivCs/R.INSTALL37541421e4b851/tomledit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tomledit/00new/tomledit/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tomledit) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.36.1’ ** package ‘MultiAssayExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) * installing *source* package ‘firesafety’ ... ** this is package ‘firesafety’ version ‘0.1.0’ ** package ‘firesafety’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesafety) * installing *source* package ‘fireproof’ ... ** this is package ‘fireproof’ version ‘0.1.0’ ** package ‘fireproof’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fireproof) * installing *source* package ‘filearray’ ... ** this is package ‘filearray’ version ‘0.2.0’ ** package ‘filearray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLIAtBL/R.INSTALL375573441a8a6c/filearray/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collapse.cpp -o collapse.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conversion.cpp -o conversion.o conversion.cpp: In function ‘SEXPREC* convert_as2(SEXP, SEXP, SEXPTYPE)’: conversion.cpp:293:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 293 | if( TYPEOF(y) != type ){ | ~~~~~~~~~~^~~~~~~ conversion.cpp: In function ‘void realToFloat(double*, float*, size_t)’: conversion.cpp:405:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 405 | for(R_xlen_t ii = 0; ii < nelem; ii++, x++, y++){ | ~~~^~~~~~~ conversion.cpp: In function ‘void floatToReal(float*, double*, size_t)’: conversion.cpp:415:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | for(R_xlen_t ii = 0; ii < nelem; ii++, y++, x++){ | ~~~^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core.cpp -o core.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interfaces.cpp -o interfaces.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load.cpp -o load.o load.cpp: In function ‘SEXPREC* FARR_subset_sequential(const std::string&, const int64_t&, SEXP, SEXPTYPE, SEXP, int64_t, int64_t)’: load.cpp:66:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 66 | if( TYPEOF(ret) != array_memory_sxptype(array_type) ){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c map.cpp -o map.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mapreduce.cpp -o mapreduce.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c save.cpp -o save.o save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = unsigned char; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = float; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = double; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = int; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c serialize.cpp -o serialize.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c threadSettings.cpp -o threadSettings.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o utils.cpp: In function ‘void set_buffer(SEXP, int, size_t, int)’: utils.cpp:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if( buf_bytes > buffer_bytes ){ | ~~~~~~~~~~^~~~~~~~~~~~~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o filearray.so RcppExports.o collapse.o conversion.o core.o interfaces.o load.o map.o mapreduce.o save.o serialize.o threadSettings.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLIAtBL/R.INSTALL375573441a8a6c/filearray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-filearray/00new/filearray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filearray) begin installing package ‘ieegio’ * installing *source* package ‘threeBrain’ ... ** this is package ‘threeBrain’ version ‘1.2.0’ ** package ‘threeBrain’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (threeBrain) * installing *source* package ‘ieegio’ ... ** this is package ‘ieegio’ version ‘0.0.9’ ** package ‘ieegio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ieegio) * installing *source* package ‘stream’ ... ** this is package ‘stream’ version ‘2.0-3’ ** package ‘stream’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVBX9JT/R.INSTALL37522f58ec2d30/stream/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c evoStream.cpp -o evoStream.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH.cpp -o BIRCH.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO.cpp -o BICO.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DBSTREAM.cpp -o DBSTREAM.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from DBSTREAM.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R/include/R.h:73, from DBSTREAM.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R/include/R_ext/Error.h:89:17: warning: infinite recursion detected [-Winfinite-recursion] 89 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:188:17: note: in expansion of macro ‘warning’ 188 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:131: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:189:19: note: recursive call 189 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DStream.cpp -o DStream.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmeansw.cc -o kmeansw.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NumericVector.cpp -o NumericVector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO/l2metric.cpp -o BICO/l2metric.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO/point.cpp -o BICO/point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO/pointcentroid.cpp -o BICO/pointcentroid.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO/realspaceprovider.cpp -o BICO/realspaceprovider.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BICO/squaredl2metric.cpp -o BICO/squaredl2metric.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/CFLeafNode.cpp -o BIRCH/CFLeafNode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/CFNode.cpp -o BIRCH/CFNode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/CFNonLeafNode.cpp -o BIRCH/CFNonLeafNode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/CFTree.cpp -o BIRCH/CFTree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/ClusteringFeature.cpp -o BIRCH/ClusteringFeature.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BIRCH/Util.cpp -o BIRCH/Util.