downloading reverse dependencies ... downloading GoMiner_1.0.tar.gz ... ok downloading HTGM_1.1.tar.gz ... ok downloading HTGM2D_1.0.tar.gz ... ok installing dependencies ‘GoMiner’, ‘HGNChelper’, ‘HTGM’, ‘jaccard’, ‘minimalistGODB’ begin installing package ‘minimalistGODB’ begin installing package ‘HGNChelper’ begin installing package ‘jaccard’ * installing *source* package ‘HGNChelper’ ... ** this is package ‘HGNChelper’ version ‘0.8.15’ ** package ‘HGNChelper’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HGNChelper) * installing *source* package ‘minimalistGODB’ ... ** this is package ‘minimalistGODB’ version ‘1.1.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minimalistGODB) begin installing package ‘GoMiner’ * installing *source* package ‘jaccard’ ... ** this is package ‘jaccard’ version ‘0.1.0’ ** package ‘jaccard’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkkdWpY/R.INSTALL2d9c4176e50287/jaccard/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c jaccard_mca_rcpp.cpp -o jaccard_mca_rcpp.o jaccard_mca_rcpp.cpp: In member function ‘bool LayeredMarginal::next()’: jaccard_mca_rcpp.cpp:418:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 418 | for(unsigned int jj = 0; jj < isotopeNo; jj++ ) | ^~~ jaccard_mca_rcpp.cpp:442:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 442 | return true; | ^~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o jaccard.so RcppExports.o jaccard_mca_rcpp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkkdWpY/R.INSTALL2d9c4176e50287/jaccard/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-jaccard/00new/jaccard/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jaccard) * installing *source* package ‘GoMiner’ ... ** this is package ‘GoMiner’ version ‘1.0’ ** package ‘GoMiner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GoMiner) begin installing package ‘HTGM’ * installing *source* package ‘HTGM’ ... ** this is package ‘HTGM’ version ‘1.1’ ** package ‘HTGM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HTGM) checking minimalistGODB_1.1.0.tar.gz ... checking GoMiner_1.0.tar.gz ... checking HTGM_1.1.tar.gz ... checking HTGM2D_1.0.tar.gz ... Depends: Package: minimalistGODB Depends: R (>= 4.2.0) Timings: user system elapsed minimalistGODB 24.978 3.194 28.972 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: minimalistGODB ... OK rdepends_GoMiner ... OK rdepends_HTGM ... OK rdepends_HTGM2D ... OK