Accurate, Adaptable, and Accessible Error Metrics for Predictive
Models
Access to Abbyy Optical Character Recognition (OCR) API
Tools for Approximate Bayesian Computation (ABC)
Data Only: Tools for Approximate Bayesian Computation (ABC)
Array Based CpG Region Analysis Pipeline
Computed ABC Analysis
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance
Analysis with this package
Implementation of Artificial Bee Colony (ABC) Optimization
Approximate Bayesian Computational Model for Estimating P2
Approximate Bayesian Computation via Random Forests
Tools for ABC Analyses
The Analysis of Biological Data
Augmented Backward Elimination
Load Gap-Free Axon ABF2 Files
Easy Visualization of ABH Genotypes
Combine Multidimensional Arrays
Useful Tools for Jurimetrical Analysis Used by the Brazilian
Jurimetrics Association
Modelling Multivariate Data with Additive Bayesian Networks
Angle-Based Outlier Detection
The Abnormal Blood Profile Score to Detect Blood Doping
Improved False Positive Control of Gene-Permuting GSEA with
Absolute Filtering
Time Resolved Simulations of Antibody Repertoires
High-Dimensional Principal Fitted Components and Abundant
Regression
Abrupt Change-Point or Aberration Detection in Point Series
Exploring Accelerometer Data
Functions for Processing Minute-to-Minute Accelerometer Data
Missing Value Imputation for Accelerometer Data
Creation and Evaluation of Acceptance Sampling Plans
ACC & LMA Graph Plotting
Bayesian Accrual Prediction
Data Quality Visualization Tools for Partially Accruing Data
Accelerated Sparse Discriminant Analysis
Categorical data analysis with complete or missing responses
Tools for Autoregressive Conditional Duration Models
Optimal Bayesian Experimental Design using the ACE Algorithm
ACE and AVAS for Selecting Multiple Regression Transformations
Estimating Dynamic Heritability and Twin Model Comparison
Analysing Conditional Income Distributions
Align-and-Count Method comparisons of RFLP data
Estimation of Interpretable eQTL Effect Sizes Using a Log of
Linear Model
Implements ACME Estimator of Bird and Bat Mortality by Wind
Turbines
Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Annotated Copy-Number Regions
Modelling dependence with multivariate Archimax (or any
user-defined continuous) copulas
Coding Sound Files for Use with NDL
Autoregressive Conditional Poisson
Convenience functions for analytical Customer Relationship
Management
A Cost-Minimal Regular Spanning Subgraph with TreeClust
Autocorrelation Robust Testing
Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Gene Enrichment Analysis from ACSN Maps or GMT Files
Algorithmic Complexity for Short Strings
Data Only: Algorithmic Complexity of Short Strings (Computed via
Coding Theorem Method)
A Companion Package for the Book "A Course in Statistics with R"
Asymptotic Classification Theory for Cognitive Diagnosis
Actigraphy Data Analysis
Finding Cancer Driver Proteins with Enriched Mutations in
Post-Translational Modification Sites
Animal Activity Statistics
Process activPAL Events Files
Read in Activity Data and Plot Actograms
Actuarial Functions and Heavy Tailed Distributions
A Package for Displaying Visual Scenes as They May Appear to an
Animal with Lower Acuity
The R Package Ada for Stochastic Boosting
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Discrete and Global Optimization Routines
A Class of Adaptive Elastic Net Methods for Censored Data
Implementation of an Accountable Data Analysis Process
Adaptive Sampling Algorithms
Adaptive Mixture Discriminant Analysis
Adaptive Semiparametic Regression
Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Gaussian Mixture Models (GMM)
Adaptive Generalized PCA
Adaptive Sparsity Models
Tau-Leaping Stochastic Simulation
Implementation of a Generic Adaptive Monte Carlo Markov Chain
Sampler
Adaptive Smoothing of FMRI Data
Adaptive two-stage tests
Adaptive Design in Clinical Trials
Binomial and Multinomial Additive Hazards Models
Fit Additive Hazards Models for Survival Analysis
Discover and Install Useful RStudio Addins
Additive Data Envelopment Analysis Models
Additivity Tests in the Two Way Anova with Single Sub-class
Numbers
Additive Regression for Discrete Data
Analysis of Accelerated Destructive Degradation Test Data
Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
'ade4' Tcl/Tk Graphical User Interface
Adaptive Density Estimation by Bayesian Averaging
Exploratory Analysis of Genetic and Genomic Data
An S4 Lattice-Based Package for the Representation of
Multivariate Data
Analysis of Habitat Selection by Animals
Home Range Estimation
Analysis of Habitat Selection by Animals
Analysis of Animal Movements
Tools to Deal with Raster Maps
Exploratory Analyses for the Phylogenetic Comparative Method
A Shiny Application for the (Audio-)Visualization of Adverse
Event Profiles
Adequacy of Probabilistic Models and General Purpose
Optimization
Multivariate Multiscale Spatial Analysis
Import from and Export to Amiga Disk Files
Anderson-Darling GoF test
Adherence to Medications
Calculate Ad Hoc Distance Thresholds for DNA Barcoding
Identification
Adaptive Smoothing of Digital Images
Analysis of Diversity
Adjusted Bayesian Quantile Regression Inference
Adjacency-Constrained Clustering of a Block-Diagonal Similarity
Matrix
Remove Automated and Repeated Downloads from 'RStudio' 'CRAN'
Download Logs
An Adaptive Lifting Scheme Algorithm
An Interpretation of the ADM method - automated detection
algorithm
Adaptive Mixture of Student-t Distributions
Admixture Graph Manipulation and Fitting
Algorithms using Alternating Direction Method of Multipliers
Regularized Model with Selecting the Number of Non-Zeros
Fast Clustering Using Adaptive Density Peak Detection
Use Least Squares Polynomial Regression and Statistical Testing
to Improve Savitzky-Golay
Spatial point patterns analysis
Upper Clopper-Pearson Confidence Limits for Burn-in Studies
under Additional Available Information
Object Oriented Advanced Clustering
Wavelet Analysis of Genomic Data from Admixed Populations
Change Point Analysis in ARIMA Forecasting
Download and Process AEMO Price and Demand Data
Applied Econometrics with R
Model-Based Estimation of Confounder-Adjusted Attributable
Fractions
Generalized Discrimination Score
Active Function Cross-Entropy Clustering
Analysis of Factorial Experiments
Affluence Indices
Hybrid Simulation and Genome Scan for Dominant Markers
Atomic Force Microscope Image Analysis
Functions for Atomic Force Microscope Force-Distance Curves
Analysis
Tools for Modelling of Animal Flight Performance
Accelerated Failure Time Model with Generalized Estimating
Equations
Analysis of Growth Data
Aggregate Numeric, Date and Categorical Variables by an ID
p-Value Aggregation Methods
Aggregation Operators and Preordered Sets
Various Methods for Measuring Agreement
Statistical Tools for Measuring Agreement
Statistical Procedures for Agricultural Research
Agricultural Datasets
Tutorial Analysis of Some Agricultural Experiments
Calculate Agreement or Consensus in Ordered Rating Scales
Estimation in Adaptive Group Sequential Trials
Miscellaneous plotting and utility functions
Regularization for semiparametric additive hazards regression
Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology'
An Implementation of the Artificial Hydrocarbon Networks
Fast Searching for Multiple Keywords in Multiple Texts
Analytic Hierarchy Process
Estimation and Testing of Average Hazard Ratios
Model Selection and Multimodel Inference Based on (Q)AIC(c)
Box-Cox Power Transformation
Tools for reading AIDA (http://aida.freehep.org/) files into R
Automatic Item Generator
AIM: adaptive index model
Create Pie Like Plot for Completeness
Download Mexico City Pollution, Wind, and Temperature Data
Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Atmospheric Thermodynamics and Visualization
Another JSON Schema Validator
Associated Kernel Estimations
Interpolation of Irregularly and Regularly Spaced Data
Adaptive Kmeans algorithm based on threshold
Atlas of Living Australia (ALA) Data and Resources in R
Constrained Nonlinear Optimization
Immunoglobulin Clonal Lineage and Diversity Analysis
The Asymmetric Laplace Distribution
Quantile Regression Using Asymmetric Laplace Distribution
Accumulated Local Effects (ALE) Plots and Partial Dependence
(PD) Plots
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS
Proteomics Data
Downloading Time Series from ALFRED Database for Various
Vintages
Algorithmic Experimental Design
Haplotype Two Snips Out of a Paired Group of Patients
Allows you to Easily Interact with the Algorithmia Platform
Algebraic statistics in R
Comparison of Alternative Multiple Sequence Alignments
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
Generate Age-Length Keys for fish populations
Automated Large Linear Analysis Node
Allan Variance Analysis
Allele Imputation and Haplotype Reconstruction from Pedigree
Databases
Identifying unique multilocus genotypes where genotyping error
and missing data may be present
Allele Retention, Inbreeding, and Demography
A fast, unbiased and exact allelic exact test
Computes all of a word's possible spellings
Alluvial Diagrams
Algorithms for High-Throughput Sequencing of Antigen-Specific T
Cells
Generalization of the Convex Hull of a Sample of Points in the
Plane
Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Implementation of the 3D Alpha-Shape for the Reconstruction of
3D Sets from a Point Cloud
Wrapper for Alpha Vantage API
Lightweight R Interface to the Alpha Vantage API
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 4rd edition
Multivariate Curve Resolution Alternating Least Squares
(MCR-ALS)
Accelerated line search algorithm for simultaneous orthogonal
transformation of several positive definite symmetric matrices
to nearly diagonal form
Companion to Applied Linear Statistical Models
An 'API' Client for the 'Alteryx' Gallery
Alternative Meta-Analysis Methods
Optimal Experimental Designs for Accelerated Life Testing
Another Multidimensional Analysis Package
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Ground Water Modelling
A Model Comparison Perspective
Generate LaTeX Code for Auto-Multiple-Choice (AMC)
European Commission Annual Macro-Economic (AMECO) Database
Adaptive Management of Epidemiological Interventions
A Program for Missing Data
Additive and Multiplicative Effects Models for Networks and
Relational Data
This package includes pricing function for selected American
call options with underlying assets that generate payouts
The Ames Iowa Housing Data
Post-processing tool for ADAPT 5
Alternating Minimization Induced Active Set Algorithms
Adaptive Mixed LASSO
Adaptive Management Model Manager
Un-Ionized Ammonia Concentration
A Multidirectional Optimum Ecotope-Based Algorithm
A MORE flexible neural network package
Generates Samples or Complete List of Brazilian IBGE (Instituto
Brasileiro De Geografia e Estatistica) Census Households,
Geocoding it by Google Maps
An Algorithm for Automatic Peak Detection in Noisy Periodic and
Quasi-Periodic Signals
Statistical Analysis of Amplicon Data of the Same Sample to
Identify Artefacts
Prediction of Amyloid Proteins
Analysis of Codon Data under Stationarity using a Bayesian
Framework
Simple and Canonical Correspondence Analysis
Interface to 'Digital Ocean'
Analogue and Weighted Averaging Methods for Palaeoecology
Additional Functions for Use with the Analogue Package
Regression Outlier Detection, Stationary Bootstrap, Testing Weak
Stationarity, and Other Tools for Data Analysis
Model Layer for Automatic Data Analysis via CSV File
Interpretation
Functions for analysis of fMRI datasets stored in the ANALYZE or
NIFTI format
Analyze Fuzzy Time Series
Tools for microarray data analysis
Assigning Ancestry Based on Population References
Post-Processing for the Method of Anchored Distributions
Statistical analysis of surveys with anchoring vignettes
An extended Bayesian Learning Technique developed by Dr. Geoff
Webb
Andrews curves
ANES Raking Implementation
Adaptive Neuro Fuzzy Inference System in R
Simulate a Bus Route Creel Survey of Anglers
Tools for 'ROMS' the Regional Ocean Modeling System
Inferring Dominance Hierarchies and Estimating Uncertainty
Simple Animated Plots for R
Animal track reconstruction for high frequency 2-dimensional
(2D) or 3-dimensional (3D) movement data
A Gallery of Animations in Statistics and Utilities to Create
Animations
Animate Paths
Build Text Prediction Model
Compute High Dimensional Orthant Probabilities
Artificial Neural Networks for Anomaly Detection
Extract Subsequences from GenBank Annotations
AnnotLists: A tool to annotate multiple lists from a specific
annotation file
Integrated Framework to Annotate Genetic Variants
Annuity Random Interest Rates
A Non-Parametric Statistical Test to Compare Clustering
Structures
Analysis of Interactions
Analysis of Means
Implementation of Augmented Network Log Anomaly Detection
Procedures
Alpha-NOMINATE Ideal Point Estimator
Anonymize Data Containing Personally Identifiable Information
Test ANOVA Replications by Means of the Prior Predictive p-Value
Anti-Angiogenic Peptide Prediction
Antares Results Processing
Import, Manipulate and Explore the Results of an Antares
Simulation
Antares Visualizations
An R-Shiny Application for Smith's Mean Measure of Divergence
(MMD)
Statistical Methods for Anthropometric Data
Tools for Antitrust Practitioners
Extract Text from Microsoft Word Documents
programmatic interface to the AntWeb
Anything to 'POSIXct' or 'Date' Converter
Analysis of Overdispersed Data
Analysis of Overdispersed Data using S3 methods
Another Object Orientation System
Adverse Outcome Pathway Analysis
A-Optimal Block Designs for Comparing Test Treatments with
Controls
aoristic analysis with spatial output (kml)
Format Outputs of Statistical Tests According to APA Guidelines
Process the Apache Web Server Log Files
Generate APA Tables for MS Word
Create American Psychological Association (APA) Style Tables
Age-Period-Cohort Analysis
Analysis of Unreplicated Orthogonal Experiments using All
Possible Comparisons
Affinity Propagation Clustering
An Implementation of the Additive Polynomial Design Matrix
Analyses of Phylogenetics and Evolution
Quick Look at your Data
Phylogenetic Methods for Multiple Gene Data
Geo-Processing Helper Functions
Analysis with Profile Hidden Markov Models
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic
Regression" (3rd Ed., 2013)
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R,
plotsummary, plothulls, and some slider functions
Augmented and Penalized Minimization Method L0
Pre- and Postprocessing for AP-MS data analysis based on
spectral counts
Convert Png Files into Animated Png
Compute Appell's F1 hypergeometric function
Adjusted Prediction Model Performance Estimation
Approximate Path for Penalized Likelihood Estimators
Functions and Data Sets for 'Applied Predictive Modeling'
Amyloid Propensity Prediction Neural Network
Bayesian prediction of complex computer codes
Approximately Optimal Fine Balance Matching with Multiple Groups
Datasets from Draper and Smith "Applied Regression Analysis"
(3rd Ed., 1998)
Tools for the a Priori Comparison of Regression Modelling
Strategies
Amdahl's Profiler, Directed Optimization Made Easy
General Utility Functions for the 'Agricultural Production
Systems Simulator'
Analysis the output of Apsim software
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable model-output formatter for social science
Asymmetric Price Transmission
Automatic Phylogenetic Tree Generator
Average Positive Predictive Values (AP) for Binary Outcomes and
Censored Event Times
Analyses of Phylogenetic Treeshape
Functions to help display air quality model output and
monitoring data
Algorithms for Quantitative Pedology
Interface methods to use with an ActiveQuant Master Server
Integrated Development Toolbox for Aquatic Chemical Model
Generation
Another Look at the Acceptance-Rejection Method
Segmentation of an autoregressive Gaussian process of order 1
Arabic Stemmer for Text Analysis
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Association Rule Classification
Fitting Univariate Censored Linear Regression Model with
Autoregressive Errors
Bayesian Modeling of Archaeological Chronologies
Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Example Datasets from Archaeological Research
