downloading reverse dependencies ... downloading bregr_1.2.0.tar.gz ... ok downloading chopin_0.9.4.tar.gz ... ok downloading crew_1.2.1.tar.gz ... ok downloading future.mirai_0.10.1.tar.gz ... ok downloading GeomArchetypal_1.0.3.tar.gz ... ok downloading gratia_0.11.1.tar.gz ... ok downloading ichimoku_1.5.6.tar.gz ... ok downloading invivoPKfit_2.0.2.tar.gz ... ok downloading kinesis_0.2.1.tar.gz ... ok downloading pliman_3.1.1.tar.gz ... ok downloading reqres_1.0.0.tar.gz ... ok downloading rush_0.3.0.tar.gz ... ok downloading bbotk_1.6.0.tar.gz ... ok downloading important_0.0.1.tar.gz ... ok downloading logger_0.4.0.tar.gz ... ok downloading mlr3fselect_1.4.0.tar.gz ... ok downloading mlr3hyperband_1.0.0.tar.gz ... ok downloading mlr3mbo_0.3.1.tar.gz ... ok downloading mlr3misc_0.18.0.tar.gz ... ok downloading mlr3tuning_1.4.0.tar.gz ... ok downloading purrr_1.1.0.tar.gz ... ok downloading routr_1.0.0.tar.gz ... ok downloading shiny_1.11.1.tar.gz ... ok downloading shinyscholar_0.4.2.tar.gz ... ok downloading teal_1.0.0.tar.gz ... ok downloading tune_2.0.0.tar.gz ... ok downloading worldmet_0.10.1.tar.gz ... ok installing dependencies ‘adagio’, ‘aion’, ‘anticlust’, ‘archetypal’, ‘arkhe’, ‘autometric’, ‘botor’, ‘brotli’, ‘carrier’, ‘censored’, ‘dimensio’, ‘distances’, ‘fastVoteR’, ‘fiery’, ‘folio’, ‘forestploter’, ‘future.mirai’, ‘future.tests’, ‘gamair’, ‘gargoyle’, ‘ggalign’, ‘ggokabeito’, ‘ggstatsplot’, ‘GJRM’, ‘httk’, ‘irace’, ‘isopleuros’, ‘kairos’, ‘knitcitations’, ‘mapedit’, ‘merDeriv’, ‘mirai’, ‘mlflow’, ‘MultiAssayExperiment’, ‘nexus’, ‘otel’, ‘PK’, ‘probably’, ‘rapidoc’, ‘reactlog’, ‘redoc’, ‘redux’, ‘reqres’, ‘roxy.shinylive’, ‘RPushbullet’, ‘rsyslog’, ‘rush’, ‘shinyvalidate’, ‘slackr’, ‘stabm’, ‘syslognet’, ‘tabula’, ‘teal.code’, ‘teal.data’, ‘teal.logger’, ‘teal.reporter’, ‘teal.slice’, ‘teal.widgets’, ‘telegram’, ‘UCSCXenaShiny’, ‘visreg’, ‘watcher’ also installing the dependencies ‘forestmodel’, ‘ggside’, ‘statsExpressions’, ‘ezcox’, ‘UCSCXenaTools’, ‘inflection’, ‘leafpm’, ‘rlistings’, ‘rtables.officer’, ‘BiocBaseUtils’, ‘lzstring’ begin installing package ‘forestmodel’ begin installing package ‘ggside’ begin installing package ‘statsExpressions’ begin installing package ‘UCSCXenaTools’ begin installing package ‘inflection’ begin installing package ‘leafpm’ begin installing package ‘rlistings’ begin installing package ‘BiocBaseUtils’ begin installing package ‘lzstring’ begin installing package ‘otel’ begin installing package ‘forestploter’ begin installing package ‘ggalign’ begin installing package ‘merDeriv’ begin installing package ‘visreg’ begin installing package ‘anticlust’ begin installing package ‘autometric’ begin installing package ‘future.tests’ begin installing package ‘distances’ begin installing package ‘ggokabeito’ begin installing package ‘GJRM’ begin installing package ‘gamair’ begin installing package ‘carrier’ begin installing package ‘httk’ begin installing package ‘PK’ begin installing package ‘arkhe’ begin installing package ‘folio’ begin installing package ‘isopleuros’ begin installing package ‘brotli’ * installing *source* package ‘gamair’ ... ** this is package ‘gamair’ version ‘1.0-2’ ** package ‘gamair’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamair) begin installing package ‘redux’ * installing *source* package ‘inflection’ ... ** this is package ‘inflection’ version ‘1.3.7’ ** package ‘inflection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inflection) begin installing package ‘adagio’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.10.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘irace’ * installing *source* package ‘leafpm’ ... ** this is package ‘leafpm’ version ‘0.1.0’ ** package ‘leafpm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leafpm) begin installing package ‘censored’ * installing *source* package ‘ggokabeito’ ... ** this is package ‘ggokabeito’ version ‘0.1.0’ ** package ‘ggokabeito’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggokabeito) begin installing package ‘botor’ * installing *source* package ‘carrier’ ... ** this is package ‘carrier’ version ‘0.2.0’ ** package ‘carrier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carrier) begin installing package ‘RPushbullet’ * installing *source* package ‘folio’ ... ** this is package ‘folio’ version ‘1.5.1’ ** package ‘folio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (folio) begin installing package ‘rsyslog’ * installing *source* package ‘isopleuros’ ... ** this is package ‘isopleuros’ version ‘1.4.0’ ** package ‘isopleuros’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isopleuros) begin installing package ‘slackr’ * installing *source* package ‘autometric’ ... ** this is package ‘autometric’ version ‘0.1.2’ ** package ‘autometric’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPcITQ/R.INSTALL3d02c53ea4073/autometric/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c autometric.c -o autometric.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c export.c -o export.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics.c -o metrics.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_linux.c -o metrics_linux.