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stream.so evoStream.o BIRCH.o BICO.o DBSTREAM.o DStream.o init.o kmeansw.o NumericVector.o RcppExports.o BICO/l2metric.o BICO/point.o BICO/pointcentroid.o BICO/realspaceprovider.o BICO/squaredl2metric.o BIRCH/CFLeafNode.o BIRCH/CFNode.o BIRCH/CFNonLeafNode.o BIRCH/CFTree.o BIRCH/ClusteringFeature.o BIRCH/Util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVBX9JT/R.INSTALL37522f58ec2d30/stream/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stream/00new/stream/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stream) * installing *source* package ‘rpact’ ... ** this is package ‘rpact’ version ‘4.3.0’ ** package ‘rpact’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjGkomI/R.INSTALL375be3681258/rpact/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251.cpp -o f_as251.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251_fortran.f -o f_as251_fortran.o f_as251_fortran.f:565:72: 565 | ZEXP(Z) = EXP(Z) | 1 Warning: Obsolescent feature: Statement function at (1) f_as251_fortran.f:793:5: 793 | 30 IF (DLG .LE. EPS1) GO TO 50 | 1 Warning: Label 30 at (1) defined but not used [-Wunused-label] f_as251_fortran.f:192:72: 192 | ESTT(LVL) = ESTR | ^ Warning: ‘estr’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:24:47: 24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR, | ^~~~ note: ‘estr’ was declared here f_as251_fortran.f:161:72: 161 | DLG = ABS(CONTRB - SUM) | ^ Warning: ‘contrb’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:24:20: 24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR, | ^~~~~~ note: ‘contrb’ was declared here f_as251_fortran.f:247:72: 247 | BOUND = PART3 | ^ Warning: ‘part3’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:23:46: 23 | * ERFAC, EL, EL1, BOUND, PART0, PART2, PART3, FUNC0, FUNC2, | ^~~~~ note: ‘part3’ was declared here g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_assertions.cpp -o f_assertions.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_count_data_estimation.cpp -o f_count_data_estimation.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_fisher_combination_test.cpp -o f_design_fisher_combination_test.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_group_sequential.cpp -o f_design_group_sequential.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_means.cpp -o f_simulation_base_means.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_rates.cpp -o f_simulation_base_rates.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_survival.cpp -o f_simulation_base_survival.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_survival_utilities.cpp -o f_simulation_survival_utilities.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_utilities.cpp -o f_utilities.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rpact.so RcppExports.o f_as251.o f_as251_fortran.o f_assertions.o f_count_data_estimation.o f_design_fisher_combination_test.o f_design_group_sequential.o f_simulation_base_means.o f_simulation_base_rates.o f_simulation_base_survival.o f_simulation_survival_utilities.o f_utilities.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjGkomI/R.INSTALL375be3681258/rpact/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rpact/00new/rpact/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpact) * installing *source* package ‘GJRM’ ... ** this is package ‘GJRM’ version ‘0.2-6.8’ ** package ‘GJRM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GJRM) * installing *source* package ‘dggridR’ ... ** this is package ‘dggridR’ version ‘3.1.1’ ** package ‘dggridR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr0YYBY/R.INSTALL37404246dc093b/dggridR/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgAddressBase.cpp -o DgAddressBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgApSeq.cpp -o DgApSeq.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBase.cpp -o DgBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedHexC2RF2D.cpp -o DgBoundedHexC2RF2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedHexC3C2RF2D.cpp -o DgBoundedHexC3C2RF2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedHexC3RF2D.cpp -o DgBoundedHexC3RF2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedIDGG.cpp -o DgBoundedIDGG.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedIDGGS.cpp -o DgBoundedIDGGS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedRF2D.cpp -o DgBoundedRF2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedRFBase0.cpp -o DgBoundedRFBase0.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgBoundedRFS2D.cpp -o DgBoundedRFS2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgCell.cpp -o DgCell.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgColor.cpp -o DgColor.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgConverterBase.cpp -o DgConverterBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDVec2D.cpp -o DgDVec2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDVec3D.cpp -o DgDVec3D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDiscRFS2D.cpp -o DgDiscRFS2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDistanceBase.cpp -o DgDistanceBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDmdD4Grid2D.cpp -o DgDmdD4Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDmdD4Grid2DS.cpp -o DgDmdD4Grid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDmdD8Grid2D.cpp -o DgDmdD8Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDmdD8Grid2DS.cpp -o DgDmdD8Grid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgDmdIDGG.cpp -o DgDmdIDGG.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgEllipsoidRF.cpp -o DgEllipsoidRF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgGeoSphRF.cpp -o DgGeoSphRF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgGridTopo.cpp -o DgGridTopo.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexC1Grid2D.cpp -o DgHexC1Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexC2Grid2D.cpp -o DgHexC2Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexC3Grid2D.cpp -o DgHexC3Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexGrid2DS.cpp -o DgHexGrid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexIDGG.cpp -o DgHexIDGG.