Archetypal Analysis
Plant Root System Architecture Analysis Using DART and RSML
Files
Tools for Storing, Restoring and Searching for R Objects
Tools for Archiving, Managing and Sharing R Objects via GitHub
Artificial Counterfactual Package
Time series autoregressive-based decomposition
Plot Stacked Areas and Confidence Bands as Filled Polygons
Activated Region Fitting, fMRI data analysis (3D)
Fractional ARIMA (and Other Long Memory) Time Series Modeling
Arfima-MLM Estimation For Repeated Cross-Sectional Data
Secure Password Hashing
Argos locations filter
Command Line Optional and Positional Argument Parser
Command-Line Argument Parser
Improved Communication to Users with Respect to Problems in
Function Arguments
Automated R Instructor
Data Analysis Using Regression and Multilevel/Hierarchical
Models
"Arnie" box office records 1982-2014
Analysis of Large Affymetrix Microarray Data Sets
A Probe-Level Data File Format Used by 'aroma.affymetrix'
[deprecated]
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Tools for Simulating Direct Behavioral Observation Recording
Procedures Based on Alternating Renewal Processes
Arps Decline Curve Analysis in R
Fast Generators and Iterators for Permutations, Combinations and
Partitions
Apply a Function to a Margin of an Array
Binarization of numeric data arrays
Convenience Functions for Arrays
Adaptive Rejection Sampling
An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Aligned Rank Transform for Nonparametric Factorial Analysis
ARTFIMA Model Estimation
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme
VArying) Model
Aligned Rank Transform
Gene and Pathway p-values computed using the Adaptive Rank
Truncated Product
Pathway and Gene-Level Association Test
Mining Association Rules and Frequent Itemsets
Classification Based on Association Rules
Mining NB-Frequent Itemsets and NB-Precise Rules
Mining Frequent Sequences
Visualizing Association Rules and Frequent Itemsets
Interface to the arXiv API
Assign Random Colors to Unique Items in a Vector
Data Sets for "Applied Survival Analysis Using R""
A Collection of Statistical Tools for Biologists
Export R objects to several markup languages
Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and
Setup Files (.sps or .sas)
Simulations for Adaptive Seamless Designs
Reading ASD Binary Files in R
David Scott's ASH Routines
Methods for Adaptive Shrinkage, using Empirical Bayes
Applied Statistical Hypothesis Tests
Automatic Statistical Identification in Complex Spectra
'Asio' C++ Header Files
Automated Satellite Image Processing
Interface to the Algorithm Selection Benchmark Library
Linkage Map Construction using the MSTmap Algorithm
Animal Social Network Inference and Permutations for Ecologists
A collection of functions for estimating centrographic
statistics and computational geometries for spatial point
patterns
Bayesian Inference on Causal Genetic Variants using Affected
Sib-Pairs Data
An Adaptive Sum of Powered Correlation Test (aSPC) for Global
Association Between Two Random Vectors
A General Framework for Multivariate Analysis with Optimal
Scaling
Analysis of Symmetry of Parasitic Infections
Adaptive Sum of Powered Score Test
Augments the Use of 'ASReml-R' in Fitting Mixed Models
Detection and Correction of Spatial Bias in HTS Screens
Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Readable Check Functions to Ensure Code Integrity
A Lightweight Core of the 'assertive' Package
Assertions to Check Properties of Code
Assertions to Check Properties of Data
Assertions to Check Properties of Strings
Assertions to Check Properties of Strings
Assertions to Check Properties of Dates and Times
Assertions to Check Properties of Files
Assertions to Check Properties of Matrices
Assertions to Check Properties of Models
Assertions to Check Properties of Numbers
Assertions to Check Properties of Variables
Assertions for Checking the State of R
Assertions to Check Properties of Sets
Assertions to Check Properties of Strings
Assertions to Check Types of Variables
Assertive Programming for R Analysis Pipelines
Easy Pre and Post Assertions
Optimal pricing of assets with fixed expiry date
Population Assignment using Genetic, Non-Genetic or Integrated
Data in a Machine Learning Framework
A Suite of R Functions Implementing Spline Smoothing Techniques
Adaptive Subgroup Selection in Group Sequential Trials
Allele Frequency Comparison
Implements New and Existing Association Indices for Constructing
Animal Social Networks
Genetic Association Studies
Calculate the Assortativity Coefficient of Weighted and Binary
Networks
Statistical Tests for Genetic Association Studies
Aster Models
Aster Models
Astronomy Functions, Tools and Routines
A Computational Tool for Astrochronology
Astronomical Data
Astronomy: time and position functions, misc. utilities
Astronomy Users Library
Applied Statistical Time Series Analysis
Adaptive SURE Thresholding Using Side Information
Average Shifted Visual Predictive Checks
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic
Data
Visualizing Asymmetric Data
Asymptotic statistic
Regression Analysis of Sparse Asynchronous Longitudinal Data
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Inference for Average Treatment Effects using Covariate
Balancing
A GTK GUI for teaching basic concepts in statistical inference,
and doing elementary bayesian tests
Process and Visualise Output from Atlantis Models
Automatically Tuned Markov Chain Monte Carlo
Advanced Tools for Metrology
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Alternative Tree Representation
Alternative Time Series Analysis
Support Querying Axibase Time-Series Database
Easy Condition Handling
Tools for Attribute VSI CUSUM Control Chart
Population Attributable Risk
American Time Use Survey Data
Threshold independent performance measures for probabilistic
classifiers
AUC Maximization
Variable Selection with Random Forest and the Area Under the
Curve
Statistical Testing for AUC Data
Audio Interface for R
audiolyzR: Give your data a listen
Bounds for Accounting Populations
Analysis of Data with Mixed Measurement Error and
Misclassification in Covariates
eBird Data Extraction and Processing with AWK
Generates PFA Documents from R Code and Optionally Runs Them
Creates a Neighbourhood Using Locality Sensitive Hashing for
Gaussian Projections
Various Methods to Estimate the AUC
Approximate Unconditional and Permutation Tests
Automatic Variable Reduction Using Principal Component Analysis
Learning to Rank Bagging Workflows with Metalearning
An Interface to the 'AutoDesk' 'API' Platform
Sparse Autoencoder for Automatic Learning of Representative
Features from Unlabeled Data
Multiple Heat Maps for Projected Coordinates
Automagically Document and Install Packages Necessary to Run R
Code
Automatic interpolation package
Automated Hierarchical Multiple Regression with Assumptions
Checking
Autologistic and Automultinomial Spatial Regression and Variable
Selection
Automatic Generation of Interactive Visualizations for Popular
Statistical Results
Development of Visualization Tools for Protein Sequence
Partial Least Squares Regression with Backward Selection of
Predictors
Minimum Distance Estimation in Autoregressive Model
General-to-Specific (GETS) Modelling
Performs Specification Search in Structural Equation Models
An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Automated Vector Autoregression Models and Networks
Check if the Title of a Package is Available, Appropriate and
Interesting
Calculation of Average Population Attributable Fractions and
Confidence Intervals
Adaptation of Virtual Twins Method from Jared Foster
'AWS' Java 'SDK' for R
'AWS' Athena 'DBI' Wrapper
Amazon 'Kinesis' Consumer Application for Stream Processing
A Simple Client to the 'AWS' Key Management Service
Adaptive Weights Smoothing
Client for the Amazon Alexa Web Information Services API
AWS CloudTrail Client Package
Get EC2 Instance Metadata
AWS IAM Client Package
AWS Lambda Client Package
Client for AWS Polly
AWS S3 Client Package
AWS SES Client Package
Amazon Web Services Request Signatures
AWS SNS Client Package
AWS SQS Client Package
Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK
Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri', 'dwi'
Amazon Web Services Bundle Package
A generalization of Fisher's exact test
Interface with Azure Machine Learning Datasets, Experiments and
Web Services
Bayesian Two-Zone Model
Adaptive differential evolution, b6e6rl variant
Bayesian Bacterial Growth Curve Analysis in R
Ribosome Profiling Data Analysis
Bayesian Bootstrap Predictive Mean Matching - Multiple and
Single Imputation for Discrete Data
US Baby Names 1880-2015
Bubble Chart to Compare Biological Annotations by using DAVID
Modeling Framework for Cellular Communities in their
Environments
Bayesian Analysis of Computer Code Output (BACCO)
Bayesian Augmented Control for Clinical Trials
Bindings to the Backblaze B2 API
Backward Pipe Operator
Reimplementations of Functions Introduced Since R-3.0.0
Learning Causal Cyclic Graphs from Unknown Shift Interventions
Exploring Portfolio-Based Conjectures About Financial
Instruments
Interactive Graphics for Portfolio Data
Choice of the Hyperparameter Omega in the Bayesian Adjustment
for Confounding (BAC) Algorithm
Bayesian Adjustment for Confounding
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in
Github Readme
Badge for R Package
Bayesian Average Error approach to Sample Size Determination
BAses GIving DIStances
Ensemble bagging and boosting classifiers
Bayesian Analysis of Item Response Theory Models
Library Driven Compound Profiling in Gas Chromatography - Mass
Spectrometry Data
Balance Check for Multiple Covariates in Matched Observational
Studies
Balanced and Spatially Balanced Sampling
Better ALignment CONsensus analYsis
Statistical Inference and Sure Independence Screening via Ball
Statistics
Access to Current and Historical Basketball Data
Functions and Datasets for Books by Jeff Gill
Bivariate Angular Mixture Models
Protein Secondary Structure Prediction Using the Bamboo Method
Bayesian Meta-Analysis of Diagnostic Test Data
Bayesian Additive Models for Location Scale and Shape (and
Beyond)
Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Functions for simple A/B split test and multi-armed bandit
analysis
Bayesian Network Feature Finder
Bayesian Analysis, No Gibbs
Make Banner Comments with a Consistent Format
Hierarchical Bayesian ANOVA Models
R Client for the BAN API
Download Data from the Bank of Mexico
Batch Effect Removal and Addon Normalization (in Phenotype
Prediction using Gene Data)
Bayesian Prediction of Stochastic Processes
Function Minimum Approximator
Barcode distribution plots
Species Identification using DNA Barcodes
Barnard's Unconditional Test
Bayesian Additive Regression Trees
Bayesian Additive Regression Trees
bartMachine JARs
Regularized Wasserstein Distances and Barycenters
Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Bayesian Variable Selection with Shrinking and Diffusing Priors
Base64 Encoder and Decoder
Tools for base64 encoding
Fast and URL-Safe Base64 Encoder and Decoder
Sabermetrics and Advanced Baseball Statistics
Infrastructure for Computing with Basis Functions
Baseline Correction of Spectra
Construct Rich Tables for Output to 'HTML'/'Excel'
Add Trendline of Basic Regression Models to Plot
Classification of mRNA and lncRNA Sequences using Complex
Network Theory
BASIX: An efficient C/C++ toolset for R
Bayesian Adaptive Spline Surfaces
Age-Specific Survival Analysis from Incomplete
Capture-Recapture/Recovery Data
Big Data Statistical Analysis for High-Dimensional Models
Biodiversity Assessment Tools
HTML reports and so on
Batching Routines in Parallel and Passing Command-Line Arguments
to R
Statistical Experiments on Batch Computing Clusters
Downloads and Organizes Financial Data for Multiple Tickers
Batch Computing with R
Software for the Creation of High Density Linkage Maps in
Outcrossing Species
Consistent Batch Means Estimation of Monte Carlo Standard Errors
Tools for Computation on Batch Systems
Bayesian Tensor Factorization Linked to External Data
Convert Categorical Representations of Logicals to Actual
Logicals
An R Package for Data Reduction by Battery Reduction
Bayesian Feature Allocation Model for Tumor Heterogeneity
Fast Bayesian Methods for AB Testing
Bayesian Inference for Image Boundaries
Bayesian Estimation of Mixtures of Multivariate Bernoulli
Distributions
Miscellaneous Functions for Bioinformatics and Bayesian
Statistics
An Implementation of Rubin's (1981) Bayesian Bootstrap
Bridge Regression
Bayesian Inference on a GPU using OpenCL
Bayesian Evidence Combination
Bayesian Community Ecology Analysis
Power Calculations and Bayesian Analysis of Count Distributions
and FECRT Data using MCMC
Bayesian Analysis of Censored Regression Models Under Scale
Mixture of Skew Normal Distributions
Functions and Datasets for the book "Bayesian Data Analysis"
The Bayesian Dynamic Conditional Correlation GARCH Model
Bayesian Analysis of DSD
Graphical User Interface for bayesTFR, bayesLife and bayesPop
Tools for the Bayesian Discount Prior Function
Computation of Bayes Factors for Common Designs
Bayesian Inference for Factor Modeling
Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Scalable Rejection Sampling for Bayesian Hierarchical Models
Bayesian Analysis of Generalized Elliptical Semi-Parametric
Models and Flexible Measurement Error Models
Bayesian Modeling via Goodness of Fit
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi
Square as Hyperprior
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesian Beta regression: joint mean and precision modeling
Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Bayesian Graphical Lasso
Bayesian Network Modeling and Analysis
General-Purpose MCMC and SMC Samplers and Tools for Bayesian
Statistics
Bayesian Methods for Image Segmentation using a Potts Model
Bayesian Latent Class Analysis
Bayesian Projection of Life Expectancy
Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Logistic Regression
Bayesian Analysis of Contingency Table Data
Adjust Longitudinal Regression Models Using Bayesian Methodology
Bayesian Inference of Landscape Occupancy from Presence-Only
Data
Bayesian Inference for Marketing/Micro-Econometrics
Designing Bayesian Multi-Arm Multi-Stage Studies
Mixtures-of-Experts Markov Chain Clustering and Dirichlet
Multinomial Clustering
Default Bayesian Hypothesis Tests for Correlation, Partial
Correlation, and Mediation
Bayesian Random-Effects Meta-Analysis
Bayesian Mixture Models with JAGS
Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification
Bayesian Network Belief Propagation
BayesNI: Bayesian Testing Procedure for Noninferiority with
Binary Endpoints
Variable Selection in a Hierarchical Bayesian Model for a Hazard
Function
Hierarchical Bayesian Model for a Hazard Function
Plotting for Bayesian Models
Probabilistic Population Projection
Hierarchical Bayesian analysis of ecological count data
Bayesian Quantile Regression
Bayesian Regression Models with Continuous Shrinkage Priors
Bayes Factors for Hierarchical Linear Models with Continuous
Predictors
Bayesian Essentials with R
Bayesian Variable Selection Using Simplified Shotgun Stochastic
Search with Screening (S5)
Bayesian Analysis of Small Area Estimation
Computation of Bayes factors for interrupted time-series designs
Bayesian Spectral Analysis Techniques
MCMC Sampling of Bayesian Linear Models via Summary Statistics
Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Bayesian Fertility Projection
Bayesian thresholds mixed-effects models for categorical data
Bayesian Additive Regression Trees
Bayesian Tree Prior Simulation
Bayesian Analysis of Item-Level Twin Data
BayesValidate Package
Bayes Factors, Model Choice and Variable Selection in Linear
Models
R Utilities Accompanying the Software Package BayesX
R Package Distribution of the BayesX C++ Sources
Bayesian analysis of haplotype association using Markov Chain
Monte Carlo
R Functions for Bayesian Hazard Rate Estimation
R Package for Baylor University Educational Psychology
Quantitative Courses
Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Bayesian Analysis of Significantly Mutated Genes in Cancer