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_mac.c -o metrics_mac.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_windows.c -o metrics_windows.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c timers.c -o timers.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o autometric.so autometric.o export.o metrics.o metrics_linux.o metrics_mac.o metrics_windows.o thread.o timers.o -lpthread -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPcITQ/R.INSTALL3d02c53ea4073/autometric/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-autometric/00new/autometric/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autometric) begin installing package ‘syslognet’ * installing *source* package ‘otel’ ... ** this is package ‘otel’ version ‘0.2.0’ ** package ‘otel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otel) begin installing package ‘telegram’ * installing *source* package ‘visreg’ ... ** this is package ‘visreg’ version ‘2.8.0’ ** package ‘visreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visreg) begin installing package ‘stabm’ * installing *source* package ‘arkhe’ ... ** this is package ‘arkhe’ version ‘1.11.0’ ** package ‘arkhe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arkhe) begin installing package ‘fastVoteR’ * installing *source* package ‘forestploter’ ... ** this is package ‘forestploter’ version ‘1.1.3’ ** package ‘forestploter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestploter) begin installing package ‘mlflow’ * installing *source* package ‘RPushbullet’ ... ** this is package ‘RPushbullet’ version ‘0.3.4’ ** package ‘RPushbullet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPushbullet) begin installing package ‘redoc’ * installing *source* package ‘rsyslog’ ... ** this is package ‘rsyslog’ version ‘1.0.3’ ** package ‘rsyslog’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7zoa9s/R.INSTALL3d5004f66db97/rsyslog/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rsyslog.c -o rsyslog.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rsyslog.so rsyslog.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7zoa9s/R.INSTALL3d5004f66db97/rsyslog/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rsyslog/00new/rsyslog/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsyslog) begin installing package ‘rapidoc’ * installing *source* package ‘syslognet’ ... ** this is package ‘syslognet’ version ‘0.1.2.1’ ** package ‘syslognet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (syslognet) begin installing package ‘reactlog’ * installing *source* package ‘adagio’ ... ** this is package ‘adagio’ version ‘0.9.2’ ** package ‘adagio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adagio) begin installing package ‘watcher’ * installing *source* package ‘PK’ ... ** this is package ‘PK’ version ‘1.3-6’ ** package ‘PK’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PK) begin installing package ‘gargoyle’ * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.12’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) begin installing package ‘knitcitations’ * installing *source* package ‘forestmodel’ ... ** this is package ‘forestmodel’ version ‘0.6.2’ ** package ‘forestmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestmodel) begin installing package ‘teal.code’ * installing *source* package ‘statsExpressions’ ... ** this is package ‘statsExpressions’ version ‘1.7.1’ ** package ‘statsExpressions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statsExpressions) begin installing package ‘teal.logger’ * installing *source* package ‘redoc’ ... ** this is package ‘redoc’ version ‘2.0.0.75’ ** package ‘redoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redoc) begin installing package ‘teal.widgets’ * installing *source* package ‘rapidoc’ ... ** this is package ‘rapidoc’ version ‘9.3.4’ ** package ‘rapidoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapidoc) begin installing package ‘shinyvalidate’ * installing *source* package ‘reactlog’ ... ** this is package ‘reactlog’ version ‘1.1.1’ ** package ‘reactlog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactlog) begin installing package ‘probably’ * installing *source* package ‘future.tests’ ... ** this is package ‘future.tests’ version ‘0.9.0’ ** package ‘future.tests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.tests) begin installing package ‘mirai’ * installing *source* package ‘UCSCXenaTools’ ... ** this is package ‘UCSCXenaTools’ version ‘1.6.1’ ** package ‘UCSCXenaTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSCXenaTools) begin installing package ‘ezcox’ * installing *source* package ‘telegram’ ... ** this is package ‘telegram’ version ‘0.7.1’ ** package ‘telegram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (telegram) begin installing package ‘rtables.officer’ * installing *source* package ‘lzstring’ ... ** this is package ‘lzstring’ version ‘0.2.0’ ** package ‘lzstring’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyJk3p8/R.INSTALL3d0102a182684/lzstring/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o In file included from code.cpp:4: lz-string.h: In function ‘lzstring::string lzstring::decompressFromEncodedURIComponent(const string&)’: lz-string.h:549:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 549 | for (int i = 0; i < keyStrUriSafe.length(); ++i) baseReverseDic[keyStrUriSafe.