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgHexIDGGS.cpp -o DgHexIDGGS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGG.cpp -o DgIDGG.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGBase.cpp -o DgIDGGBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS.cpp -o DgIDGGS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS3H.cpp -o DgIDGGS3H.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS43H.cpp -o DgIDGGS43H.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS4D.cpp -o DgIDGGS4D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS4H.cpp -o DgIDGGS4H.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGS4T.cpp -o DgIDGGS4T.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGSBase.cpp -o DgIDGGSBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIDGGutil.cpp -o DgIDGGutil.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIVec2D.cpp -o DgIVec2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIVec3D.cpp -o DgIVec3D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgIcosaMap.cpp -o DgIcosaMap.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInAIGenFile.cpp -o DgInAIGenFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInGDALFile.cpp -o DgInGDALFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInLocTextFile.cpp -o DgInLocTextFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInShapefile.cpp -o DgInShapefile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInShapefileAtt.cpp -o DgInShapefileAtt.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgInputStream.cpp -o DgInputStream.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgLocBase.cpp -o DgLocBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgLocList.cpp -o DgLocList.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgLocVector.cpp -o DgLocVector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgLocation.cpp -o DgLocation.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutAIGenFile.cpp -o DgOutAIGenFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutChildrenFile.cpp -o DgOutChildrenFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutGdalFile.cpp -o DgOutGdalFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutGeoJSONFile.cpp -o DgOutGeoJSONFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutKMLfile.cpp -o DgOutKMLfile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutLocFile.cpp -o DgOutLocFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutLocTextFile.cpp -o DgOutLocTextFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutNeighborsFile.cpp -o DgOutNeighborsFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutPRCellsFile.cpp -o DgOutPRCellsFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutPRPtsFile.cpp -o DgOutPRPtsFile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutPtsText.cpp -o DgOutPtsText.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutRandPtsText.cpp -o DgOutRandPtsText.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutShapefile.cpp -o DgOutShapefile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgOutputStream.cpp -o DgOutputStream.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgParamList.cpp -o DgParamList.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgPolygon.cpp -o DgPolygon.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgProjFuller.cpp -o DgProjFuller.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgProjGnomonicRF.cpp -o DgProjGnomonicRF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgProjISEA.cpp -o DgProjISEA.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgProjTriRF.cpp -o DgProjTriRF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgRFBase.cpp -o DgRFBase.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgRFNetwork.cpp -o DgRFNetwork.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgRandom.cpp -o DgRandom.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSeriesConverter.cpp -o DgSeriesConverter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSqrD4Grid2D.cpp -o DgSqrD4Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSqrD4Grid2DS.cpp -o DgSqrD4Grid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSqrD8Grid2D.cpp -o DgSqrD8Grid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSqrD8Grid2DS.cpp -o DgSqrD8Grid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgSuperfund.cpp -o DgSuperfund.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgTriGrid2D.cpp -o DgTriGrid2D.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgTriGrid2DS.cpp -o DgTriGrid2DS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgTriIDGG.cpp -o DgTriIDGG.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DgUtil.cpp -o DgUtil.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rwrapper.cpp -o Rwrapper.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c adjlon.cpp -o adjlon.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dbfopen.c -o dbfopen.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dglib.cpp -o dglib.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_auth.cpp -o pj_auth.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_mlfn.cpp -o pj_mlfn.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_msfn.cpp -o pj_msfn.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_phi2.cpp -o pj_phi2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_qsfn.cpp -o pj_qsfn.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pj_tsfn.cpp -o pj_tsfn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c safileio.c -o safileio.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sbnsearch.c -o sbnsearch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shpopen.c -o shpopen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shptree.c -o shptree.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shputils.c -o shputils.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test.cpp -o test.