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
Miscellaneous Basic Functions
Solving and Optimizing Large-Scale Nonlinear Systems
Bayesian bandwidth estimation and semi-metric selection for the
functional kernel regression with unknown error density
Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Miscellaneous Helper Functions for B. Bischl
Tools for General Maximum Likelihood Estimation
Brownian bridge movement model
Models for Continuous Traits Evolving in Macroevolutionary
Landscapes of any Shape
Biogeography-Based Optimization
Bayesian Behavioural Capture-Recapture Models
Gene Regulatory Network Inference with Bc3net
Business and Customer Analytics
Bias-Corrected Bayesian Classification with Selected Features
Calculation of Option Prices Based on a Universal Solution
Business Cycle Dating and Plotting Tools
Diagnostics Plots for Bicluster Data
Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
Bayesian Cost Effectiveness Analysis
The Bayesian Causal Effect Estimation Algorithm
B Cell Receptor Somatic Hyper Mutation Analysis
Bayesian Models for Cost-Effectiveness Analysis in the Presence
of Structural Zero Costs
Bias-Corrected Estimates for Generalized Linear Models for
Dependent Data
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Bayesian Palaeoclimate Reconstruction from Pollen Data
Bayesian Hierarchical Clustering Using Spike and Slab Models
A Dirichlet Process Mixture Model for Clustering Longitudinal
Gene Expression Data
Map Layers and Spatial Utilities for British Columbia
Bayesian Analysis of Change Point Problems
Behavioral change point analysis of animal movement
Bayesian Multiple Changepoint Detection Using Metadata
Breast Cancer Risk Assessment
Advanced Analysis of B Cell Receptor Repertoire Data
Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Bias-Corrected Methods for Estimating the ROC Surface of
Continuous Diagnostic Tests
'Blowfish' Password Hashing Algorithm
A Bayesian Semiparametric Factor Analysis Model for Subtype
Identification (Clustering)
Cross-Validation for the SVD (Bi-Cross-Validation)
Density Estimation for Grouped Data
Bounded Density Estimation
Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Transparent and Reproducible Artificial Data Generation
Bootstrapped Differences of Time Series
Optimisation of Bayesian Decision Problems
Inference and design for predictive values in binary diagnostic
tests
Remove Weekends and Holidays from ggplot2 Axes
Routines for Block Diagonal Symmetric Matrices
Biodiversity Data Visualizations
Bayesian Inference for Discrete Weibull Regression
Bayesian Dynamical System Model
Bureau of Economic Analysis API
Biometric Exploratory Analysis Creation House
Bead filtering for Illumina bead arrays
Analysis of Illumina BeadArray SNP data including MSV markers
Visualization via Beanplots (like Boxplot/Stripchart/Violin
Plot)
Bayesian Analysis of Heterogeneous Treatment Effect
Bayesian Estimation of Change-Points in the Slope of
Multivariate Time-Series
Quantifies effects of geo/eco distance on genetic
differentiation
Extract Genotypes from a PLINK .bed File
Genomic Region Processing using Tools Such as 'BEDTools',
'BEDOPS' and 'Tabix'
Easily Play Notification Sounds on any Platform
The Bee Swarm Plot, an Alternative to Stripchart
Functions for R Beginners
Download Historical Data from the Belgrade Stock Exchange
28 benchmark densities from Berlinet/Devroye (1994)
Benchmark Experiments Toolbox
Benchmark and Frontier Analysis Using DEA and SFA
Crowd Sourced System Benchmarks
Data Set for the 'benchmarkme' Package
High Precise Measurement of R Expressions Execution Time
Benford Analysis for Data Validation and Forensic Analytics
Statistical Tests for Evaluating Conformity to Benford's Law
Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Marine Benthic Ecosystem Analysis
Benthic Ecosystem Quality Index 2
Batch Effects Removal
Bayesian Exponential Random Graph Models
Function Collection Related to Plotting and Hydrology
Best Subset Selection in Linear, Logistic and CoxPH Models
Bessel -- Bessel Functions Computations and Approximations
Bayesian Estimation Supersedes the t-Test
Best Subset GLM
Normalizing Transformation Functions
Mini Games from Adventures of Beta and Bit
Beta Calibration
Detecting rare variants for quantitative traits using nuclear
families
Beta-Diversity of Species Interactions
Partitioning Beta Diversity into Turnover and Nestedness
Components
Functions to incorporate taxonomic uncertainty on multivariate
analyses of ecological data
Beta Regression
Standardized Beta Coefficients
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH
Models
Bethel's algorithm
Brazilian Economic Time Series
Bayesian Evaluation of Variant Involvement in Mendelian Disease
Bayesian Spectral Inference for Stationary Time Series
Bezier Curve and Spline Toolkit
Bayesian Factor Analysis
Breaks For Additive Season and Trend (BFAST)
Bayesian Fractional Polynomials
A Suite of Packages for Analysis of Big Genomic Data
Binary Generalized Extreme Value Additive Models
Bayesian Genomic Linear Models Applied to GE Genome Selection
Bayesian Estimation in Generalized Linear Models
Bayesian Generalized Linear Regression
Example BGM Files for the Atlantis Ecosystem Model
Gaussian Mixture Modeling Algorithms and the Belief-Based
Mixture Modeling
Markov Beta and Gamma Processes for Modeling Hazard Rates
Block Gibbs Sampler with Incomplete Multinomial Distribution
Bayesian Group Sparse Multi-Task Regression
Boost C++ Header Files
General likelihood exploration
Useful Functions for Box, Hunter and Hunter II
Biomarker Threshold Models
Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI Data
Bias correction of the parameter estimates of the beta
regression model
Biased Urn Model Distributions
Parse a BibTeX File to a data.frame
R Wrapper for Java Implementation of BiBit
An R-Tool for Comprehensive Science Mapping Analysis
Reading Mass Spectrometric Search Results
Plot Functions for Use in Bibliometrics
Bibtex Parser
Maximal Biclique Enumeration in Bipartite Graphs
BiCluster Algorithms
Bayesian Inference for Directed Acyclic Graphs (BiDAG)
Calculates the bidimensional regression between two 2D
configurations
Tools for Accessing the Botanical Information and Ecology
Network Database
Inferences for bi- and trifactorial trial designs
Binary Choice Models with Fixed Effects
Tools for Survey Statistics in Educational Assessment
Bayesian Aggregation in Genomic Applications
BLAS routines for native R matrices and big.matrix objects
Utilities for 'big.matrix' Objects from Package 'bigmemory'
Case-Control Analysis of Multi-Allelic Loci
Fast Linear Models for Objects from the 'bigmemory' Package
Distributed Gaussian Process Calculations
Optimized Kernel Regularized Least Squares
Biochemically Intuitive Generalized Loewe Model
Scalable Least-Angle Regression and Lasso
Extending Lasso Model Fitting to Big Data
bounded memory linear and generalized linear models
Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
A shared resource interface for Bigmemory Project packages
Bindings for the BigML API
PCA, Transpose and Multicore Functionality for 'big.matrix'
Objects
Interface with Google BigQuery with Shiny Compatibility
Big Quadratic Inverse Covariance Estimation
Generalized Linear Models (GLM) for Large Data Sets
An Interface to Google's 'BigQuery' 'API'
Generalized Ridge Regression (with special advantage for p >> n
cases)
Constructing Large Systems of Structural Equations
Smoothing Splines for Large Samples
Statistical Tools for Filebacked Big Matrices
Stepwise Selection for Large Data Sets
Table, Apply, and Split Functionality for Matrix and
'big.matrix' Objects
Nonparametric Analysis of Bivariate Gap Time with Competing
Risks
Sparse Estimation of Large Time Series Models
Top Scoring Pair based methods for classification
Dimension Reduction Methods for Multivariate Time Series
Download and Aggregate Data from Public Hire Bicycle Systems
Bay Area Bike Share Trips in 2014
BInary Longitudinal Data
Contains Data of Billboard Hot 100 Songs
Create Interactive Chart with the JavaScript 'Billboard' Library
Power for SNP analyses using silver standard cases
Estimates Mixture Models for Case-Control Data
The Bimodality Index
Binarization of One-Dimensional Data
Threshold Cut Point of Probability for a Binary Classifier Model
Variable Selection for Binary Data Using the EM Algorithm
Mean and Variance Modeling of Binary Data
Fit and Predict a Gaussian Process Model with (Time-Series)
Binary Response
Binary Logic
Multi-Class Discriminant Analysis using Binary Predictors
Generation of Artificial Binary Data
Parametrized Active Bindings
An 'Rcpp' Interface to Active Bindings
Methods for Analyzing Binned Income Data
Binford's Hunter-Gatherer Data
Binary Graph Analysis Tools
Evaluation and experimental design for binomial group testing
Haar-Fisz functions for binomial data
A Binary Download Manager
Asymptotic simultaneous confidence intervals for many-to-one
comparisons of proportions
Data Generation with Binary and Continuous Non-Normal Components
Simultaneous Generation of Multivariate Binary and Normal
Variates
Binomial Confidence Intervals For Several Parameterizations
'Taxonomic' Specification and Parsing Methods
Generates binomial random numbers via the coupling from the past
algorithm
Efficient MCMC for Binomial Logit Models
Confidence Intervals and Sample Size Determination for a
Binomial Proportion under Simple Random Sampling and Pooled
Sampling
Performing diagnostics on binomial regression models
Concurrent Generation of Binary, Ordinal and Continuous Data
Cut Numeric Values into Evenly Distributed Groups
Exact Binary Sequential Designs and Analysis
Generate PDFs and CDFs from Binned Data
Data Preprocessing, Binning for Classification and Regression
Predict environmental conditions from biological observations
Biological Structure Analysis
Interactive Circular Visualization of Genomic Data using
'htmlwidgets' and 'BioCircos.js'
Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis
Biodemography Functions
Package for Community Ecology and Suitability Analysis
Multilevel Modeling of Dendroclimatical Fluctuations
An Interface for GenBank/GenPept Flat Files
Biodiversity Assessment Using Functional Tools
Process Biogas Data and Predict Biogas Production
Point Data Quality Assessment and Coordinate Conversion
BioGeography with Bayesian (and Likelihood) Evolutionary
Analysis in R Scripts
N-Gram Analysis of Biological Sequences
Explore Life Histories
Tools for Microscopy Imaging
Simulation of Dynamic Microbial Inactivation
Lightweight Biology Software Installer
Create Hyperlinks to Biological Databases and Resources
Modelling and Forecasting Biological Invasions
Utilities for the BIOM (Biological Observation Matrix) Format
Find Biomarkers in Two-Class Discrimination Problems
Genomic Data Retrieval
Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Ensemble Platform for Species Distribution Modeling
Biological and chemical data networks
Sensitivity Analysis and Optimum Experiment Design for Microbial
Inactivation
Biomarker Prognostic Enrichment Tool
BioPhysConnectoR
Visualization of Overlapping Results with Heatmap
Simulation of deterministic and stochastic biochemical reaction
networks using Petri Nets
Search and Download Papers from the bioRxiv Preprint Server
From Biological Sequences and Simulations to Correlation
Analysis
From BIOlogical Sequences to MultiDimensional Scaling
Convert a Matrix of Raw Values into Nice and Tidy Data
Tools for Electromyogram Signals (EMG) Analysis
Biomarker Selection in Penalized Regression Models
Initiation Ã  la Statistique avec R
Calculation of Freshwater Biotic Indices
Tools for Biometry and Applied Statistics in Agricultural
Science
Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
Interactive Biplots in R
BIPOD (Bayesian Inference for Partially Observed diffusions)
Connector for the Wordnik API
Methods to Analyse Ring Re-Encounter Data
MA Birk's Functions
The R Package for "The Basics of Item Response Theory Using R"
Programmatic Access to Bank for International Settlements Data
Tools to find bad commits with git bisect
Toolkit to Identify Candidate Synthetic Lethality
Bayesian Isotonic Regression with Bernstein Polynomials
Analysis of RNA Cytosine-5 Methylation
A class for vectors of 1-bit booleans
A S3 Class for Vectors of 64bit Integers
Bitwise Operations
Binarization and Trinarization of One-Dimensional Data
Bayesian Inference of Transmission Routes Using Genome Sequences
Estimating the Parameters of Some Bivariate Distributions
Sample size calculations for bivariate longitudinal data
Tolerance Intervals and Errors-in-Variables Regressions in
Method Comparison Studies
Bivariate Residual Plots with Simulation Polygons
Generation of Bivariate Uniform Data and Its Relation to
Bivariate Binary Data
Conduct Univariate and Bivariate Wavelet Analyses
Functions to compute the biweight mean vector and covariance &
correlation matrices
Business Days Calculations and Utilities
Bayesian Kernel Machine Regression
Bayesian Kernel Projection Classifier
Black Box Optimization and Exploration of Parameter Space
Blaker's Binomial Confidence Limits
Plots (Slightly Extended) Bland-Altman Plots
Bland-Altman Method Comparison
Easily Send HTML Email Messages
Send Emails Using 'Blat' for Windows
Calculate and Analyze Blau Status for (Covert) Organizations
Bayesian Latent Variable Analysis
Black-Litterman and Copula Opinion Pooling Frameworks
A New Link Function that Blends Two Specified Link Functions
Analyze biotic homogenization of landscapes
United Kingdom coastlines
Record Linkage for Empirically Motivated Priors
Data Exploration with Multiple Machine Learning Algorithms
Fitting block ERGM given the block structure on social networks
Binomial linear and linear-expit regression
Bayesian Linear Mixed-Effects Models
Data Files and Functions Accompanying the Book "Bayesian Data
Analysis in Ecology using R, BUGS and Stan"
Black-Litterman Posterior Distribution
A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Coclustering Package for Binary, Categorical, Contingency and
Continuous Data-Sets
blockmatrix: Tools to solve algebraic systems with partitioned
matrices
Creates strings that show a text message in 8 by 8 block letters
An R Package for Generalized and Classical Blockmodeling of
Valued Networks
Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Randomization for block random clinical trials
Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Two Dimensional Change-Points Detection
Block, Assign, and Diagnose Potential Interference in Randomized
Experiments
Create Blogs and Websites with R Markdown
Performs a BLP Demand Estimation
Bayesian Linear Regression
Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse
Model
Request Data from the U.S. Bureau of Labor Statistics API
An API Wrapper for the Bureau of Labor Statistics (BLS)
Bayesian Model Averaging
Multivariate Extremes: Bayesian Estimation of the Spectral
Measure
Benchmark dose analysis for dose-response data
Mediation analysis with missing data using bootstrap
Bayesian Meta-Analysis and Meta-Regression
Hybrid Trait Evolution under Brownian Motion
PCM for Hybridization
Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Bayesian Sampling for Stick-Breaking Mixtures
Bayesian Estimation for Finite Mixture of Distributions
MCMC diagnostics package
Bayesian Multilevel Mediation
Bayesian multinomial mixture
The pseudo-likelihood method for pairwise binary markov networks
Read Windows Bitmap (BMP) Images
Bundle Methods for Regularized Risk Minimization Package
Bayesian Models for Rare Variant Association Analysis
Bayesian Model Averaging Library
The BMT Distribution
Learning Discrete Bayesian Network Classifiers from Data
Data Generator based on Bayesian Network Model
Bayesian Network Structure Learning, Parameter Learning and
Inference
Bayesian Neural Network for High-Dimensional Nonlinear Variable
Selection
Bagged k-Nearest Neighbors Survival Prediction
Bayesian Estimation for Normal Heteroscedastic Nonlinear
Regression Models
Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Bayesian Nonparametric Method for Mediation
Bayesian Nonparametric Model for Clustering with Mixed Scale
Variables
Bayesian monotonic nonparametric regression