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ lz-string.h: In function ‘lzstring::string lzstring::decompressFromBase64(const string&)’: lz-string.h:574:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 574 | for (int i = 0; i < keyStrBase64.length(); ++i) baseReverseDic[keyStrBase64.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lzstring.so code.o cpp11.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyJk3p8/R.INSTALL3d0102a182684/lzstring/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lzstring/00new/lzstring/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lzstring) begin installing package ‘archetypal’ * installing *source* package ‘slackr’ ... ** this is package ‘slackr’ version ‘3.3.1’ ** package ‘slackr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slackr) begin installing package ‘aion’ * installing *source* package ‘redux’ ... ** this is package ‘redux’ version ‘1.1.5’ ** package ‘redux’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis Using PKG_LIBS=-lhiredis ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptCcisX/R.INSTALL3d2eb42c3b66c/redux/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection.c -o connection.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c conversions.c -o conversions.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subscribe.c -o subscribe.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o redux.so connection.o conversions.o registration.o subscribe.o -lhiredis -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptCcisX/R.INSTALL3d2eb42c3b66c/redux/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redux/00new/redux/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redux) begin installing package ‘dimensio’ * installing *source* package ‘gargoyle’ ... ** this is package ‘gargoyle’ version ‘0.0.1’ ** package ‘gargoyle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gargoyle) begin installing package ‘tabula’ * installing *source* package ‘merDeriv’ ... ** this is package ‘merDeriv’ version ‘0.2-5’ ** package ‘merDeriv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (merDeriv) begin installing package ‘mapedit’ * installing *source* package ‘shinyvalidate’ ... ** this is package ‘shinyvalidate’ version ‘0.1.3’ ** package ‘shinyvalidate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyvalidate) begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘teal.code’ ... ** this is package ‘teal.code’ version ‘0.7.0’ ** package ‘teal.code’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.code) begin installing package ‘roxy.shinylive’ * installing *source* package ‘teal.logger’ ... ** this is package ‘teal.logger’ version ‘0.4.0’ ** package ‘teal.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.logger) begin installing package ‘teal.data’ * installing *source* package ‘botor’ ... ** this is package ‘botor’ version ‘0.4.1’ ** package ‘botor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (botor) * installing *source* package ‘mirai’ ... ** this is package ‘mirai’ version ‘2.5.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirai) begin installing package ‘future.mirai’ begin installing package ‘rush’ * installing *source* package ‘mlflow’ ... ** this is package ‘mlflow’ version ‘3.2.0’ ** package ‘mlflow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlflow) * installing *source* package ‘teal.widgets’ ... ** this is package ‘teal.widgets’ version ‘0.5.0’ ** package ‘teal.widgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.widgets) * installing *source* package ‘knitcitations’ ... ** this is package ‘knitcitations’ version ‘1.0.12’ ** package ‘knitcitations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitcitations) * installing *source* package ‘stabm’ ... ** this is package ‘stabm’ version ‘1.2.2’ ** package ‘stabm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stabm) * installing *source* package ‘anticlust’ ... ** this is package ‘anticlust’ version ‘0.8.10-1’ ** package ‘anticlust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7Kid4Y/R.INSTALL3d00624e93787/anticlust/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anticlust_init.c -o anticlust_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bicriterion_iterated_local_search_call.c -o bicriterion_iterated_local_search_call.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c categorical-contraints.c -o categorical-contraints.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dispersion_anticlustering.c -o dispersion_anticlustering.o dispersion_anticlustering.c: In function ‘dispersion_anticlustering’: dispersion_anticlustering.c:213:25: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 213 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dispersion_anticlustering.c:137:16: note: ‘best_partner’ was declared here 137 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance-anticlustering.c -o distance-anticlustering.o distance-anticlustering.c: In function ‘distance_anticlustering_’: distance-anticlustering.c:270:33: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 270 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ distance-anticlustering.c:187:16: note: ‘best_partner’ was declared here 187 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fast-kmeans-anticlustering.c -o fast-kmeans-anticlustering.