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dggridR.so DgAddressBase.o DgApSeq.o DgBase.o DgBoundedHexC2RF2D.o DgBoundedHexC3C2RF2D.o DgBoundedHexC3RF2D.o DgBoundedIDGG.o DgBoundedIDGGS.o DgBoundedRF2D.o DgBoundedRFBase0.o DgBoundedRFS2D.o DgCell.o DgColor.o DgConverterBase.o DgDVec2D.o DgDVec3D.o DgDiscRFS2D.o DgDistanceBase.o DgDmdD4Grid2D.o DgDmdD4Grid2DS.o DgDmdD8Grid2D.o DgDmdD8Grid2DS.o DgDmdIDGG.o DgEllipsoidRF.o DgGeoSphRF.o DgGridTopo.o DgHexC1Grid2D.o DgHexC2Grid2D.o DgHexC3Grid2D.o DgHexGrid2DS.o DgHexIDGG.o DgHexIDGGS.o DgIDGG.o DgIDGGBase.o DgIDGGS.o DgIDGGS3H.o DgIDGGS43H.o DgIDGGS4D.o DgIDGGS4H.o DgIDGGS4T.o DgIDGGSBase.o DgIDGGutil.o DgIVec2D.o DgIVec3D.o DgIcosaMap.o DgInAIGenFile.o DgInGDALFile.o DgInLocTextFile.o DgInShapefile.o DgInShapefileAtt.o DgInputStream.o DgLocBase.o DgLocList.o DgLocVector.o DgLocation.o DgOutAIGenFile.o DgOutChildrenFile.o DgOutGdalFile.o DgOutGeoJSONFile.o DgOutKMLfile.o DgOutLocFile.o DgOutLocTextFile.o DgOutNeighborsFile.o DgOutPRCellsFile.o DgOutPRPtsFile.o DgOutPtsText.o DgOutRandPtsText.o DgOutShapefile.o DgOutputStream.o DgParamList.o DgPolygon.o DgProjFuller.o DgProjGnomonicRF.o DgProjISEA.o DgProjTriRF.o DgRFBase.o DgRFNetwork.o DgRandom.o DgSeriesConverter.o DgSqrD4Grid2D.o DgSqrD4Grid2DS.o DgSqrD8Grid2D.o DgSqrD8Grid2DS.o DgSuperfund.o DgTriGrid2D.o DgTriGrid2DS.o DgTriIDGG.o DgUtil.o RcppExports.o Rwrapper.o adjlon.o dbfopen.o dglib.o pj_auth.o pj_mlfn.o pj_msfn.o pj_phi2.o pj_qsfn.o pj_tsfn.o safileio.o sbnsearch.o shpopen.o shptree.o shputils.o test.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr0YYBY/R.INSTALL37404246dc093b/dggridR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dggridR/00new/dggridR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dggridR) * installing *source* package ‘otelsdk’ ... ** this is package ‘otelsdk’ version ‘0.2.2’ ** package ‘otelsdk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src' rm -f otelcpplib tar xzf vendor/opentelemetry-cpp.tgz --no-same-owner || \ tar xzf vendor/opentelemetry-cpp.tgz mkdir -p cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1 cp status.proto \ cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/ patch -p0 < vendor/opentelemetry-cpp.patch patching file cpp/exporters/otlp/src/otlp_file_client.cc Hunk #1 succeeded at 1256 (offset 3 lines). patching file cpp/third_party/opentelemetry-proto/Makefile patching file cpp/cmake/opentelemetry-proto.cmake Hunk #1 succeeded at 67 (offset -23 lines). Hunk #2 succeeded at 107 (offset -23 lines). Hunk #3 succeeded at 131 (offset -23 lines). Hunk #4 succeeded at 252 (offset -4 lines). Hunk #5 succeeded at 288 (offset -4 lines). Hunk #6 succeeded at 301 (offset -4 lines). Hunk #7 succeeded at 326 (offset -3 lines). patching file cpp/sdk/src/metrics/meter_context.cc Hunk #1 succeeded at 157 (offset 3 lines). Hunk #2 succeeded at 173 (offset 3 lines). patching file cpp/sdk/include/opentelemetry/sdk/metrics/meter_context.h patching file cpp/sdk/src/metrics/meter_provider.cc Hunk #1 succeeded at 163 (offset 4 lines). patching file cpp/exporters/otlp/src/otlp_file_client.cc patching file cpp/api/include/opentelemetry/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/multi_recordable.h patching file cpp/sdk/include/opentelemetry/sdk/trace/recordable.h patching file cpp/sdk/src/trace/span.cc patching file cpp/api/include/opentelemetry/trace/default_span.h patching file cpp/api/include/opentelemetry/trace/noop.h patching file cpp/sdk/src/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/span_data.h patching file cpp/exporters/otlp/include/opentelemetry/exporters/otlp/otlp_recordable.h patching file cpp/exporters/otlp/src/otlp_recordable.cc patching file cpp/api/include/opentelemetry/context/runtime_context.h patching file cpp/sdk/include/opentelemetry/sdk/common/circular_buffer.h (cd cpp; MAKEFLAGS= CC="gcc-15" CXX="g++-15 -std=gnu++20" AR="ar" \ RANLIB="ranlib" CPPFLAGS="-I/usr/local/include" \ CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG " \ CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNDEBUG " \ ""/usr/bin/cmake"" -S . -B build \ -DWITH_ABI_VERSION_1=OFF -DWITH_ABI_VERSION_2=ON \ -DCMAKE_INSTALL_PREFIX=../install -DCMAKE_INSTALL_LIBDIR=lib \ -DCMAKE_PREFIX_PATH="" \ -DCMAKE_POSITION_INDEPENDENT_CODE=ON \ -DBUILD_SHARED_LIBS=OFF -DCMAKE_CXX_STANDARD=14 \ -DWITH_ELASTICSEARCH=OFF -DWITH_EXAMPLES=OFF \ -DWITH_OTLP_GRPC=OFF -DWITH_OTLP_HTTP=ON -DWITH_OTLP_FILE=ON \ -DWITH_ABSEIL=OFF -DWITH_PROMETHEUS=OFF -DBUILD_TESTING=OFF \ -DWITH_BENCHMARK=OFF -DWITH_FUNC_TESTS=OFF -DWITH_ETW=OFF) CMake Deprecation Warning at CMakeLists.txt:25 (cmake_policy): The OLD behavior for policy CMP0092 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- OPENTELEMETRY_ABI_VERSION_NO=2 -- OPENTELEMETRY_VERSION=1.22.0 -- Performing Test check_cxx_compiler_flag_-Wno-type-limits -- Performing Test check_cxx_compiler_flag_-Wno-type-limits - Success -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations - Success -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Protobuf (missing: Protobuf_DIR) -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") -- PROTOBUF_PROTOC_EXECUTABLE=/usr/bin/protoc -- fetching opentelemetry-proto from git submodule -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.18.0") -- Using the single-header code from /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/nlohmann-json/single_include/ -- --------------------------------------------- -- build settings -- --------------------------------------------- -- OpenTelemetry: 1.22.0 -- OpenTelemetry ABI: 2 -- CMAKE_SYSTEM_PROCESSOR: x86_64 -- CXX: GNU 15.2.0 -- CMAKE_BUILD_TYPE: -- CXXFLAGS: -g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG -- CMAKE_CXX_STANDARD: 14 -- CMAKE_TOOLCHAIN_FILE: -- BUILD_SHARED_LIBS: OFF -- --------------------------------------------- -- opentelemetry-cpp build options -- --------------------------------------------- -- WITH_API_ONLY: OFF -- WITH_NO_DEPRECATED_CODE: OFF -- WITH_ABI_VERSION_1: OFF -- WITH_ABI_VERSION_2: ON -- OTELCPP_VERSIONED_LIBS: OFF -- OTELCPP_MAINTAINER_MODE: OFF -- WITH_STL: OFF -- WITH_GSL: OFF -- WITH_NO_GETENV: OFF -- --------------------------------------------- -- opentelemetry-cpp cmake component options -- --------------------------------------------- -- WITH_OTLP_GRPC: OFF -- WITH_OTLP_HTTP: ON -- WITH_OTLP_FILE: ON -- WITH_HTTP_CLIENT_CURL: ON -- WITH_ZIPKIN: OFF -- WITH_PROMETHEUS: OFF -- WITH_ELASTICSEARCH: OFF -- WITH_OPENTRACING: OFF -- WITH_ETW: OFF -- OPENTELEMETRY_BUILD_DLL: -- --------------------------------------------- -- feature preview options -- --------------------------------------------- -- WITH_ASYNC_EXPORT_PREVIEW: OFF -- WITH_THREAD_INSTRUMENTATION_PREVIEW: OFF -- WITH_METRICS_EXEMPLAR_PREVIEW: OFF -- WITH_OTLP_GRPC_SSL_MTLS_PREVIEW: OFF -- WITH_OTLP_GRPC_CREDENTIAL_PREVIEW: OFF -- WITH_OTLP_RETRY_PREVIEW: OFF -- --------------------------------------------- -- third-party options -- --------------------------------------------- -- WITH_NLOHMANN_JSON: ON -- WITH_CURL_LOGGING: OFF -- WITH_OTLP_HTTP_COMPRESSION: OFF -- --------------------------------------------- -- examples and test options -- --------------------------------------------- -- WITH_BENCHMARK: OFF -- WITH_EXAMPLES: OFF -- WITH_EXAMPLES_HTTP: OFF -- WITH_FUNC_TESTS: OFF -- BUILD_W3CTRACECONTEXT_TEST: OFF -- BUILD_TESTING: OFF -- --------------------------------------------- -- versions -- --------------------------------------------- -- CMake: 4.2.3 -- GTest: () -- benchmark: () -- Protobuf: 3.21.12 -- CURL: 8.18.0 -- nlohmann-json: (fetch_source) -- --------------------------------------------- -- Building WITH_STL=OFF -- Installing components: -- Install COMPONENT api -- TARGETS: opentelemetry_api -- TARGETS_ALIAS: opentelemetry-cpp::api -- COMPONENT_DEPENDS: -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/api/include/opentelemetry -- FILES_DESTINATION: include -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT sdk -- TARGETS: opentelemetry_sdk;opentelemetry_common;opentelemetry_resources;opentelemetry_version;opentelemetry_logs;opentelemetry_trace;opentelemetry_metrics -- TARGETS_ALIAS: opentelemetry-cpp::sdk;opentelemetry-cpp::common;opentelemetry-cpp::resources;opentelemetry-cpp::version;opentelemetry-cpp::logs;opentelemetry-cpp::trace;opentelemetry-cpp::metrics -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: Threads -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/sdk/include/opentelemetry/ -- FILES_DESTINATION: include/opentelemetry -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_common -- TARGETS: opentelemetry_ext -- TARGETS_ALIAS: opentelemetry-cpp::ext -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/ext/include/opentelemetry/ext -- FILES_DESTINATION: include/opentelemetry/ -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_http_curl -- TARGETS: opentelemetry_http_client_curl -- TARGETS_ALIAS: opentelemetry-cpp::http_client_curl -- COMPONENT_DEPENDS: api;sdk;ext_common -- THIRDPARTY_DEPENDS: CURL -- FILES_DIRECTORY: -- FILES_DESTINATION: -- FILES_MATCHING: -- Install COMPONENT exporters_otlp_common -- TARGETS: opentelemetry_otlp_recordable;opentelemetry_proto -- TARGETS_ALIAS: opentelemetry-cpp::otlp_recordable;opentelemetry-cpp::proto -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: Protobuf -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h;PATTERN;otlp_http*.h;EXCLUDE;PATTERN;otlp_grpc*.h;EXCLUDE;PATTERN;otlp_file*.h;EXCLUDE -- Install COMPONENT exporters_otlp_http -- TARGETS: opentelemetry_exporter_otlp_http_client;opentelemetry_exporter_otlp_http;opentelemetry_exporter_otlp_http_log;opentelemetry_exporter_otlp_http_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_http_client;opentelemetry-cpp::otlp_http_exporter;opentelemetry-cpp::otlp_http_log_record_exporter;opentelemetry-cpp::otlp_http_metric_exporter -- COMPONENT_DEPENDS: api;sdk;ext_common;exporters_otlp_common;ext_http_curl -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_http*.h -- Install COMPONENT exporters_otlp_file -- TARGETS: opentelemetry_exporter_otlp_file_client;opentelemetry_exporter_otlp_file;opentelemetry_exporter_otlp_file_log;opentelemetry_exporter_otlp_file_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_file_client;opentelemetry-cpp::otlp_file_exporter;opentelemetry-cpp::otlp_file_log_record_exporter;opentelemetry-cpp::otlp_file_metric_exporter -- COMPONENT_DEPENDS: api;sdk;exporters_otlp_common -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_file*.h -- Install COMPONENT exporters_ostream -- TARGETS: opentelemetry_exporter_ostream_span;opentelemetry_exporter_ostream_metrics;opentelemetry_exporter_ostream_logs -- TARGETS_ALIAS: opentelemetry-cpp::ostream_span_exporter;opentelemetry-cpp::ostream_metrics_exporter;opentelemetry-cpp::ostream_log_record_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/exporters/ostream/include/opentelemetry/exporters/ostream -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT exporters_in_memory -- TARGETS: opentelemetry_exporter_in_memory;opentelemetry_exporter_in_memory_metric -- TARGETS_ALIAS: opentelemetry-cpp::in_memory_span_exporter;opentelemetry-cpp::in_memory_metric_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/exporters/memory/include/opentelemetry/exporters/memory -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Configuring done (2.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: WITH_ABSEIL -- Build files have been written to: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/build (cd cpp; ""/usr/bin/cmake"" --build build 2>&1) | cat gmake[2]: Entering directory '/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/build' [ 0%] [Run]: "/usr/bin/protoc" "--proto_path=/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto" "--cpp_out=/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/build/generated/third_party/opentelemetry-proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/profiles/v1development/profiles.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/profiles/v1development/profiles_service.proto" "/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.proto" [ 1%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.pb.cc.o [ 3%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.pb.cc.o [ 5%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.pb.cc.o [ 7%] Linking CXX static library libopentelemetry_proto.a [ 7%] Built target opentelemetry_proto [ 7%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/random.cc.o [ 8%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/global_log_handler.