A Bayesian Nonparametric Algorithm for Time Series Clustering
Bayesian Network Structure Learning
Bayesian Non- And Semi-Parametric Model Fitting
Spatial Implementation of Bayesian Networks and Mapping
Bayesian Network Structure Learning from Data with Missing
Values
Bayesian Output Analysis Program (BOA) for MCMC
Board Games and Tools for Building Board Games
A Clustering Method Based on Boosting on Single Attributes
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a
Package for Identifying Differentially Regulated Genes in the
Light of Gene Functions
Interface to the Boilerpipe Java Library
Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Interface to Bold Systems API
Functions for Elementary Bayesian Inference
Bolstad functions
Australian Government Bureau of Meteorology Data from R
An Improved Multiple Testing Procedure for Controlling False
Discovery Rates
Authoring Books and Technical Documents with R Markdown
Generate Varied Types of Books and Documents with R 'bookdown'
Package
Boolean Binary Response Models
Optimal Estimation of Partially Observed Boolean Dynamical
Systems
Construction, Simulation and Analysis of Boolean Networks
Bayesian Object Oriented Modeling
MCMC for Spike and Slab Regression
Boosted Multivariate Trees for Longitudinal Data
A modular framework to bag or boost any estimation procedure
Optimized GWAS cohort subset selection for resequencing studies
Bootstrap Functions (Originally by Angelo Canty for S)
Bootstrapping Estimates of Clustering Stability
Bootstrap Effect Sizes
Bootstrapped Confidence Intervals for (Negative) Likelihood
Ratio Tests
Bootstrap-MRMR Technique for Informative Gene Selection
Bootstrap Methods for Various Network Estimation Routines
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Bootstrapped Response and Correlation Functions
A Bootstrap Test for the Probability of Ruin in the Classical
Risk Process
Testing equality of spectral densities
Bootstrap Subsamplings of Sparse Partial Least Squares -
Discriminant Analysis for Classification and Signature
Identification
Bootstrap stepAIC
Functions for the Book "An Introduction to the Bootstrap"
Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Bootstrap Tolerance Levels for Credit Scoring Validation
Statistics
Adjusting for Optimism in 'glmnet' Regression using
Bootstrapping
Test Stationarity using Bootstrap Wavelet Packet Tests
Bayesian Ordination and Regression AnaLysis
Wrapper Algorithm for All Relevant Feature Selection
Classical Boson Sampling
A Bunch of Structure and Sequence Analysis
Convert Binary Species Range Maps into Continuous Surfaces Based
on Distance to Range Edge
Analytic Solutions for (ground-water) Boussinesq Equation
Response Transformations for Random Effect and Variance
Component Models
Downloads Box Office Information for Given Dates (How Much Each
Movie Earned in Theaters)
Double Box Plot for Two-Axes Correlation
Interface for the 'Box.com API'
Basic Pattern Analysis
Biplot of Multivariate Data Based on Principal Components
Analysis
Beta Product Confidence Procedure for Right Censored Data
bPeaks: an intuitive peak-calling strategy to detect
transcription factor binding sites from ChIP-seq data in small
eukaryotic genomes
Bayesian Phylogeographic and Ecological Clustering
Back-Projected Kernel Density Estimation
Computations Around Bayesian Predictive Power
Bayesian QTL Mapping Toolkit
Bradley-Terry Models
Fits the Bradley-Terry Model to Potentially Large and Sparse
Networks of Comparison Data
Visualize Combined Action Response Surfaces and Report BRAID
Analyses
Fitting Dose Response with the BRAID Combined Action Model
Improved Access for Blind Users
Graph Theory Analysis of Brain MRI Data
Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging
Basic wavelet analysis of multivariate time series with a
visualisation and parametrisation using graph theory
Simulation and Estimation for Branching Processes
Test for Parallel Regression Assumption
Brazilian Maps from Different Geographic Levels
Bayesian Recurrent Event Analysis
SICM pipette tip geometry estimation
Species Richness Estimation and Modeling
Multiple Change-Point Detection and Segmentation
An R Package for Multiple Break-Point Detection via the
Cross-Entropy Method
Core Functions to Read and Fit 13c Time Series from Breath Tests
Stan-Based Fit to Gastric Emptying Curves
Functions for Wind Resource Assessment
Templating Framework for Report Generation
Bias Reduction in Binomial-Response Generalized Linear Models
Bias Reduction in Generalized Linear Models
Brier score decomposition of probabilistic forecasts for binary
events
An Implementation of the Bridge Distribution with Logit-Link as
in Wang and Louis (2003)
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Bridge Sampling for Marginal Likelihoods and Bayes Factors
Biological Risk Assessment
Bias Reduction with Missing Binary Response
Binary Regression Model
Bayesian Regression Models using Stan
Bayesian Regularization for Feed-Forward Neural Networks
Very large numbers in R
Karl Broman's R Code
Convert Statistical Analysis Objects into Tidy Data Frames
A Compression Format Optimized for the Web
Brown Dog R Interface
Bayesian Analysis of Quantile Regression Models
Bayesian Inference on the Ratio of Two Poisson Rates
Fetch 'Phylogenies' from Many Sources
Biological Relevance Testing
Interface to the 'OpenBUGS' MCMC Software
Normalisation Tools for Inter-Condition Variability of ChIP-Seq
Data
Statistical methods for safety assessment in agricultural field
trials
Bayesian State-Space Models for Animal Movement
Bayesian Spectral Analysis Models using Gaussian Process Priors
Basic Statistics and Data Analysis
Binary Search Tools
Bayesian Sparse Group Selection
Bayesian Survival Model with Lasso Shrinkage Using Generalized
Weibull Regression
Nonparametric Smoothing of the Hazard Function
Bayes Screening and Model Discrimination
Bayesian Spectral Inference
Bayesian Nonparametric Spectral Density Estimation Using
B-Spline Priors
Adds Functionality to the R Markdown + Shiny Bootstrap Framework
bspmma: Bayesian Semiparametric Models for Meta-Analysis
Bayesian Simultaneous Quantile Regression
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing
Matrix Estimates
Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Birnbaum-Saunders Model Based on Skew-Normal Distribution
Gradient Boosting
Bayesian Structural Time Series
Beyond the Border
Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Estimates Univariate Function via Bayesian Trend Filtering
Modelling Heterogeneity in Paired Comparison Data
Training and Analysing Asynchronous Boolean Models
Bayesian Time-Strat. Population Analysis
Implementing Buy 'Til You Die Models
Probabilistic Models for Assessing and Predicting your Customer
Base
Bucky's Archive for Data Analysis in the Social Sciences
Bias and Uncertainty Corrected Sample Size
Buckley-James Regression for Survival Data with High-Dimensional
Covariates
Algorithms for Matching Bullet Lands
Topic Modelling
Bullwhip Effect Demo in Shiny
Analyze Bunching in a Kink or Notch Setting
All Final Tables of the Bundesliga
Business Process Analysis in R
Fire-History Analysis in R
Burns Statistics Financial
Burns Statistics Miscellaneous
Markov model for bursty behavior in streams
Generalized Pairwise Comparisons
Bayesian Analysis of a Vector Autoregressive Model with
Stochastic Volatility and Time-Varying Parameters
A Simple alternative to proportional Venn diagrams
The Stark-Parker algorithm for bounded-variable least squares
Solvers for Boundary Value Problems of Differential Equations
Bayesian Variant Selection: Bayesian Model Uncertainty
Techniques for Genetic Association Studies
Bayesian Variable Selection in High Dimensional Settings using
Non-Local Prior
Bayesian Whole-Genome Regression
Baumgartner Weiss Schindler Test of Equal Distributions
Statistics About Bytes Contained in a File as a Circle Plot
Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Methods for Detecting Safety Signals in Clinical Trials Using
Body-Systems (System Organ Classes)
Compare Two Classifications or Clustering Solutions of Varying
Structure
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
A CanIStream.It API Wrapper
Bootstrap Confidence Regions for Correspondence Analysis
Classification Accuracy and Consistency under Item Response
Theory
Conditional Density Estimation Network Construction and
Evaluation
A Package to Perform Covariate Augmented Dickey-Fuller Unit Root
Tests
Provides a GUI to Several Statistical Methods
Encrypts and Decrypts Strings
Simulation of Plasma Caffeine Concentrations by Using Population
Pharmacokinetic Model
Conditional Akaike information criterion for lme4
R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output
Embeddable Cairo Graphics Device Driver
Comparison of Algorithms with Iterative Sample Size Estimation
Calculations for All Common Subsequences
Calculator for LR Fuzzy Numbers
Coarse Approximation Linear Function
Multiple imputation using MICE and Random Forest
Automated Parameter Estimation for Complex (Ecological) Models
Calibration of Scatterplot and Biplot Axes
Weighting and Estimation for Panel Data with Non-Response
Bayesian calibration of complex computer codes
Call R from R
Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Causal Additive Model (CAM)
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Calibrated Machine Learning
Client for CAMS Radiation Service
Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Analyses of Cancer Gene Interaction
Estimation of Temporal Ordering of Cancer Abnormalities
Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal
and Spatial Clonal Evolutionary History by Next-Generation
Sequencing
Chemical Composition of Differential Protein Expression
Directly Extracts Complete CANSIM Data Tables
Visualization Package for CanvasXpress in R
Combined Analysis of Pleiotropy and Epistasis
Comparative Analyses of Phylogenetics and Evolution in R
Companion Animal Population Management
Capital Asset Pricing for Nature
Numbers Figures and Creates Simple Captions
Client for the Captricity API
CAlibrating Penalities Using Slope HEuristics
Estimates population size from non-invasive sampling
Companion to Applied Regression
Spatial Generalised Linear Mixed Models for Areal Unit Data
Data Used in the Vignettes Accompanying the CARBayes and
CARBayesST Packages
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Estimation of the Number of Fatalities from Carcass Searches
Companion to Applied Regression Data Sets
Identification of Cardinal Dates in Ecological Time Series
Cardiovascular Safety Exposure-Response Modeling in Early-Phase
Clinical Studies
High-Dimensional Regression and CAR Score Variable Selection
Statistical package for population size estimation in
capture-recapture models
Classification and Regression Training
Ensembles of Caret Models
Continuous-Time Fractionally Integrated ARMA Process for
Irregularly Spaced Long-Memory Time Series Data
Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry
Functions for Statistics Classes at Carleton College
Ecological Quality Ratios Calculation and Plot
A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Build Common Tables of Summary Statistics for Reports
CRISPR AnalyzeR for Pooled CRISPR Screens
Reparameterized and marginalized posterior sampling for
conditional autoregressive models, OpenCL implementation
Covariate Assisted Ranking and Screening for Large-Scale
Two-Sample Inference
Create Cartograms with R
Thematic Cartography
Censored Autoregressive Model with Exogenous Covariates
Séries Temporelles Avec R
Fitting Flexible Smooth-in-Time Hazards and Risk Functions via
Logistic and Multinomial Regression
Identify Similar Cases for Qualitative Case Studies
'caret' Applications for Spatial-Temporal Models
Efficient Phylogenetics on Large Trees
Analysis of categorical-variable datasets with missing values
Test for and Identify Categorical or Continuous Values
Categorical Data Analysis Program Package
Categorical Data
Fishery Stock Assessment by Generalized Depletion Models
High Dimensional Factor Analysis and Confounder Adjusted Testing
and Estimation
Fits a Catenary to Given Points
Encoders for Categorical Variables
Categorical Variable Selection Methods
Community Assembly by Traits: Individuals and Beyond
An R Package for Simulating IRT-Based Computerized Adaptive
Tests
Chronomics Analysis Toolkit (CAT): Periodicity Analysis
Formal Psychological Models of Categorization and Learning
Case-Control and TDT Meta-Analysis Package
Categorical Bayesian Network Inference
Tools: moving window statistics, GIF, Base64, ROC AUC, etc
Optimal Categorisation of Continuous Variables in Prediction
Models
Generation of IRT Response Patterns under Computerized Adaptive
Testing
Special models for categorical variables
Computerized Adaptive Testing for Survey Research
The Cochran-Armitage Trend Test
Computation of the p-Value for the Exact Conditional
Cochran-Armitage Trend Test
Tools for Estimating Causal Dose Response Functions
Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Methods for Estimating Causal Effects from Observational Data
Estimation of Causal Effects with Generalized Additive Models
Inferring Causal Effects using Bayesian Structural Time-Series
Models
Causal Learning of Mixed Graphical Models
Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Analysis utilities for binary classification and Causata users
Correspondence Analysis Variants
Clustering for Business Analytics
Coffee Break Descriptive Analysis
Contextual Bayesian Anomaly Detection in R
Compare Baseline Characteristics Between Groups
Clustering of Multivariate Binary Data with Dimension Reduction
via L1-Regularized Likelihood Maximization
Covariate Balancing Propensity Score
Statistics Netherlands (CBS) Open Data API Client
Canonical correlation analysis
Client for 'CCAFS' 'GCM' Data
Bayesian Canonical Correlation Analysis and Group Factor
Analysis
(Robust) Canonical Correlation Analysis via Projection Pursuit
Class Cover Catch Digraphs
Developing a core collections
Cone Constrained Convex Problems
Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Combined Cluster and Discriminant Analysis
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
Continuous Counterfactual Analysis
Conditional Correlation GARCH models
Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Convex Clustering Methods and Clustering Indexes
Correlation classification method (CCM)
Compositional Mediation Model
Simulate Congruence Class Model for Networks
Significance Tests for Canonical Correlation Analysis (CCA)
One and two locus GWAS of binary phenotype with
case-control-population design
Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Tools for the Continuous Convolution Trick in Nonparametric
Estimation
Consensus Analysis, Model-Based Clustering, and Cultural
Consensus Theory Applications
Coupled-Dipole Approximation for Electromagnetic Scattering by
Three-Dimensional Clusters of Sub-Wavelength Particles
Fluid Data Transformations
Reading and Writing Constant DataBases
Retrieve 'U.S'. Flu Season Data from the 'CDC' 'FluView' Portal
Conditional Distance Correlation and Its Related Feature
Screening Method
Evaluate Differentially Private Algorithms for Publishing
Cumulative Distribution Functions
Quantile Regression for Random Variables on the Unit Interval
Statistical downscaling through CDF-transform
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and
Logistic Regression
Tools to Download and Work with USDA Cropscape Data
Cognitive Diagnosis Modeling
Components of Canadian Monetary and Credit Aggregates
R Functions to Model CDOM Spectra
Top Frequency-Based Parallel Coordinates
Phylogenetically Classifies Retention Mechanisms of Duplicate
Genes from Gene Expression Data
Constrained Dual Scaling for Detecting Response Styles
Statistical Inference of C- And D-Vine Copulas
Sampling from Conditional C- and D-Vine Copulas
Cross-Entropy Clustering
Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization
Benchmark functions for the Special Session and Competition on
Real-Parameter Single Objective Optimization at CEC-2013
Chain Event Graph
Combinatorial Efficient Global Optimization
Collection of Common Astronomical Conversion Routines and
Functions
Translate Spreadsheet Cell Ranges to Rows and Columns