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c free-memory.c -o free-memory.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kmeans-anticlustering.c -o kmeans-anticlustering.o kmeans-anticlustering.c: In function ‘kmeans_anticlustering’: kmeans-anticlustering.c:241:25: warning: ‘best_partner’ may be used uninitialized [-Wmaybe-uninitialized] 241 | swap(n, i, best_partner, PTR_NODES); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmeans-anticlustering.c:177:16: note: ‘best_partner’ was declared here 177 | size_t best_partner; | ^~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc-array-methods.c -o misc-array-methods.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c set-up-data-structures.c -o set-up-data-structures.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c three-phase-dispersion.c -o three-phase-dispersion.o three-phase-dispersion.c: In function ‘SearchAlgorithmDisperion’: three-phase-dispersion.c:443:12: warning: unused variable ‘elapsed_time’ [-Wunused-variable] 443 | double elapsed_time = (double) (end_time - start_time)/CLOCKS_PER_SEC; | ^~~~~~~~~~~~ three-phase-dispersion.c: In function ‘DirectPerturbationDispersion’: three-phase-dispersion.c:651:13: warning: ‘selectedElement’ may be used uninitialized [-Wmaybe-uninitialized] 651 | adding(selectedElement, k, s, min_distance_tuple, min_distance_per_cluster); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ three-phase-dispersion.c:549:30: note: ‘selectedElement’ was declared here 549 | int new_ind, ind1, ind2, selectedElement, minElement; | ^~~~~~~~~~~~~~~ three-phase-dispersion.c:654:15: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 654 | Rd[selectedGroup] = -1; | ^ three-phase-dispersion.c:610:13: note: ‘selectedGroup’ was declared here 610 | int selectedGroup; | ^~~~~~~~~~~~~ three-phase-dispersion.c: In function ‘CrossoverDispersion’: three-phase-dispersion.c:809:20: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 809 | if (s2[j] == selectedGroup) { | ^ three-phase-dispersion.c:698:15: note: ‘selectedGroup’ was declared here 698 | int i, j, selectedGroup; | ^~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c three_phase_search_dynamic_population_size.c -o three_phase_search_dynamic_population_size.o three_phase_search_dynamic_population_size.c: In function ‘DirectPerturbationDiversity’: three_phase_search_dynamic_population_size.c:605:17: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 605 | s[Rd[selectedGroup]] = i; | ^ three_phase_search_dynamic_population_size.c:573:13: note: ‘selectedGroup’ was declared here 573 | int selectedGroup; | ^~~~~~~~~~~~~ three_phase_search_dynamic_population_size.c:627:26: warning: ‘groupWithMaxAvgCon’ may be used uninitialized [-Wmaybe-uninitialized] 627 | if (SizeGroup[groupWithMaxAvgCon] < UB[groupWithMaxAvgCon]) { | ^ three_phase_search_dynamic_population_size.c:612:13: note: ‘groupWithMaxAvgCon’ was declared here 612 | int groupWithMaxAvgCon; | ^~~~~~~~~~~~~~~~~~ three_phase_search_dynamic_population_size.c: In function ‘process_partition’: three_phase_search_dynamic_population_size.c:668:12: warning: ‘selectedGroup’ may be used uninitialized [-Wmaybe-uninitialized] 668 | if (s1[i] == selectedGroup) { | ^ three_phase_search_dynamic_population_size.c:655:12: note: ‘selectedGroup’ was declared here 655 | int i, selectedGroup, processedCount, selectedElement; | ^~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c variance-objective.c -o variance-objective.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o anticlust.so anticlust_init.o bicriterion_iterated_local_search_call.o categorical-contraints.o dispersion_anticlustering.o distance-anticlustering.o fast-kmeans-anticlustering.o free-memory.o kmeans-anticlustering.o misc-array-methods.o set-up-data-structures.o three-phase-dispersion.o three_phase_search_dynamic_population_size.o variance-objective.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7Kid4Y/R.INSTALL3d00624e93787/anticlust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-anticlust/00new/anticlust/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anticlust) * installing *source* package ‘ggside’ ... ** this is package ‘ggside’ version ‘0.3.2’ ** package ‘ggside’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggside) begin installing package ‘ggstatsplot’ * installing *source* package ‘future.mirai’ ... ** this is package ‘future.mirai’ version ‘0.10.1’ ** package ‘future.mirai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.mirai) * installing *source* package ‘roxy.shinylive’ ... ** this is package ‘roxy.shinylive’ version ‘1.0.0’ ** package ‘roxy.shinylive’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxy.shinylive) * installing *source* package ‘irace’ ... ** this is package ‘irace’ version ‘4.2.0’ ** package ‘irace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgLNqLc/R.INSTALL3d308bdeb966/irace/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/irace.c -o iracebin/irace.