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/env_variables.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/base64.cc.o [ 10%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/disabled.cc.o [ 11%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/platform/fork_unix.cc.o [ 11%] Linking CXX static library libopentelemetry_common.a [ 11%] Built target opentelemetry_common [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource.cc.o [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource_detector.cc.o [ 13%] Linking CXX static library libopentelemetry_resources.a [ 13%] Built target opentelemetry_resources [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context.cc.o [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context_factory.cc.o [ 15%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider_factory.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer.cc.o [ 17%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/span.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/exporter.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/provider.cc.o [ 19%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor_factory.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/simple_processor_factory.cc.o [ 21%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_on_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_off_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent.cc.o [ 23%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent_factory.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio_factory.cc.o [ 25%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator_factory.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_config.cc.o [ 27%] Linking CXX static library libopentelemetry_trace.a [ 27%] Built target 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sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_aggregation.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_indexer.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/histogram_aggregation.cc.o [ 41%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/lastvalue_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/sum_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/data/circular_buffer.cc.o [ 43%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/exemplar/reservoir.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/instrument_selector_factory.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/meter_selector_factory.cc.o [ 45%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_registry_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/sync_instruments.cc.o [ 47%] Linking CXX static library libopentelemetry_metrics.a [ 47%] Built target opentelemetry_metrics [ 47%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/provider.cc.o [ 48%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider_factory.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger.cc.o [ 50%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/exporter.cc.o [ 51%] Building CXX object 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sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_context_factory.cc.o [ 57%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor.cc.o [ 58%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor_factory.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_recordable.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/read_write_log_record.cc.o [ 60%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/readable_log_record.cc.o [ 61%] Linking CXX static library libopentelemetry_logs.a [ 61%] Built target opentelemetry_logs [ 62%] Building CXX object sdk/src/version/CMakeFiles/opentelemetry_version.dir/version.cc.o [ 63%] Linking CXX static library libopentelemetry_version.a [ 63%] Built target opentelemetry_version [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_factory_curl.cc.o [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_curl.cc.o [ 65%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_operation_curl.cc.o [ 66%] Linking CXX static library libopentelemetry_http_client_curl.a [ 66%] Built target opentelemetry_http_client_curl [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_environment.cc.o [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_log_recordable.cc.o [ 68%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_populate_attribute_utils.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable_utils.cc.o [ 70%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_metric_utils.cc.o [ 71%] Linking CXX static library libopentelemetry_otlp_recordable.a [ 71%] Built target opentelemetry_otlp_recordable [ 71%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http.cc.o [ 72%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http_client.cc.o [ 73%] Linking CXX static library libopentelemetry_exporter_otlp_http_client.a [ 73%] Built target opentelemetry_exporter_otlp_http_client [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter.cc.o [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_factory.cc.o [ 75%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_options.cc.o [ 76%] Linking CXX static library libopentelemetry_exporter_otlp_http.a [ 76%] Built target opentelemetry_exporter_otlp_http [ 76%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter.cc.o [ 77%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_factory.cc.o [ 78%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_options.cc.o [ 78%] Linking CXX static library libopentelemetry_exporter_otlp_http_log.a [ 78%] Built target opentelemetry_exporter_otlp_http_log [ 79%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_factory.