One-Dimensional Cellular Automata
Functions to fit cell volume distributions and thereby estimate
cell growth rates and division times
Analyzing Data with Cellwise Outliers
Coarsened Exact Matching
Conditional Expectation Manifolds
Censored Regression with Smooth Terms
Linear Regression with a Randomly Censored Covariate
Censored Linear Mixture Regression Models
censored NID samples
Estimate Parameter of Bivariate Copula
Censored Regression (Tobit) Models
Fits Normal and Student-t Censored Regression Model
Censored Spatial Models
Scrape US Census Data
Data from the Australian Census 2016
Retrieve Data from the Census APIs
Changes United States Census Geographic Code into Name of
Location
Collect Data from the Census API
Tools to Query the 'Censys' API
Find Graph Centrality Indices
Censored time series
Cross-Entropy R Package for Optimization
Centrality-based pathway enrichment
Discriminant Analysis of Time Series in the Presence of
Within-Group Spectral Variability
Context Driven Exploratory Projection Pursuit
Busca CEPs Brasileiros
Outlier Detection Using the Iterated RMCD Method of Cerioli
(2010)
Covariance Estimation Regularized by Nuclear Norm Penalties
CET Perceptually Uniform Colour Maps
Configural Frequency Analysis (CFA)
Cause-Specific Framework for Competing-Risk Analysis
Estimate quantiles using any order Cornish-Fisher expansion
Canadian Forest Fire Danger Rating System
Compare Groups, Analytically and Graphically
Constrained Generalized Additive Model
Calculate AUC-type measure when gold standard is continuous and
the corresponding optimal linear combination of variables with
respect to it
R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Continuous Generalized Gradient Descent
Microarray CGH analysis using the Smith-Waterman algorithm
Detecting hot spot on CGH array data with fused lasso
regression
Array CGH Data Analysis and Visualization
Composite Gaussian process models
Miscellaneous Tools
Statistical Methods and Models for Claims Reserving in General
Insurance
Methods for Changepoint Detection
Methods for Nonparametric Changepoint Detection
Change-Point Estimation for Expensive and High-Dimensional
Models
Change-Points Detections for Changes in Variance
Change Point Estimation for Clustered Signals
Markov Model for the Online Multi-Channel Attribution Problem
Shiny Web Application for the Multichannel Attribution Problem
0-1 Test for Chaos
Chaos Game
Numerical Computation Cumulative Distribution Function and
Probability Density Function from Characteristic Function
Charge Transfer Rates and Charge Carrier Mobilities
Make Fake Data
Clonal Heterogeneity Analysis Tool
Canadian Historical Climate Network
Discrete Linear Chebyshev Approximation
Multivariate Chebyshev Interpolation
Check the Basic Validity of a (Function) Argument
Calculate and verify check digits
Fast and Versatile Argument Checks
Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Analysis and Visualisation of Ecological Communities
Calibration Functions for Analytical Chemistry
A Cheminformatics Modeling Laboratory for Fitting and Assessing
Machine Learning Models
Multivariate Statistical Analysis in Chemometrics
Chemometrics with R - Multivariate Data Analysis in the Natural
Sciences and Life Sciences
Exploratory Chemometrics for Spectroscopy
Multiple Testing Methods for Exploratory Research
Closest History Flow Field Forecasting for Bivariate Time Series
The Chi Distribution
Partitioning Chi-Squared and Tau Index for Three-Way Contingency
Tables
Calculating Childhood Mortality Rates
Data and Methods Around Reference Values in Pediatrics
Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Miscellaneous Tools for Chinese Text Mining and More
Toolkit of Helper Functions to Pre-Process Amplification Data
Nonparametric Methods for Identifying Differential Enrichment
Regions with ChIP-Seq Data
Coupled Hidden Markov Models
Estimation and Hypothesis Testing for Threshold Regression
Thermodynamic Calculations for Geobiochemistry
Processing Data from Lattes CV Files
Design Functions for Choice Studies
Choice Modeling in R
Amend, Augment and Aid Analysis of John Snow's Cholera Data
Choplump tests
The Chopthin Resampler
Chordalysis R Package
Estimation in Respondent Driven Samples
Simplify the Creation of Choropleth Maps in R
Contains an Administrative-Level-1 Map of the World
Contains Maps Used by the 'choroplethr' Package
Interface to Chromosome Counts Database API
Analysis of chromosomal interactions data (correction,
segmentation and comparison)
Chronological Objects which can Handle Dates and Times
Choi and Hall Style Data Sharpening
Chunkwise Text-File Processing for 'dplyr'
Isotope Ratio Meta-Analysis
Generative Models for Complex Networks with Conditionally
Independent Dyadic Structure
Estimating and Testing Direct Effects in Directed Acyclic Graphs
using Estimating Equations
Weighted summary of cumulative incidence functions
Toolbox for Connectivity Informatics Technology Initiative
('CIFTI') Files
Causal Inference for Neuroscience
Curculionidae INstar IDentification
Deciphering Central Informative Nodes in Network Analysis
Co-Information based N-Order Epistasis Detector and Visualizer
Functions to Plot Confidence Interval
Centered Isotonic Regression and Dose-Response Utilities
Circumplex models Estimation
Circular Visualization
Maximum Likelihood Analysis of Circular Data
Statistical Analysis of Circular Data using Nonnegative
Trigonometric Sums (NNTS) Models
Detection of Outliers in Circular-Circular Regression
Circular Statistics, from "Topics in circular Statistics" (2001)
Circular Statistics
Circular Drift-Diffusion Model
Choice Item Response Theory
Causal Inference Test
CITation ANalysis Toolpack
CIT Breast Cancer Molecular SubTypes Prediction
CIT Colon Cancer Molecular SubTypes Prediction
An RStudio Addin to Insert BibTex Citation in Rmarkdown
Documents
Confidence or Prediction Intervals, Quantiles, and Probabilities
for Statistical Models
'RStudio' Add-in to Insert Markdown Citations
Visualization of structure and contents of a database
Track Flows of Water Through an Urban System
R Client for the 'Civis data science API'
AMCE Estimator for Conjoint Experiments
Chris Kennedy's R Toolkit
Client for the Comprehensive Knowledge Archive Network ('CKAN')
'API'
Optimal and Fast Univariate Clustering
C++ implementations of phylogenetic cladogenesis calculations
Classical Age-Depth Modelling of Cores from Deposits
Idealisation of Patch Clamp Recordings
Time Series Modeling for Climate Change Proxies
Access to Clarifai API
Functions for Classification
Classes and Methods for "Class Comparison" Problems on
Microarrays
Classes and Methods for "Class Discovery" with Microarrays or
Proteomics
Construct Graphs of S4 Class Hierarchies
Generates a Visualization of Classifier Performance as a Grid of
Diagnostic Plots
Explore classification models in high dimensions
Classification of Functional Data
Classification Accuracy and Consistency under IRT models
Choose Univariate Class Intervals
Robust multivariate classification using highly optimised SVM
ensembles
Google's Compact Language Detector 2
Google's Compact Language Detector 3
The Critical Care Clinical Data Processing Tools
Cleaning Geometries from Spatial Objects
A Tidy Data Model for Natural Language Processing
Helps You to Code Cleaner
Simultaneous Variables Clustering and Regression
Conditioned Latin Hypercube Sampling
Helpers for Developing Command Line Interfaces
Model-Based Clustering of Categorical Sequences
Fix Data and Create Report Tables from Different Objects
Analyzes Clickstreams Based on Markov Chains
Easily Download and Visualise Climate Data from CliFlo
Censoring Data and Likelihood-Based Correlation Estimation
Climate Tools (Series Homogenization and Derived Products)
Calculate Average Minimal Depth of a Maximal Subtree for
'ranger' Package Forests
Climate Classification According to Several Indices
PCIC Implementation of Climdex Routines
Climate Downscaling Library for Daily Climate Model Output
Constrained L1-minimization for Inverse (covariance) Matrix
Estimation
Tools for Analyzing Climate Extremes
Statistical Methods for Climate Sciences
Climate Window Analysis
Simulation and Analysis Tools for Clinical Dose Response
Modeling
Clinical Trial Design and Data Analysis Functions
Summary Measures for Clinical Trials with Survival Outcomes
Clinical Pharmacokinetics Toolkit
Clinical Significance Functions
Clinical Utility of DNA Testing
Read and Write from the System Clipboard
Unicode Symbols at the R Prompt
Constrained Inference for Linear Mixed Effects Models
Boosting Conditional Logit Model
Fitting exact conditional logistic regression with lasso and
elastic net penalties
Lasso Estimation of Conditional Logistic Regression Models for
Matched Case-Control Studies
Cloud Utilization Plots
R Interface to C API of COIN-OR Clp
A smoothing Newton method SOCP solver
Central Limit Theorem Experiments (Theoretical and Simulation)
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Cluster Ensembles
Cluster Evaluation
Clustering Method Based on Local
Clustering and Visualization of Mixed-Type Data
Wilcoxon Rank Sum Test for Clustered Data
Statistical Methods for Analyzing Clustered Matched Pair Data
Clusters of Effects Curves in Quantile Regression Models
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Cluster Analysis Data Sets
Analyze Clustered Data with Generalized Linear Models using the
Cluster Bootstrap
Clustering Indices
Location and Visualization of Clustered Somatic Mutations
Explore clustering interactively using R and GGobi
Random Cluster Generation (with Specified Degree of Separation)
Identifying clusters in genomics data by recursive partitioning
Clustering Genotypes in Haplotypes
Optimal Distance-Based Clustering for Multidimensional Data with
Sequential Constraint
Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM)
Integrative Clustering for Heterogeneous Biomedical Datasets
Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Rank Tests for Clustered Data
Reproducibility of gene expression clusters
Calculate Cluster-Robust p-Values and Confidence Intervals
Searching for Optimal Clustering Procedure for a Data Set
Assessment of Stability of Individual Objects or Clusters in
Partitioning Solutions
Check the Clustering Tendency
Evaluation of Clustering Algorithms
Hierarchical Clustering with Spatial Constraints
Model Based Clustering for Mixed Data
k-Prototypes Clustering for Mixed Variable-Type Data
Variable Selection in Clustering by Mixture Models for Discrete
Data
Clustering of Variables
Easy Interface for Clustering a Set of Documents and Exploring
Group- Based Patterns
Methods for Joint Dimension Reduction and Clustering
Significant Cluster Analysis
Clustering of Variables Around Latent Variables
Variable Selection for Gaussian Model-Based Clustering
Gaussian-Based Visualization of Generic Model-Based Clustering
Cluster Validation Techniques
Validation of Clustering Results
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adaptation Evolution Strategy
Matching Algorithms for Causal Inference with Clustered Data
Cronbach-Mesbah Curve
Collective matrix factorization
Categorical Marginal Models
Computational Methods for Numerical Analysis
Control Charts for Conway-Maxwell-Poisson Distribution
Circle Manhattan Plot
Flexible Modeling of Count Processes
Subdistribution Analysis of Competing Risks
Analysis of Competing Risks Using Quantile Regressions
Misc Functions of the Center for the Mathematical Research
Tools for CM SAF NetCDF Data
The Complex Multivariate Gaussian Distribution
Causal Modeling with Coincidence Analysis
Conditional Negative Binomial Distribution
Canonical Non-Symmetrical Correspondence Analysis in R
Complex-Valued Wavelet Lifting for Signal Denoising
Complex-Valued Wavelet Lifting for Univariate and Bivariate Time
Series Analysis
Maximum Likelihood Estimation of a Log-Concave Density Function
Copy Numbers of Genes in prokaryotes
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Fast Algorithms for Frequency-Preserving Null Models in Ecology
Association Analysis of CNV Data and Imputed SNPs
Example data sets for association analysis of CNV data
A Framework for Coalescent Simulation
MCMC Algorithms for the Coalescent
A Collection of Functions to Help with Analysis of Coarsely
Observed Data
Covariate Balance Tables and Plots
Nonlinear Aggregation of Predictors
Constrained B-Splines (Sparse Matrix Based)
Copula Based Cluster Analysis
COmbat CO-Normalization Using conTrols (COCONUT)
Comparing Correlations
Extract Shared Variation in Collections of Data Sets Using
Regression Models
Co-Correspondence Analysis Methods
Statistical Comparisons of Two or more Alpha Coefficients
Output Analysis and Diagnostics for MCMC
A Basic Set of Functions for Compositional Data Analysis
Markov chain Monte Carlo burn-in based on "bridge" statistics
Automated C Code Generation for 'deSolve', 'bvpSolve' and
'Sundials'
Analysis of R Code for Reproducible Research and Code
Comprehension
Multiscale Codependence Analysis
Code Analysis Tools for R
Alternative Factor Coding Matrices for Linear Model Formulae
Community Dynamics Metrics
Robust Coefficient Alpha and Omega with Missing and Non-Normal
Data
Plots Coefficients from Fitted Models
Coenocline Simulation
Gradient-Based Coenospace Vegetation Simulator
Species coexistence modeling and analysis
Generate Cofeature Matrices
Complete Functional Regulation Analysis
Convolution of Gamma Distributions
Copula Based Imputation Method
Conditional Inference Procedures in a Permutation Test Framework
Access 'CoinDesk' Bitcoin Price Index API
Get Cryptocurrencies Market Cap Prices from Coin Market Cap
Simultaneous Confidence Interval for Multinomial Proportion
Consistent Monitoring of Stationarity and Cointegrating
Relationships
Parameter Estimation and Inference in a Cointegrating Regression
Constrained Optimization on Linear Function
Generalized CDH (GCDH) Analysis
Collapses Levels, Computes Information Value and WoE
Interactive Collapsible Tree Diagrams using 'D3.js'
Quickly and Neatly Collect Arguments from One Environment to
Pass to Another
Collocation Inference for Dynamic Systems
Collapsed Latent Position Cluster Model for Social Networks
Auxiliary Package for Package 'CollapsABEL'
Colocalisation tests of two genetic traits
Distance Metrics for Image Color Similarity
Implementation of Colored Independent Component Analysis and
Spatial Colored Independent Component Analysis
Simulate Temporally Autocorrelated Population Time Series
Plot and add custom coloring to Venn diagrams for 2-dimensional,
3-dimensional and 4-dimensional data
Colorful Hierarchical Clustering Dendrograms
Color Palettes using Colormaps Node Module
Color Palettes Generator
Optimized Rendering of Fold Changes and Confidence Values
A 'ggplot2' Extension to Visualize Two Variables per Color
Aesthetic Through Color Space Projections
Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams
Builds color tables
Color Science Methods and Data
Color Space Manipulation
Color Calculations with Emphasis on Spectral Data
Tools for colors in a Hue-Saturation-Value (HSV) color model
R Client for the COLOURlovers API
A Colour Picker Tool for Shiny and for Selecting Colours in
Plots
Colour Vision Models
Functions to Select and Rename Data
Command-Line Color Themes
Analysis of Concept Maps
A Combined Association Test for Genes using Summary Statistics
Synergy/Antagonism Analyses of Drug Combinations
combinatorics utilities
Game-Theoretic Probability Combination
Estimation of Optimal Portfolio Weights by Combining Simple
Portfolio Strategies
Combine a Vector of Correlated p-values
Construction Methods of some Series of PBIB Designs
Combinatorics Iterators
Combined Model Selection Criteria
Community climate statistics
Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Functions for Thermal Comfort Research
Computational Methods for Immune Cell-Type Subsets
Command pattern in R
Community Ecology Analyses
Print Nicely Formatted Comments for Use in Script Files
Useful libraries for building a Java based GUI under R
High Performance CommonMark and Github Markdown Rendering in R
JAR Files of the Apache Commons Mathematics Library
Extract and plot common trends from a cointegration system.