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/whereami.c -o iracebin/whereami.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/irace.o iracebin/whereami.o -o iracebin/irace gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/ablation.c -o iracebin/ablation.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/ablation.o iracebin/whereami.o -o iracebin/ablation gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy/target-runner-dummy.c -o dummy/target-runner-dummy.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native dummy/target-runner-dummy.o -o dummy/target-runner-dummy make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgLNqLc/R.INSTALL3d308bdeb966/irace/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-irace/00new/irace ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irace) * installing *source* package ‘aion’ ... ** this is package ‘aion’ version ‘1.5.0’ ** package ‘aion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aion) * installing *source* package ‘tabula’ ... ** this is package ‘tabula’ version ‘3.3.1’ ** package ‘tabula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tabula) * installing *source* package ‘ezcox’ ... ** this is package ‘ezcox’ version ‘1.0.4’ ** package ‘ezcox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ezcox) begin installing package ‘UCSCXenaShiny’ * installing *source* package ‘rtables.officer’ ... ** this is package ‘rtables.officer’ version ‘0.1.0’ ** package ‘rtables.officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtables.officer) begin installing package ‘teal.reporter’ * installing *source* package ‘censored’ ... ** this is package ‘censored’ version ‘0.3.3’ ** package ‘censored’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censored) * installing *source* package ‘distances’ ... ** this is package ‘distances’ version ‘0.1.12’ ** package ‘distances’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqoefH1/R.INSTALL3d02e5d561a91/distances/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distances-init.c -o distances-init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error.c -o error.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c get_dists.c -o get_dists.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c internal.c -o internal.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c max_dists.c -o max_dists.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nn_search.c -o nn_search.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nn_search_ann.cpp -o nn_search_ann.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o (cd libann && R_AR="ar" R_CXX="g++-15 -std=gnu++17" R_CPPFLAGS="-DNDEBUG -I/usr/local/include" R_CXXFLAGS="-fpic -g -O2 -Wall -pedantic -mtune=native " R_INCLUDE_DIR="/home/hornik/tmp/R-d-gcc-15/include" make) || exit 1; make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpqoefH1/R.INSTALL3d02e5d561a91/distances/src/libann' g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/ANN.cpp -o src/ANN.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/brute.cpp -o src/brute.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_tree.cpp -o src/kd_tree.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_util.cpp -o src/kd_util.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_split.cpp -o src/kd_split.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_dump.cpp -o src/kd_dump.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_search.cpp -o src/kd_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_pr_search.cpp -o src/kd_pr_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/kd_fix_rad_search.cpp -o src/kd_fix_rad_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/bd_tree.cpp -o src/bd_tree.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/bd_search.cpp -o src/bd_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/bd_pr_search.cpp -o src/bd_pr_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/bd_fix_rad_search.cpp -o src/bd_fix_rad_search.o g++-15 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Iinclude -I"/home/hornik/tmp/R-d-gcc-15/include" -c src/perf.cpp -o src/perf.o ar -rcs libann.a src/ANN.o src/brute.o src/kd_tree.o src/kd_util.o src/kd_split.o src/kd_dump.o src/kd_search.o src/kd_pr_search.o src/kd_fix_rad_search.o src/bd_tree.o src/bd_search.o src/bd_pr_search.o src/bd_fix_rad_search.o src/perf.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpqoefH1/R.INSTALL3d02e5d561a91/distances/src/libann' g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o distances.so distances-init.o error.o get_dists.o internal.o max_dists.o nn_search.o nn_search_ann.o utils.o libann/libann.a -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqoefH1/R.INSTALL3d02e5d561a91/distances/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distances/00new/distances/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distances) * installing *source* package ‘rush’ ... ** this is package ‘rush’ version ‘0.3.0’ ** package ‘rush’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rush) * installing *source* package ‘dimensio’ ... ** this is package ‘dimensio’ version ‘0.14.1’ ** package ‘dimensio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dimensio) begin installing package ‘kairos’ begin installing package ‘nexus’ * installing *source* package ‘teal.data’ ... ** this is package ‘teal.data’ version ‘0.8.0’ ** package ‘teal.