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_options.cc.o [ 81%] Linking CXX static library libopentelemetry_exporter_otlp_http_metric.a [ 81%] Built target opentelemetry_exporter_otlp_http_metric [ 82%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_client.dir/src/otlp_file_client.cc.o [ 83%] Linking CXX static library libopentelemetry_exporter_otlp_file_client.a [ 83%] Built target opentelemetry_exporter_otlp_file_client [ 83%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter.cc.o [ 84%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_factory.cc.o [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_options.cc.o [ 85%] Linking CXX static library libopentelemetry_exporter_otlp_file.a [ 85%] Built target opentelemetry_exporter_otlp_file [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter.cc.o [ 86%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_factory.cc.o [ 87%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_options.cc.o [ 87%] Linking CXX static library libopentelemetry_exporter_otlp_file_log.a [ 87%] Built target opentelemetry_exporter_otlp_file_log [ 88%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_factory.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_options.cc.o [ 90%] Linking CXX static library libopentelemetry_exporter_otlp_file_metric.a [ 90%] Built target opentelemetry_exporter_otlp_file_metric [ 90%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter.cc.o [ 91%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter_factory.cc.o [ 92%] Linking CXX static library libopentelemetry_exporter_ostream_span.a [ 92%] Built target opentelemetry_exporter_ostream_span [ 92%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter.cc.o [ 93%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter_factory.cc.o [ 94%] Linking CXX static library libopentelemetry_exporter_ostream_metrics.a [ 94%] Built target opentelemetry_exporter_ostream_metrics [ 94%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter.cc.o [ 95%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter_factory.cc.o [ 96%] Linking CXX static library libopentelemetry_exporter_ostream_logs.a [ 96%] Built target opentelemetry_exporter_ostream_logs [ 97%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory.dir/src/in_memory_span_exporter_factory.cc.o [ 98%] Linking CXX static library libopentelemetry_exporter_in_memory.a [ 98%] Built target opentelemetry_exporter_in_memory [ 98%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_exporter_factory.cc.o [ 99%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_data.cc.o [100%] Linking CXX static library libopentelemetry_exporter_in_memory_metric.a [100%] Built target opentelemetry_exporter_in_memory_metric gmake[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/cpp/build' (cd cpp; ""/usr/bin/cmake"" --install build) -- Install configuration: "" -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/common -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/common/v1 -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/common/v1/common.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/profiles -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/profiles/v1development -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/profiles/v1development/profiles.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/trace -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/trace/v1 -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/trace/v1/trace.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector/common -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector/common/v1 -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector/common/v1/status.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector/profiles -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/collector/profiles/v1development -- 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-- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/logs -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/logs/v1 -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/logs/v1/logs.pb.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/resource -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/resource/v1 -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/proto/resource/v1/resource.pb.h -- Up-to-date: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include -- Installing: 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/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/share/cmake/nlohmann_json/nlohmann_jsonConfigVersion.cmake -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/share/cmake/nlohmann_json/nlohmann_jsonTargets.cmake -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/share/pkgconfig/nlohmann_json.pc -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/pkgconfig/opentelemetry_api.pc -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/pkgconfig/opentelemetry_common.pc -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/pkgconfig/opentelemetry_trace.pc -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/pkgconfig/opentelemetry_metrics.pc -- Installing: 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/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/common/._key_value_iterable.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/common/._timestamp.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/common/attribute_value.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/common/kv_properties.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/common/._key_value_iterable_view.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/tracer_provider.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/._tracer_provider.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/._provider.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/default_span.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/provider.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/._noop.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/span_context_kv_iterable.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/trace/._span_context.h -- Installing: 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/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_data.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/cmake/opentelemetry-cpp/component-definitions.cmake -- Installing: /home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src/install/lib/cmake/opentelemetry-cpp/thirdparty-dependency-definitions.cmake touch otelcpplib gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap-r.c -o wrap-r.