Calculate P-value for Johansen Statistics
Comparative Phylogeographic Analysis using the Community Tree
Framework
Ecological Community Correlogram
Computing Comorbidity Scores
Compare Two ROC Curves that Intersect
Creates empty plots with compact axis notation
Comparing Objects for Differences
Compare Two Correlated C Indices with Right-censored Survival
Outcome
Interface to Diverse Estimation Methods of Causal Networks
Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
Descriptive Analysis by Groups
comparison of medical forms in CDISC ODM format
Compare Output and Run Time
Correct for Verification Bias in Diagnostic Accuracy & Agreement
Multivariate likelihood ratio calculation and evaluation
Multisection Composite Distributions
Event-specific incidence rates for competing risks data
Tools for Retrieval and Storage of Functional Genomics Data
Analyzing Social Hierarchies
The Semi-Parametric Cumulative Incidence Function
Conway-Maxwell-Poisson GLM and distribution functions
Complementary Hierarchical Clustering
Composite Indicators Functions
Calculate the Proportion of Permutations in Line with an
Informative Hypothesis
Functions of Complex or Real Variable
Robust Linear Regression with Compositional Data as Covariates
Functions for actuarial scientists
Conway-Maxwell-Poisson Distribution
Conway-Maxwell Poisson (COM-Poisson) Regression
Compositional Data Analysis
Compositional Data Analysis
Estimation, Gene Selection, and Survival Prediction Based on the
Compound Covariate Method Under the Cox Model
Computing Continuous Distributions
Distribution Function of Quadratic Forms in Normal Variables
Paired Comparison Data Analysis
Composite-Likelihood Based Analysis of Random Fields
Compute Effect Sizes
Interface with the United Nations Comtrade API
Continuous Associated Kernel Estimation
Human-Friendly Text from Unknown Strings
A Very Fast 2D Concave Hull Algorithm
Pairwise Constraints Clustering
Optimisation with Continuous Convex Piecewise (Linear and
Quadratic) Functions
Concordance
Product Concordance
Concordance Regression
Approximate conditional inference for logistic and loglinear
models
Conditional Formatting in Data Frames
Parameter estimation in conditional GEE for recurrent event gap
times
Nonlinear Conditional Independence Tests
Computation of P Values and Bayes Factors for Conditioning Data
Standardized Conditions for R
Conditional Density Estimation with Neural Network Conditional
Mixtures
Conditional Multivariate Normal Distribution
Condition-Dependent Operon Predictions
Condition Number Regularized Covariance Estimation
Estimation of the Conditional Survival Function for Ordered
Multivariate Failure Time Data
Query-Driven Pipeline Execution and Query Templates
Conditional Visualization for Statistical Models
Primal or Dual Cone Projections with Routines for Constrained
Regression
Construction of factorial designs
Confidence Estimation of Environmental State Classifications
Manage Environment Specific Configuration Values
Package to Parse an INI File, Including Variable Interpolation
An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML/TOML)
Descriptive Interpretations of Confidence Intervals
Conformal Prediction for Regression and Classification
Transductive and Inductive Conformal Predictions for
Classification Problems
Sensitivity Analyses for Unmeasured Confounding in Meta-Analyses
Configural Frequencies Analysis Using Log-Linear Modeling
Estimates and Bounds for the False Discovery Proportion, by
Permutation
Downloads, Unpacks and Tidies Legislative Data from the
Brazilian Federal Senate and Chamber of Deputies
Algorithms for Fitting Circles, Ellipses and Conics Based on the
Work by Prof. Nikolai Chernov
Plot Conics
Flexible Tools for Multiple Imputation
Conjoint analysis package
A package to check the cancellation axioms of conjoint
measurement
Tools for Working with Connectivity Data
Conover-Iman Test of Multiple Comparisons Using Rank Sums
Computation of Parameters Used in Preliminary Assessment of
Conservation Status
Consonance Analysis Module
Partial Linear Least-Squares Regression using Constrained
Splines
Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Reference on Constants, Units and Uncertainty
Identify Event Sequences Using Time Series Joins
Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Model-Based Clustering and Classification with the Multivariate
Contaminated Normal Distribution
Continued Fractions
Bayesian Analysis of Contingency Tables
Contouring of Non-Regular Three-Dimensional Data
Create Contour Plots from Data or a Function
A Collection of Contrast Methods
A Control Systems Toolbox
Quantile Comparison for Two-Sample Right-Censored Survival Data
Converts dates between calendars
Finding Convergence Clubs
Seeing Convergence Concepts in Action
Convert Graphical Files Format
Convert Between Units
Analysis of Convergent Evolution
Disciplined Convex Programming in R using 'Convex.jl'
Income Concentration Analysis with Complex Survey Samples
Convolution-Based Nonstationary Spatial Modeling
Probabilistic Species Co-Occurrence Analysis in R
Co-Occurrence Network
Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Cooperative aspects of optimal trees in weighted graphs
Automated Cleaning of Occurrence Records from Biological
Collections
General Bivariate Copula Theory and Many Utility Functions
Fitting the copCAR Regression Model for Discrete Areal Data
Coverage Probability Excursion (CoPE) Sets
COPPE-Cosenza Fuzzy Hierarchy Model
Sample Size Calculation for Two Primary Time-to-Event Endpoints
in Clinical Trials
Multivariate Dependence with Copulas
Estimation and Statistical Process Control Under Copula-Based
Time Series Models
Data Sets for Copula Modeling
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Estimation of Distribution Algorithms Based on Copulas
Bivariate Copula Based Regression Models
Copula Mixed Effect Models for Bivariate and Trivariate
Meta-Analysis of Diagnostic Test Accuracy Studies
Computing Statistical Indices to Detect Answer Copying on
Multiple-Choice Tests
Co-Ranking Matrix
Collection of Rudimentary Bioinformatics Tools
Correlational Class Analysis
Generate correlated count random variables
Community Estimation in G-Models via CORD
Calculation of the OPTICS Cordillera
Cores of Recurrent Events
Programmatic Analysis of Sediment Cores Using Computed
Tomography Imaging
Multi-Purpose Core Subset Selection
Classification, Regression and Feature Evaluation
Wrappers Around Stanford CoreNLP Tools
Core Functionality for Simulating Quantities of Interest from
Generalised Linear Models
TDT for compound heterozygous and recessive models
Analysis of Binary Character Evolution
Preprocessor for Data Modeling
Record Linkage, Incorporating Imputation for Missing Agreement
Patterns, and Modeling Correlation Patterns Between Fields
The Clustering of Regression Models Method
Efficient Estimation of Covariance and (Partial) Correlation
Statistics and data sets for corpus frequency data
Corpora Co-Occurrence Comparison
Text Corpus Analysis
Managing, Querying and Analyzing Tokenized Text
Implementation of 2D Correlation Analysis in R
Nonparametrics with Clustered Binary and Multinomial Data
Correcting AUC for Measurement Error
Correct Overloaded Peaks from GC-APCI-MS Data
Linear Regression Based on Linear Structure Between Variables
Functions and Methods for Correspondence Regression
Correlated Binomial Probabilities
A collection of functions for graphing correlation matrices
Plot a Correlogram
Estimate Correlations Between Repeatedly Measured Endpoints
(E.g., Reliability) Based on Linear Mixed-Effects Models
Visualization of a Correlation Matrix
Correlations in R
CorrSieve
Modeling Correlational Magnitude Transformations in
Discretization Contexts
Arbitrary Bounding of Series and Time Series Objects
Adaptive Shrinkage of Correlation Vectors and Matrices
Tools for processing data after a Genome Wide Association Study
Cosegregation Analysis and Pedigree Simulation
COndition SpecIfic sub-NEtwork
Tools for estimating and predicting the cosinor model
Extended Tools for Cosinor Analysis of Rhythms
Functions for cosmological distances, times, luminosities, etc
Photometric redshift estimation using generalized linear models
Fit Regularized Nonparametric Regression Models Using COSSO
Penalty
Time series costationarity determination
The CosW Distribution
Consistant Cotrend Rank Selection
Connect to and Work with CouchDB Databases
Functions, Data and Code for Count Data
Estimation and Inference Methods for Counterfactual Analysis
Flexible Univariate Count Models Based on Renewal Processes
Convert Country Names and Country Codes
Mean and Variance Modeling of Count Data
Quantify United States County-Level Flood Measurements
Convert from UTC to Local Time for United States Counties
Compiles Meterological Data for U.S. Counties
A Residue-Residue Contact Detecting Method
Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Tests on Properties of Space-Time Covariance Functions
Brownian Motion Processes for 'nlme'-Models
Test for Equality of Covariance Matrices
Covfefy Any Word, Sentence or Speech
Latent Class Models with Covariate Effects on Underlying and
Measured Variables
Covariance Matrix Estimation
Test Coverage for Packages
A simultaneous regression model for the mean and covariance
Robust Covariance Estimation via Nearest Neighbor Cleaning
Model-Free Covariate Selection
Model-Free Covariate Selection in High Dimensions
Tests for Determining if the Covariance Structure of
2-Dimensional Data is Separable
Computes covariance test for adaptive linear modelling
Covariance Matrix Tests
Statistical Tools for Covariance Analysis
Performs Segmented Linear Regression on Two Independent
Variables
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Messages, Warnings, Strings with Ascii Animals
Cox models by likelihood based boosting for a single survival
endpoint or competing risks
Cox-Type Models for Interval-Censored Data
Mixed Effects Cox Models
Regularized Cox Model
Cox Regression with Firth's Penalized Likelihood
Sparse Estimation of Cox Proportional Hazards Models via
Approximated Information Criterion
Stochastic Gradient Descent log-Likelihood Estimation in Cox
Proportional Hazards Model
Weighted Estimation in Cox Regression
Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Cox Models with Dynamic Ridge Penalties
Robust Estimation in Cox Model
Fitting a CoxSEI Model
Conditional Power Calculations
Calibration Plot for Proteomics
Confirmatory Path Analysis through the d-sep tests
Bayesian Meta Analysis for Studying Cross-Phenotype Genetic
Associations
Methods to perform Common Principal Component Analysis (CPCA)
Concordance Probability Estimates in Survival Analysis
Association Between Methylation and a Phenotype of Interest
Parallelized Genomic Prediction and GWAS
CpG Filtering Method Based on Intra-Class Correlation
Coefficients
Find the maximum likelihood estimator of the shape constrained
hazard baseline and the effect parameters in the Cox
proportional hazards model
Clinical Pharmacokinetics
R Interface to C API of IBM ILOG CPLEX
Compound Poisson Linear Models
Sequential and Batch Change Detection Using Parametric and
Nonparametric Methods
Correction of the P-Value after Multiple Coding in Generalized
Linear Models
Control Polygon Reduction
The Conditional Probability Function of a Competing Event
Functions for Working with Danish CPR Numbers
Nonparametric Change Point Estimation for Survival Data
Classification Permutation Test
An Interface to the 'CPTEC/INPE' API
Quantile, Composite Quantile Regression and Regularized Versions
Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Power Calculation for Weighted Log-Rank Tests in Cure Rate
Models
Testing Differences Between Competing Risks Models and Their
Visualisations
Cosmology R Analysis Code
Probabilistic damage tolerance analysis for fatigue cracking of
metallic aerospace structures
Multivariate nonparametric Cramer-Test for the
two-sample-problem
Find Data-Only Packages on CRAN
Completing Ranks
Tools for 'CRAN'-Like Repositories
Download Logs from the 'RStudio' 'CRAN' Mirror
RStudio Addin for Searching Packages in CRAN Database Based on
Keywords
Various R tools for http://crantastic.org/
Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Colored Terminal Output
Categorical Randomized Block Data Analysis
Censored Regression with Conditional Heteroscedasticity
Clustering of Genomic Regions Analysis Method
Functions for calculating the CreditMetrics risk model
Credit Default Swaps in R
Evaluation of Credit Risk with Structural and Reduced Form
Models
Credible Subsets
Credit Default Swap Functions
Conditional Random Fields
Analyze Cricketers Based on ESPN Cricinfo Statsguru
Group-Based Modelling of Longitudinal Data
Statistical Methods for Crime Series Linkage
Fits a Model that Partitions the Covariate Space into Blocks in
a Data- Adaptive Way
Continual Reassessment Method (CRM) for Phase I Clinical Trials
Fetch 'Scholary' Full Text from 'Crossref'
CCMN and other noRMalizatioN methods for metabolomics data
Object-Oriented Implementation of CRM Designs
Downloads and Builds datasets for Climate Reference Network
Implementation Helper for [ and [<- Of Custom Matrix-Like Types
Schedule R Scripts and Processes with the 'cron' Job Scheduler
Graphics Cropping Tool
Open Data of Agricultural Production of Crops of Peru
A Partial Clustering Algorithm with Automatic Estimation of the
Number of Clusters and Identification of Outliers
Construction of Crossover Designs
The Cross-match Test
Analysis and Search of Crossover Designs
Confidence intervals for crossover points of two simple
regression lines
Cross-Screening in Observational Studies that Test Many
Hypotheses
Inter-Widget Interactivity for HTML Widgets
Verbal Autopsy Data Transform for Use with Various Coding
Algorithms
Generic Functions for Cross Validation
Classes and Methods for Cross Validation of "Class Prediction"
Algorithms
Rename and Encode Data Frames Using External Crosswalk Files
CreditRisk+ Portfolio Model
A 'dplyr' Interface for Crunch
Cross-Recurrence Quantification Analysis for Categorical and
Continuous Time-Series
Penalized Variable Selection in Competing Risks Regression
Competing risks regression for Stratified and Clustered data
Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
Categorical Regression Splines
Diagnostics for Fine and Gray Model
Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'
Classification and Regression Tests
Doubly Robust Inverse Probability Weighted Augmented GEE
Estimator
Sample Size Estimation Functions for Cluster Randomized Trials
HTTP Client
Crunch.io Data Tools
Shiny Apps on Crunch
Interface to Climatic Research Unit Time-Series Version 3.21
Data
Identifying cryptic relatedness in genetic association studies
Cryptocurrency Market Data
Statistical Tests for Cryptographic Randomness
Calculate the Relative Crystallinity of Starch by XRD and FTIR
Bounds on Distributional Treatment Effect Parameters
Functions for Conditional Simulation in Regression-Scale Models
Testing for Change in C-Statistic
Bayesian Nonparametric Modeling in R
Covariate-adjusted Skewed Functional Model (cSFM)
The CShapes Dataset and Utilities
Closed Skew-Normal Distribution
Correlates of State Policy Data Set in R
Methods to Test Hypotheses on the Distribution of Spatial Point
Processes
csSAM - cell-specific Significance Analysis of Microarrays
Cognitive Social Structure Tools
Selection of Number of Clusters via Normalized Clustering
Instability
Substantive significance testing for regression estimates and
marginal effects
Read and Write CSV Files with Selected Conventions
Fast Specialized CSV File Loader
Import and Export CSV Data with a YAML Metadata Header
Continuous Threshold Expectile Regression
Correlated Trait Locus (CTL) Mapping in R
A Text Mining Toolkit for Chinese Document
Estimating the Parameters of a Continuous-Time Markov Chain from
Discrete-Time Data
Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Collaborative Targeted Maximum Likelihood Estimation