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.data) begin installing package ‘teal.slice’ * installing *source* package ‘archetypal’ ... ** this is package ‘archetypal’ version ‘1.3.1’ ** package ‘archetypal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archetypal) * installing *source* package ‘ggstatsplot’ ... ** this is package ‘ggstatsplot’ version ‘0.13.1’ ** package ‘ggstatsplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstatsplot) * installing *source* package ‘ggalign’ ... ** this is package ‘ggalign’ version ‘1.0.2’ ** package ‘ggalign’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggalign) * installing *source* package ‘probably’ ... ** this is package ‘probably’ version ‘1.1.1’ ** package ‘probably’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (probably) * installing *source* package ‘fastVoteR’ ... ** this is package ‘fastVoteR’ version ‘0.0.1’ ** package ‘fastVoteR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZVGADZ/R.INSTALL3d67d3c54a645/fastVoteR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c av.cpp -o av.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pav.cpp -o pav.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phragmen.cpp -o phragmen.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sav.cpp -o sav.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fastVoteR.so RcppExports.o av.o pav.o phragmen.o sav.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZVGADZ/R.INSTALL3d67d3c54a645/fastVoteR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastVoteR/00new/fastVoteR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastVoteR) * installing *source* package ‘kairos’ ... ** this is package ‘kairos’ version ‘2.3.0’ ** package ‘kairos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kairos) * installing *source* package ‘teal.reporter’ ... ** this is package ‘teal.reporter’ version ‘0.5.0’ ** package ‘teal.reporter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.reporter) * installing *source* package ‘nexus’ ... ** this is package ‘nexus’ version ‘0.6.0’ ** package ‘nexus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nexus) * installing *source* package ‘UCSCXenaShiny’ ... ** this is package ‘UCSCXenaShiny’ version ‘2.2.0’ ** package ‘UCSCXenaShiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSCXenaShiny) * installing *source* package ‘brotli’ ... ** this is package ‘brotli’ version ‘1.3.2’ ** package ‘brotli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQzDxeg/R.INSTALL3d0464afad3d3/brotli/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrapper.c -o wrapper.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references.c -o enc/backward_references.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/bit_cost.c -o enc/bit_cost.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/block_splitter.c -o enc/block_splitter.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/cluster.c -o enc/cluster.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment.c -o enc/compress_fragment.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encode.c -o enc/encode.o enc/encode.c:1473:20: warning: argument 5 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 1473 | const uint8_t* input_buffer, size_t* encoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from enc/encode.c:9: include/brotli/encode.h:314:19: note: previously declared as a variable length array ‘const uint8_t[input_size]’ {aka ‘const unsigned char[input_size]’} 314 | const uint8_t input_buffer[BROTLI_ARRAY_PARAM(input_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ enc/encode.c:1474:14: warning: argument 7 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 1474 | uint8_t* encoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/encode.h:316:13: note: previously declared as a variable length array ‘uint8_t[*encoded_size]’ {aka ‘unsigned char[*encoded_size]’} 316 | uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(*encoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/entropy_encode.c -o enc/entropy_encode.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/histogram.c -o enc/histogram.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/literal_cost.c -o enc/literal_cost.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/memory.c -o enc/memory.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/metablock.c -o enc/metablock.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/static_dict.c -o enc/static_dict.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/utf8_util.c -o enc/utf8_util.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/bit_reader.c -o dec/bit_reader.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/huffman.c -o dec/huffman.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/state.c -o dec/state.