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrap-c.cc -o wrap-c.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glue.c -o glue.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c span.c -o span.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c context.c -o context.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tracer.c -o tracer.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-sdk.cc -o tracer-sdk.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-api.cc -o tracer-api.o tracer-api.cc: In function ‘void otel_span_set_status_(void*, int, char*)’: tracer-api.cc:300:19: warning: ‘status_code’ may be used uninitialized [-Wmaybe-uninitialized] 300 | span.SetStatus(status_code); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ tracer-api.cc:289:21: note: ‘status_code’ was declared here 289 | trace::StatusCode status_code; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c meter.c -o meter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c meter-sdk.cc -o meter-sdk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logger.c -o logger.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logger-sdk.cc -o logger-sdk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-collector.c -o r-collector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collector.cc -o collector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stdstream.cc -o stdstream.o ar rs libstdstream-exporter.a stdstream.o ar: creating libstdstream-exporter.a g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o otelsdk.so init.o cleancall.o wrap-r.o wrap-c.o glue.o utils.o errors.o span.o context.o tracer.o tracer-sdk.o tracer-api.o meter.o meter-sdk.o logger.o logger-sdk.o r-collector.o collector.o -Linstall/lib libstdstream-exporter.a -lopentelemetry_exporter_ostream_span -lopentelemetry_exporter_otlp_http -lopentelemetry_exporter_otlp_http_client -lopentelemetry_exporter_ostream_logs -lopentelemetry_exporter_otlp_http_log -lopentelemetry_exporter_otlp_http_metric -lopentelemetry_exporter_ostream_metrics -lopentelemetry_exporter_otlp_file -lopentelemetry_exporter_otlp_file_log -lopentelemetry_exporter_otlp_file_metric -lopentelemetry_exporter_in_memory -lopentelemetry_exporter_in_memory_metric -lopentelemetry_exporter_otlp_file_client -lopentelemetry_http_client_curl -lopentelemetry_otlp_recordable -lopentelemetry_trace -lopentelemetry_logs -lopentelemetry_metrics -lopentelemetry_resources -lopentelemetry_common -lopentelemetry_proto -lprotobuf -lcurl libstdstream-exporter.a -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfgclFn/R.INSTALL374028368b5017/otelsdk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-otelsdk/00new/otelsdk/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otelsdk) checking mirai_2.6.1.tar.gz ... checking bakerrr_0.2.0.tar.gz ... checking bregr_1.4.0.tar.gz ... checking CBTF_0.6.0.tar.gz ... checking chopin_0.9.9.tar.gz ... checking crew_1.3.0.tar.gz ... checking dRiftDM_0.3.1.tar.gz ... checking flownet_0.2.1.tar.gz ... checking future.mirai_0.10.1.tar.gz ... checking GeomArchetypal_1.0.3.tar.gz ... checking gratia_0.11.2.tar.gz ... checking invivoPKfit_2.0.2.tar.gz ... checking kinesis_0.3.1.tar.gz ... checking mlr3_1.5.0.tar.gz ... checking pliman_3.1.1.tar.gz ... checking ragnar_0.3.0.tar.gz ... checking reqres_1.2.0.tar.gz ... checking rush_0.4.1.tar.gz ... checking slideimp_0.5.4.tar.gz ... checking synthReturn_1.0.0.tar.gz ... checking worldmet_1.0.0.tar.gz ... checking xplainfi_1.1.0.tar.gz ... checking bbotk_1.9.0.tar.gz ... checking brms_2.23.0.tar.gz ... checking evsim_1.7.1.tar.gz ... checking filibustr_0.5.1.tar.gz ... checking important_0.2.1.tar.gz ... checking kuzco_0.1.0.tar.gz ... checking mlr3hyperband_1.0.0.tar.gz ... checking opusreader2_0.6.8.tar.gz ... checking tune_2.0.1.tar.gz ... checking teal_1.1.0.tar.gz ... checking logger_0.4.1.tar.gz ... checking shinyscholar_0.4.4.tar.gz ... checking TrialSimulator_1.10.1.tar.gz ... checking ravepipeline_0.0.3.tar.gz ... checking mlr3mbo_1.0.0.tar.gz ... checking mlr3cluster_0.3.0.tar.gz ... checking plumber2_0.2.0.tar.gz ... checking Tplyr_1.3.2.tar.gz ... checking shinyOAuth_0.4.0.tar.gz ... checking mlr3tuning_1.5.1.tar.gz ... checking mlr3misc_0.21.0.tar.gz ... checking mlr3fselect_1.5.0.tar.gz ... checking shiny_1.13.0.tar.gz ... checking mlr3learners_0.14.0.tar.gz ... checking promises_1.5.0.tar.gz ... checking purrr_1.2.1.tar.gz ... checking routr_2.0.0.tar.gz ... Depends: Package: mirai Depends: R (>= 3.6) Imports: nanonext (>= 1.8.0) Timings: user system elapsed mirai 43.936 5.613 53.447 Results: Check status summary: OK Source packages 1 Reverse depends 48 Check results summary: mirai ... OK rdepends_bakerrr ... OK rdepends_bbotk ... OK rdepends_bregr ... OK rdepends_brms ... OK rdepends_CBTF ... OK rdepends_chopin ... OK rdepends_crew ... OK rdepends_dRiftDM ... OK rdepends_evsim ... OK rdepends_filibustr ... OK rdepends_flownet ... OK rdepends_future.mirai ... OK rdepends_GeomArchetypal ... OK rdepends_gratia ... OK rdepends_important ... OK rdepends_invivoPKfit ... OK rdepends_kinesis ... OK rdepends_kuzco ... OK rdepends_logger ... OK rdepends_mlr3 ... OK rdepends_mlr3cluster ... OK rdepends_mlr3fselect ... OK rdepends_mlr3hyperband ... OK rdepends_mlr3learners ... OK rdepends_mlr3mbo ... OK rdepends_mlr3misc ... OK rdepends_mlr3tuning ... OK rdepends_opusreader2 ... OK rdepends_pliman ... OK rdepends_plumber2 ... OK rdepends_promises ... OK rdepends_purrr ... OK rdepends_ragnar ... OK rdepends_ravepipeline ... OK rdepends_reqres ... OK rdepends_routr ... OK rdepends_rush ... OK rdepends_shiny ... OK rdepends_shinyOAuth ... OK rdepends_shinyscholar ... OK rdepends_slideimp ... OK rdepends_synthReturn ... OK rdepends_teal ... OK rdepends_Tplyr ... OK rdepends_TrialSimulator ... OK rdepends_tune ... OK rdepends_worldmet ... OK rdepends_xplainfi ... OK Check results changes: Package: mlr3cluster [Old version: 0.2.0, New version: 0.3.0] Check: tests Old result: ERROR New result: OK