Continuous-Time Movement Modeling
Censored and Truncated Quantile Regression
Continuous Time Autoregressive Models
Continuous Time Structural Equation Modelling
Classical Test Theory Functions
Classical Test Theory via Shiny
CRAN Task Views
A Class of Mixture Models for Ordinal Data
Adaptive Multivariate Integration over Hypercubes
Codon Usage Bias Fits
Rubik's Cube Solving
Rule- And Instance-Based Regression Modeling
MultiDimensional Feature Selection (MDFS)
CUDA Parallel Implementation of a Bayesian Multilevel Model for
fMRI Data Analysis
Data sets for the examples used in the package "cudaBayesreg"
CUDIA Cross-level Imputation
Charles's Utility Function using Formula
Analyze Multivariate Phenotypes by Combining Univariate Results
Extends ddply to allow calculation of cumulative quantities
Change point detection in genomic sequences
Cumulative Descriptive Statistics
A Modern and Flexible Web Client for R
Estimation of CCI and CLFS Functions
Partial Function Application with %<%, %-<%, and %><%
Confidence Intervals for the Current Status Model
Multiple Curve Comparisons Using Parametric Bootstrap
The package will formally test two curves represented by
discrete data sets to be statistically equal or not when the
errors of the two curves were assumed either equal or not using
the tube formula to calculate the tail probabilities
Filtering of Flow Cytometry Samples
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Compute Decision Interval and Average Run Length for CUSUM
Charts
CUTOFF: A Spatio-temporal Imputation Method
An R package to perform LPUE standardization and stock
assessment of the English Channel cuttlefish stock using a
two-stage biomass model
Cross-Validated Area Under the ROC Curve Confidence Intervals
Estimation of the Calibration Equation with Error-in
Observations
Efficient Design and Analysis of Cluster Randomized Trials
Color Vision Deficiencies
Tests for the Equality of Coefficients of Variation from
Multiple Groups
Penalized Logistic Regression Model using Majorization
Minimization by Coordinate Descent (MMCD) Algorithm
Calculate the predictive squared correlation coefficient
Canonical Variate Regression
Fast Cross-Validation via Sequential Testing
Level-Dependent Cross-Validation Thresholding
Cross-validation tools for regression models
Regularized Estimators of Covariance Matrices with CV Tuning
Convex Biclustering Algorithm
Splitting methods for convex clustering
Disciplined Convex Optimization
Miscellaneous Functions for Math, Plotting, Printing,
Statistics, Strings, and Tools
Cluster Weighted Models by EM algorithm
extend cxxfunction by saving the dynamic shared objects
Tools for Cycling Data Analysis
Cyclomatic Complexity of R Code
cycloids
Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Query 'Team Cymru' 'IP' Address, Autonomous System Number
('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware'
Hash Data Services
Cycle and Phase Identification for mastication data
Agent-Based Model for Taenia_solium Transmission and Control
Cytobank API Wrapper for R
Computes Signaling and Population Stats for Cytometry Data on
Cytobank using 'CytobankAPI'
Bridging and Extending the CytobankAPI Package in R to the
Cytobank Web Application
Cytometric diversity indices
Automated Cytometry Gating and Annotation
Methods for Image-Based Cell Profiling
Predicting Causal Direction from Dependency Features
Interactive Genome Browser with R
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
Two Sample Test with Wasserstein Metric
Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Interactive Charts of Nested and Hierarchical Data with 'D3.js'
Seamless 'D3Plus' Integration
'd3.js' Utilities for R
Create Interactive Collapsible Trees with the JavaScript 'D3'
Library
Data Analysis and Graphics Data and Functions
Data Sets and Functions, for Demonstrations with Expression
Arrays and Gene Sequences
Data Sets and Functions, supplementary to DAAG
Calculating Data Agreement Criterion Scores to Rank Experts
Based on Their Beliefs
Three-Way Data Analysis Through Densities
Functions Useful in the Design and ANOVA of Experiments
Design and Analysis of Experiments with R
Diff, Patch and Merge for Data.frames
Data analysis for forensic scientists
Learning directed acyclic graphs (DAGs) through bootstrap
aggregating
Consensus genetic maps
Graphical Analysis of Structural Causal Models
R functions for directed acyclic graphs
Diagnostic accuracy of classification models
Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
Data Analysis and Knowledge Spaces
The DALY Calculator - Graphical User Interface for Probabilistic
DALY Calculation in R
Data Analysis Metabolomics
Neural Network Numerai
Dave Armstrong's Miscellaneous Functions
Dynamic Assembly Model of Colonization, Local Extinction and
Speciation
Dams in the United States from the National Inventory of Dams
(NID)
Dandelion Plot for R-Mode Exploratory Factor Analysis
Package for Deep Architectures and Restricted Boltzmann Machines
The Analysis of Dark Adaptation Data
Tools to Work with the 'Dark Sky' 'API'
Importing and Analysing Snp and Silicodart Data Generated by
Genome-Wide Restriction Fragment Analysis
Statistical Tools to Analyze Your Darts Game
Interactive Data Visualization with D3.js
Tools for Reading, Processing and Writing 'DSSAT' Files
Tools for Data Manipulation
Extension of `data.frame`
General Purpose Hierarchical Data Structure
Functions and Add-Ins for Working with 'data.world' Data Sets
and Projects
Wrapper for TC/Govdata360 API
File-Based Access to Large Matrices Stored on HDD in Binary
Format
Swarm Intelligence for Self-Organized Clustering
Tools for Checking Data Consistency
Data Checking
Data Cleaning
Tools for Easily Combining and Cleaning Data Sets
Compare Two Data Frames and Summarise the Difference
R Client for 'Datadog' API
Divide and Recombine for Large, Complex Data
Make it Easier to Enter Questionnaire Data
Data Explorer
Write Data Frames to Xls Files
Estimating Finite State Machine Models from Data
Export Data from R so DataGraph can Read it
Import Multiple File Types
A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Screening Process
A system for mapping foreign objects to R variables and
environments
Unified access to your data sources
Create and Append a Data Dictionary for an R Dataset
Easily Source Publicly Available Data on Derivatives
R Interface to the DataONE REST API
A Flexible Container to Transport and Manipulate Data and
Associated Resources
R Tools for Data Copy-Pasta
Automated Data Preparation
Performs variable level data quality checks and generates
summary statistics
Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
DataRobot Predictive Modeling API
Datasets from the Datasaurus Dozen
Switzerland's Data Series in One Place
Interface for Loading Datasets
Tools to Complete Euclidean Distance Matrices
Data Assimilation
An Implementation of a SAS-Style Data Step
Implementation of Core Data Structures
An Interface to DATASUS System
Timestamps and Advanced Plotting
Client for Dataverse 4 Repositories
Data and Workspace Browser for Terminals
Functions for Handling Dates
Nominal Dates, Times, and Durations
Utilities for Dates and Times
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
Interface to the 'Datorama' API
Functions for "Data Analysis in Vegetation Ecology"
The Davies Quantile Function
Discriminant Analysis with Additional Information
Discrete Bayesian Additive Regression Trees Sampler
Provides a graphical user interface to connect with databases
that use MySQL
Goodness-of-fit and two sample comparison tests using sample
entropy
Test for joint assessment of normality
Detecting Breakpoints and Estimating Segments in Trend
A Tool to Ensure the Validity of Database Writes
methods of distance-based gene set functional enrichment
analysis
'DBHYDRO' Hydrologic and Water Quality Data
R Database Interface
Testing 'DBI' Back Ends
Discrete Beta Kernel Graduation of Mortality Data
Compute the NPMLE of distribution from doubly censored data
Discrete Boosting Logistic Regression
Distance-Based Measures of Spatial Structures
Simplifies Plotting Data Inside Databases
A 'dplyr' Back End for Databases
Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Distance-Based Statistics
Inferring Condition-Specific Networks via Differential Network
Inference
Dynamic Correlation Analysis for High Dimensional Data
Analyzing Dichotomous Choice Contingent Valuation Data
Differential Community Detection in Paired Biological Networks
A Package for Image Analysis of DCE-MRI (S4 Implementation)
Data Cloud Geometry (DCG): Using Random Walks to Find Community
Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Analysis of Ontologies and Protein Domain Annotations
Methods for Reading dChip Files
Claims Reserving under the Double Chain Ladder Model
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Model-Based Detection of Disease Clusters
Data Converter Module
Information Matrix for Diagnostic Classification Models
Hierarchical Models Made Easy with Data Cloning
Modify Data Using Externally Defined Modification Rules
Attribute profile estimation using Diagnostic Classification
Models and MCMC
List Linear n-Peptide Constraints for Overlapping Protein
Regions
Distance Covariance and Correlation for Time Series Analysis
Conventional Cross-validation statistics for climate-growth
model
Depth-Based Classification and Calculation of Data Depth
Diversity-Dependent Diversification
Wrapper for the Duke Deploy REST API
Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
DDI with R
Death Registration Coverage Estimation
Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Distributed Data Structures in R
Learning Principal Graphs with DDRTree
Data Driven Smooth Tests
Statistical Deadband Algorithms Comparison
Learning Bayesian Networks with Mixed Variables
Deconvolution density estimation with adaptive methods for a
variable prone to measurement error
Bayesian Inference for Differential Equations
MVB's debugger for R
Debug R Packages
DEComposition of Indirect and Direct Effects
Statistical Decision Analysis
Quantitative Support of Decision Making under Uncertainty
Differential Co-Expression and Differential Expression Analysis
Decode Coded Variables to Plain Text and the Other Way Around
Time Series Prediction with PSF and Decomposition Methods (EMD
and EEMD)
Global-Value-Chain Decomposition
Deconvolution Estimation in Measurement Error Models
Identifies Signatures Present in a Tumor Sample
Empirical Bayes Estimation Strategies
Fit and Deploy DECORATE Trees
A Data Analysis GUI for R
Additional dialogs and functions for Deducer
Deducer Plug-in Example
Reliability and factor analysis plugin
Deducer for spatial data analysis
Add Survival Dialogue to Deducer
Deducer GUI for Text Data
Deductive Correction, Deductive Imputation, and Deterministic
Correction
Data Correction and Imputation Using Deductive Methods
Deep Boosting Ensemble Modeling
deep learning toolkit in R
Dirichlet-multinomial Evolutionary Event Profile Randomization
(DEEPR) test
Change the Default Arguments in R Functions
Create FDA-Style Data and Program Definitions
Integration of One-Dimensional Functions with Double Exponential
Formulas
A Tool for Standardizing Amphibian Taxonomy
Detection of differentially expressed genes
Parameter Inference for Systems of Differential Equation
Models for Skewed Count Distributions Relevant to Networks
Detection of Isotope Pattern of a Mass Spectrometric Measurement
Multiple Imputation for Recurrent Events
Statistical Functions for the Delaporte Distribution
Sample Size and Power Calculations using the APPLE and SEPPLE
Methods
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Estimates Pseudotimes for Single Cell Expression Data
Estimation of Multivariate Densities Using Adaptive Partitions
Measure of Agreement Between Two Raters
Identification of dichotomous differential item functioning
(DIF) using Angoff's Delta Plot method
Calculation of Delta R Values
Functions to Calculate Relatedness on Diploid Genetic Data
Evaluating the genetic differentiation between populations based
on Gst and D values
Differential Expression from Multiple Indicators
Deming, Thiel-Sen and Passing-Bablock Regression
Analysis of Age-Structured Demographic Models
Forecasting Mortality, Fertility, Migration and Population Data
Kernel Density Estimation for Demonstration Purposes
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using
Test Set
Extending 'Dendrogram' Functionality in R
Extra Functions to Cut, Label and Colour Dendrogram Clusters
Analyzing Dendrometer Data
A Set of Tools for Calculating Spatial Synchrony Between
Tree-Ring Chronologies
Linear and Nonlinear Methods for Analyzing Dendroclimatological
Data
Dendrogram seriation: ordering for visualisation
Modular Leaf Ordering Methods for Dendrogram Nodes
Parameter Estimates and Real-Time Prediction of a Single Dengue
Outbreak
Differential Expression Analysis Using a Bottom-Up Model
Regularized Low Rank Matrix Estimation
Statistical Analyses of De Novo Genetic Variants
Visualization of Multivariate Functions, Sets, and Data
Functional Linear Mixed Models for Densely Sampled Data
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for
density estimation
Clustering by Fast Search and Find of Density Peaks
Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
Density Ratio Estimation
Density strips and other methods for compactly illustrating
distributions
Global Optimization by Differential Evolution
Differential Evolution Optimization in Pure R
Statistical Inference for Parametric and Semiparametric Models
Based on Dependently Truncated Data
Deconvolute Mixed Genomes with Unknown Proportions
Dependent Mixture Models
Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Nonparametric Depth Functions for Multivariate Analysis
Multivariate Analogy of Quantiles
Statistical Depth Functions for Multivariate Analysis
Depth Tools Package
Stacks, Queues, and 'Deques' for R
Symbolic Differentiation
Functions and R Code to Accompany Derivatives Markets
Discrete Event Simulation
Manipulate DESCRIPTION Files
Seasonal Adjustment by Frequency Analysis
Descriptive Statistics
An Interface to the DescribeDisplay GGobi Plugin
Describe Data in R Using Common Descriptive Statistics
Descriptive Statistics OpenBudgets.eu
Generate Descriptive Statistics & Explore Statistical
Distributions
Produce Descriptive and Comparative Tables Easily
Tools for Descriptive Statistics
Some Functions to be Used as Shortcuts in 'RStudio'
Optimal deseasonalization for geophysical time series using AR
fitting
Computational tool for designing genetical genomics experiments
Finding Optimal Block Designs for a Generalised Linear Mixed
Model
Matched Samples that are Balanced and Representative by Design
Desirability Functions for Ranking, Selecting, and Integrating
Data
Function Optimization and Ranking via Desirability Functions
Desirability functions in R
Bagging with Distance-based Regression for Differential Gene
Expression Analyses
Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Plotting Field Plans for Agricultural Experiments
Analyzing Wildlife Data with Detection Error
Detect Data Containing Personally Identifiable Information
Test Set for Differential Equations
Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Suite of Deterministic and Robust Algorithms for Linear
Regression
Start the detrendeR Graphical User Interface (GUI)
Detrend Images
A computer program to detect markers responding to selection
Compare Detrital Zircon Suites
EMF Graphics Output Device
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Tools to Make Developing R Packages Easier
Data Management and Analysis of Tests
Convert a dataframe to JSON
Phase I/II Adaptive Dose-Finding Design for Combination Studies
Compare Two Dataframes and Return Adds, Changes, and Deletes
Dose-finding by the continual reassessment method
Explore data.frames by plotting NA and classes of each variable
Differential Functioning of Items and Tests
Phase I/II Adaptive Dose-Finding Design for MTA