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/decode.c -o dec/decode.o dec/decode.c:2036:41: warning: argument 2 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 2036 | size_t encoded_size, const uint8_t* encoded_buffer, size_t* decoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from dec/decode.c:7: include/brotli/decode.h:204:19: note: previously declared as a variable length array ‘const uint8_t[encoded_size]’ {aka ‘const unsigned char[encoded_size]’} 204 | const uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(encoded_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dec/decode.c:2037:14: warning: argument 4 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 2037 | uint8_t* decoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/decode.h:206:13: note: previously declared as a variable length array ‘uint8_t[*decoded_size]’ {aka ‘unsigned char[*decoded_size]’} 206 | uint8_t decoded_buffer[BROTLI_ARRAY_PARAM(*decoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/dictionary.c -o common/dictionary.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references_hq.c -o enc/backward_references_hq.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/dictionary_hash.c -o enc/dictionary_hash.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/transform.c -o common/transform.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encoder_dict.c -o enc/encoder_dict.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/platform.c -o common/platform.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/context.c -o common/context.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/constants.c -o common/constants.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/command.c -o enc/command.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/fast_log.c -o enc/fast_log.o ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o brotli.so wrapper.o -Lenc -lstatbrotli -L/home/hornik/tmp/R-d-gcc-15/lib -lR gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools/brotli.c -o tools/brotli.o mkdir -p ../inst/bin g++-15 -std=gnu++17 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -Wl,-O1 rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQzDxeg/R.INSTALL3d0464afad3d3/brotli/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brotli/00new/brotli/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brotli) begin installing package ‘reqres’ * installing *source* package ‘teal.slice’ ... ** this is package ‘teal.slice’ version ‘0.7.0’ ** package ‘teal.slice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.slice) * installing *source* package ‘reqres’ ... ** this is package ‘reqres’ version ‘1.0.0’ ** package ‘reqres’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaXevmV/R.INSTALL3e3e627153726/reqres/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reqres.c -o reqres.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o reqres.so reqres.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaXevmV/R.INSTALL3e3e627153726/reqres/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reqres/00new/reqres/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reqres) begin installing package ‘fiery’ * installing *source* package ‘httk’ ... ** this is package ‘httk’ version ‘2.7.2’ ** package ‘httk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB0DU7F/R.INSTALL3d04035378bd7/httk/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dermal.c -o dermal.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dermal_1subcomp.c -o dermal_1subcomp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fetal_pbtk_vols_out_v2.c -o fetal_pbtk_vols_out_v2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model1comp.c -o model1comp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model1comp_lifestage.c -o model1comp_lifestage.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp.c -o model3comp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp2.c -o model3comp2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model3comp_lifestage.c -o model3comp_lifestage.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_1tri_pbtk_v2.c -o model_1tri_pbtk_v2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_gas_pbtk.c -o model_gas_pbtk.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modelpbtk.c -o modelpbtk.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modelpbtk_lifestage.c -o modelpbtk_lifestage.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c skin_mm.c -o skin_mm.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o httk.so dermal.o dermal_1subcomp.o fetal_pbtk_vols_out_v2.o init.o model1comp.o model1comp_lifestage.o model3comp.o model3comp2.o model3comp_lifestage.o model_1tri_pbtk_v2.o model_gas_pbtk.o modelpbtk.o modelpbtk_lifestage.o skin_mm.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB0DU7F/R.INSTALL3d04035378bd7/httk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-httk/00new/httk/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httk) * installing *source* package ‘mapedit’ ... ** this is package ‘mapedit’ version ‘0.7.0’ ** package ‘mapedit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapedit) * installing *source* package ‘watcher’ ... ** this is package ‘watcher’ version ‘0.1.4’ ** package ‘watcher’ successfully unpacked and MD5 sums checked ** using staged installation Compiling 'libfswatch' from source... Detecting 'cmake'... /usr/bin/cmake -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Gettext: /usr/bin/msgmerge (found version "0.23.1") -- Found Intl: built in to C library -- Looking for C++ include getopt.h -- Looking for C++ include getopt.h - found -- Looking for getopt_long -- Looking for getopt_long - found -- Performing Test HAVE_STRUCT_STAT_ST_MTIME -- Performing Test HAVE_STRUCT_STAT_ST_MTIME - Success -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC - Failed -- Looking for C++ include sys/inotify.h -- Looking for C++ include sys/inotify.h - found -- Looking for C++ include sys/event.h -- Looking for C++ include sys/event.h - not found -- Looking for C++ include port.h -- Looking for C++ include port.h - not found -- Looking for FindFirstChangeNotification -- Looking for FindFirstChangeNotification - not found -- Configuring done (2.8s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpLtLwZJ/R.INSTALL3d80a206abbbb/watcher/fswatch-5c443d2 gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLtLwZJ/R.INSTALL3d80a206abbbb/watcher/fswatch-5c443d2' [ 7%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/cevent.cpp.o [ 15%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch.cpp.o [ 23%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch_log.cpp.o [ 30%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/event.cpp.o [ 38%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/filter.cpp.o [ 46%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/libfswatch_exception.cpp.o [ 53%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor.cpp.o [ 61%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor_factory.cpp.o [ 69%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/path_utils.cpp.o [ 76%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/poll_monitor.cpp.o [ 84%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/string/string_utils.cpp.o [ 92%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/inotify_monitor.cpp.o [100%] Linking CXX static library libfswatch.b [100%] Built target libfswatch Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLtLwZJ/R.INSTALL3d80a206abbbb/watcher/fswatch-5c443d2' ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLtLwZJ/R.INSTALL3d80a206abbbb/watcher/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c link.cpp -o link.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c watcher.c -o watcher.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o watcher.so init.o link.o watcher.o ../install/lib/libfswatch.b -lpthread -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLtLwZJ/R.INSTALL3d80a206abbbb/watcher/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-watcher/00new/watcher/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (watcher) * installing *source* package ‘fiery’ ... ** this is package ‘fiery’ version ‘1.3.0’ ** package ‘fiery’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fiery) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.34.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) * installing *source* package ‘GJRM’ ... ** this is package ‘GJRM’ version ‘0.2-6.8’ ** package ‘GJRM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GJRM) checking mirai_2.5.0.tar.gz ... checking bregr_1.2.0.tar.gz ... checking chopin_0.9.4.tar.gz ... checking crew_1.2.1.tar.gz ... checking future.mirai_0.10.1.tar.gz ... checking GeomArchetypal_1.0.3.tar.gz ... checking gratia_0.11.1.tar.gz ... checking ichimoku_1.5.6.tar.gz ... checking invivoPKfit_2.0.2.tar.gz ... checking kinesis_0.2.1.tar.gz ... checking pliman_3.1.1.tar.gz ... checking reqres_1.0.0.tar.gz ... checking rush_0.3.0.tar.gz ... checking bbotk_1.6.0.tar.gz ... checking important_0.0.1.tar.gz ... checking logger_0.4.0.tar.gz ... checking mlr3fselect_1.4.0.tar.gz ... checking mlr3hyperband_1.0.0.tar.gz ... checking mlr3mbo_0.3.1.tar.gz ... checking mlr3misc_0.18.0.tar.gz ... checking mlr3tuning_1.4.0.tar.gz ... checking purrr_1.1.0.tar.gz ... checking routr_1.0.0.tar.gz ... checking shiny_1.11.1.tar.gz ... checking shinyscholar_0.4.2.tar.gz ... checking teal_1.0.0.tar.gz ... checking tune_2.0.0.tar.gz ... checking worldmet_0.10.1.tar.gz ... Depends: Package: mirai Depends: R (>= 3.6) Imports: nanonext (>= 1.7.0) Timings: user system elapsed mirai 37.766 4.111 43.926 Results: Check status summary: OK Source packages 1 Reverse depends 27 Check results summary: mirai ... OK rdepends_bbotk ... OK rdepends_bregr ... OK rdepends_chopin ... OK rdepends_crew ... OK rdepends_future.mirai ... OK rdepends_GeomArchetypal ... OK rdepends_gratia ... OK rdepends_ichimoku ... OK rdepends_important ... OK rdepends_invivoPKfit ... OK rdepends_kinesis ... OK rdepends_logger ... OK rdepends_mlr3fselect ... OK rdepends_mlr3hyperband ... OK rdepends_mlr3mbo ... OK rdepends_mlr3misc ... OK rdepends_mlr3tuning ... OK rdepends_pliman ... OK rdepends_purrr ... OK rdepends_reqres ... OK rdepends_routr ... OK rdepends_rush ... OK rdepends_shiny ... OK rdepends_shinyscholar ... OK rdepends_teal ... OK rdepends_tune ... OK rdepends_worldmet ... OK