Derivative-Free Optimization
Decision Forest
Extrapolation and Bridging of Adult Information in Early Phase
Dose-Finding Paediatrics Studies
Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for
Phase I Clinical Trials
Capture-Recapture Estimation using Bayesian Model Averaging
Genetic Algorithm with Incomplete Dominance for Feature
Selection
Differential Gene Correlation Analysis
Discrete Global Grids for R
Differential Geometric Least Angle Regression
Double Generalized Linear Models
Simulating Data for PLS Mode B Structural Models
Dynamic Estimation of Group-Level Opinion
Data for the 'dgo' Package
Discrete Goodness-of-Fit Tests
Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models
Differential Hub Gene Analysis
Double Hierarchical Generalized Linear Models
Independence Testing via Hilbert Schmidt Independence Criterion
Deficit Index (DI)
Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Block Diagonal Extraction or Replacement
Functions for Visualising Simple Graphs (Networks), Plotting
Flow Diagrams
Graph/Network Visualization
Export DiagrammeR Graphviz Graphs as SVG
Diallel Analysis with R
Beads Summary Plot of Ranges
Calculate probabilities of various dice-rolling events
Designs of Computer Experiments
Construction and Evaluation of Metamodels
Kriging Methods for Computer Experiments
Kriging-Based Optimization for Computer Experiments
Diverse Cluster Ensemble in R
Plot Methods for Computer Experiments Design and Surrogate
Color Schemes for Dichromats
Dictionaries for reading microdata surveys from IBGE
A Simple Implementation and Demonstration of Gradient Boosting
Bibliographic Network Analysis
Compute Recency Frequency Monetary Scores for your Customer Data
Metrics for Continuous Efficiency
Defines some physical constants and dielectric functions
commonly used in optics, plasmonics
R Interface to the ZEIT ONLINE Content API
Detection of Differential Item Functioning (DIF) in Rasch Models
by Boosting Techniques
Differential Coexpressed Networks
Analyzing and Visualizing Differential Correlation Networks in
Biological Data
Calculates Confidence Intervals for two Dependent Proportions
Functions from the book Solving Differential Equations in R
Metrics of Difference for Comparing Pairs of Maps
Diffusion IRT Models for Response and Response Time Data
Detecting Gene Probes with Different Means or Variances Between
Two Groups
Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model
Detection of Statistically Significant Changes in Complex
Biological Networks
Diffs for R Objects
Easy Differential Privacy
Display Differences Between Two Files using Codediff Library
Baseline identification and peak decomposition for x-ray
diffractograms
Projects for Text Version Comparison and Analytics in R
Visualization for 'diffrprojects'
Forecast the Diffusion of New Products
Diffusion map
Inference and Analysis for Generalized Quadratic Diffusions
Inference and Analysis for Diffusion Processes via Data
Imputation and Method of Lines
Inference and Analysis for Jump Generalized Quadratic Diffusions
Network Diffusion Algorithms
A Penalty Approach to Differential Item Functioning in Rasch
Models
Detection of Differential Item Functioning (DIF) and
Differential Distractor Functioning (DDF) by Non-Linear
Regression Models
Collection of Methods to Detect Dichotomous Differential Item
Functioning (DIF)
Item Focused Trees for the Identification of Items in
Differential Item Functioning
Create Compact Hash Digests of R Objects
An application programming interface for generating null models
of social contacts based on individuals' space use
Estimate Copy Number for Digital PCR
Use Data from Published Plots in R
Data-Informed Link Strength. Combine multiple-relationship
networks into a single weighted network. Impute (fill-in)
missing network links
DIME (Differential Identification using Mixture Ensemble)
A Framework for Dimensionality Reduction
Bayesian Estimation of DINA Model
DiNAMIC A Method To Analyze Recurrent DNA Copy Number
Aberrations in Tumors
Hartigan's Dip Test Statistic for Unimodality - Corrected
Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior
Directed Weighted Clustering Coefficient
Directional Statistics
Direct Labels for Multicolor Plots
Direction Analysis for Pathways and Kinases
Adjusted Means and Proportions by Direct Standardisation
Dirichlet Regression in R
Directional Metropolis Hastings Algorithm
Estimation in Dirichlet-Multinomial distribution
Discrete associated kernel estimators
Discourse API Client
Discrete Laplace Exponential Family
Discrete Laplace Mixture Inference using the EM Algorithm
Discordance and Concordance of Transcriptomic Responses
Functions for Discordant Kinship Modeling
Coordinate-Descent Algorithm for Learning Sparse Discrete
Bayesian Networks
Discrete Inverse Weibull Distribution
Discrete Laplace Distributions
Multiple testing procedures for discrete test statistics
Create and Manipulate Discrete Random Variables
Discrete Weibull Distributions (Type 1 and 3)
Data preprocessing, discretization for classification
Discrimination of Alternative Reproductive Tactics (ARTs)
Tools of the Trade for Discriminant Analysis
Discrete Time Survival Analysis
Modelling Spatial Variation in Disease Risk for Areal Data
Estimate the Gene Expression Levels and Component Proportions of
the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor
Samples
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
A Pipeline to Analyze Resistance and Tolerance from Drug Disk
Diffusion Assays
Species Distribution Modeling
2D Hausdorff and Simplex Dispersion Orderings
Disparity Filter Algorithm for Weighted Networks
displayHTS
Dispersion models
Create Disposable R Packages for Testing
Spatial Downscaling using the Dissever Algorithm
Utilities for making pairwise comparisons of multivariate data
Distance Sampling Detection Function and Abundance Estimation
Calculates Study Size Required for Distance Sampling
Tools for Distance Metrics
DiSTATIS Three Way Metric Multidimensional Scaling
Computations over Distributed Data without Aggregation
Discrete Distribution Approximations
Download Occurrence Data of Vascular Plants in Germany from the
FLORKART Database
Distribution-free confidence region (distfree.cr)
Method Functions for Confidence Intervals and to Distill
Information from an Object
Distance Between Phylogenetic Histories
Object Oriented Implementation of Distributions
Documentation for 'distr' Family of R Packages
S4 Classes for Elliptically Contoured Distributions
Extensions of Package 'distr'
Four Essential Functions for Statistical Distributions Analysis:
A New Functional Approach
Distribution Utilities
Object Oriented Implementation of Probability Models
Distributed Multinomial Regression
Estimate and Manage Empirical Distributions
Distribution Classes for Distributions from Rmetrics
Simulation Classes Based on Package 'distr'
Extensions of Package 'distr' for Teaching
Stochastics/Statistics in Secondary School
Estimation and Testing Classes Based on Package 'distr'
Provides tools for quality checks of georeferenced plant species
accessions
Diversity Estimator
Dive Analysis and Calibration
Diversity Measures for Complex Systems
Comparative 'Phylogenetic' Analyses of Diversification
A Comprehensive, General Purpose Population Genetics Analysis
Package
Building Diversity Models from Multiple Species Occupancy Models
Functions for re-sampling a community matrix to compute
diversity indices at different sampling levels
Get Images Out of DICOM Format Quickly
HRM Diversity Assay Analysis Tool
Tools for Analysis of Diversity and Similarity in Biological
Systems
Nearest Neighbour Contingency Table Analysis
Distance Measure Based Judgment and Learning
Diffusion Kernels on a Set of Genotypes
Time Series Regression Models with Distributed Lag Models
Implementation of Adaptive or Non-Adaptive Differentiable Lasso
and SCAD Penalties in Linear Models
Allow Access to the 'Dlib' C++ Library
Bayesian and Likelihood Analysis of Dynamic Linear Models
Detection Localization Mapping for QTL
Generalized Dynamic Linear Modeler
Data-Limited Methods Toolkit
Distributed Lag Non-Linear Models
Distributed-Lag Linear Structural Equation Models
Download Stats of R Packages
Dynamic Model Averaging
Distance Metric Learning in R
Dyadic Mixed Model for Pedigree Data
Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
Dynamic Modeling and Parameter Estimation in ODE Models
Delete or Merge Regressors for linear model selection
DMR Detection by Non-Homogeneous Hidden Markov Model from
Methylation Array Data
Delete or Merge Regressors Algorithms for Linear and Logistic
Model Selection and High-Dimensional Data
Dependency Modeling Toolkit
Mutate Data Frames with Random Variates
Functions and data for "Data Mining with R"
Functions and Data for the Second Edition of "Data Mining with
R"
Differential Network Analysis
Generating and Testing DNA Sequences
Tools for Analysing Forensic Genetic DNA Data
Dynamic Network Clustering
Distribution and Equation
Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology
Estimating Differential Networks under Semiparametric Gaussian
Graphical Models
Distributions and Gradients
Differential Network Local Consistency Analysis
Discriminant Non-Negative Matrix Factorization
Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains
Data from the GLM Book by Dobson and Barnett
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Wraps Docker Python SDK
Command-Line Interface Specification Language
Optimal Designs for Copula Models
Provides Docstring Capabilities to R Functions
Automatic Documentation for R packages
Run 'roxygen2' on (Chunks of) Single Code Files
Connect to 'DocuSign' API
Tools for R Markdown to Docx Documents
Extract Data Tables and Comments from Microsoft Word Documents
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Distances on Directed Graphs
Detection of Differential Rhythmicity
Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Creation of Arrays by Mixed Integer Programming
Wrapper Package for Design of Experiments Functionality
Rare Variant Association Test Based on Position Density
Estimation
A Universal Foreach Parallel Adaptor using the Future API of the
'future' Package
Foreach Parallel Adaptor for 'parallel'
ADI (Average Dominance Index), Social Network Graphs with Dual
Directions, and Music Notation Graph
R Console Bindings for the 'Domino Command-Line Client'
Foreach Parallel Adaptor for the Rmpi Package
Foreach Parallel Adaptor for the 'parallel' Package
Foreach parallel adapter for the rredis package
Generic Reproducible Parallel Backend for 'foreach' Loops
Planning and Analyzing Dose Finding Experiments
Foreach Parallel Adaptor for the 'snow' Package
Multivariate Dose-Response Meta-Analysis
Compute Statistics Helper Functions
Render and Export DOT Graphs in R
Distribution of Typicality Coefficients
Enhanced Foreign Function Interface Supporting Long Vectors
Load Environment Variables from '.env'
Dot-and-Whisker Plots of Regression Results
Survivor Function Estimation for Doubly Interval-Censored
Failure Time Data
Test Against Parametric Regression Function
Differential Exon Usage Test for RNA-Seq Data via Empirical
Bayes Shrinkage of the Dispersion Parameter
Kernel Hazard Estimation with Best One-Sided and Double
One-Sided Cross-Validation
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's
Book Measuring Market Risk
Download Files over HTTP and HTTPS
Downscaling Species Occupancy
A Tool to Downsize Large Workflows for Testing
Dynamic Path Approach
Port of 'Dparser' Package
Dirichlet Process Beta-Binomial Mixture
Digital PCR Analysis
Primal Graphical Lasso
Distribution Pitting
Dendrochronology Program Library in R
Concordance for Dendroclimatology
A Grammar of Data Manipulation
RStudio Addin for Teaching and Learning Data Manipulation Using
'dplyr'
Dirichlet Process Mixture model simulation for clustering and
image segmentation
Data Package Manager for R
Inference of Parameters of Normal Distributions from a Mixture
of Normals
Bayesian Nonparametric Modeling in R
Data Pre-Processing and Visualization Functions for
Classification
Print Tabular Data to Graphics Device
Methods for Dimension Reduction for Regression
Dose Response Data Analysis using the 4 Parameter Logistic (4PL)
Model
Data Frames in R for Make
'Drat' R Archive Template
Visualising R syntax through graphics
Discriminative Random Walk with Restart
Data Representation: Bayesian Approach That's Sparse
Analysis of Dose-Response Curves
Regularized Estimation of Dynamic Linear Regression in the
Presence of Autocorrelated Residuals (DREGAR)
Dose-Response Data Evaluation
Doubly Robust Generalized Estimating Equations
Drift Correcting Water Quality Data
R Driver for Apache Drill
Imputing Dropout Events in Single-Cell RNA-Sequencing Data
Discontinuous Regression and Image Processing
Multiplex Immunoassays Data Analysis
Regression and association models for repeated categorical data
Dual Empirical Likelihood Inference under Density Ratio Models
in the Presence of Multiple Samples
Analyze Drop Out of an Experiment or Survey
Dimensionality Reduction via Regression
Dose-Response Modeling with Smoothing Splines
Doubly-Robust Nonparametric Estimation and Inference
Implementation of a Machine Learning Framework for Predicting
Drugs Side Effects
Descriptive Statistics
Dynamical Systems Approach to Infectious Disease Epidemiology
Discretization-Based Direct Random Sample Generation
Bayesian subgroup analysis in clinical trials
Dynamic Systems Estimation (Time Series Package)
Distributed Storage and List
Data Science Labs
Dynamic Slicing
Density Surface Modelling of Distance Sampling Data
A Language to Facilitate Simulation and Visualization of
Two-Dimensional Dynamical Systems
Spatial Modelling for Distance Sampling Data
Tests and Confidence Intervals on Directly Standardized Rates
for Several Methods
Distance Sampling Simulations
Using Dempster-Shafer Theory
Analyze Two Choice Reaction Time Data with the D*M Method
Recursive Partitioning for Discrete-Time Survival Trees
Direct Surrogate Variable Analysis
Exploring Disease Similarity in Terms of Dysfunctional
Regulatory Mechanisms
A Wrapper of the JavaScript Library 'DataTables'
Simplifying Descriptive Frequencies and Statistics
Cell Type Deconvolution from Gene Expressions
Comparison of Binary Diagnostic Tests in a Paired Study Design
Doubly truncated data analysis
Analysis of Diffusion Weighted Imaging (DWI) Data
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes
Suite of functions related to discrete-time discrete-state
Markov Chains
Data Table Back-End for 'dplyr'
Estimation and Comparison of Dynamic Treatment Regimes
Decision Trees
Learning Algorithms for Dynamic Treatment Regimes
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and
Q-Learning
Discrete Trigonometric Transforms
Dynamic Time Warping Algorithms
Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis
Dual Scaling Analysis of Multiple Choice Data
Simple Client for the DuckDuckGo Instant Answer API
Create dummy/indicator variables flexibly and efficiently
Automatic Creation of Dummies with Support for Predictive
Modeling
Dunn's Test of Multiple Comparisons Using Rank Sums
Software implementation of step-down and step-up Dunnett test
procedures
Bayesian inference from count data using discrete uniform priors
Discrete variations of a fractional Brownian motion
Analyze Dose-Volume Histograms and Check Constraints
Faster Computation of Common Statistics and Miscellaneous
Functions
Access to Dataverse 3 APIs
A Client for 'data.world' REST API
Degree Weighted Lasso
Parametric Regression for Discrete Response
Dyadic Network Analysis
Interface to 'Dygraphs' Interactive Time Series Charting Library
Did You Mean?
Time Series Regression
Dynamically visualized probability distributions and their
moments
dynamicGraph
Dynamic Hazard Models using State Space Models
Methods for Detection of Clusters in Hierarchical Clustering
Dendrograms
Implementation of the Dynamic TOPMODEL Hydrological Model
Dynamic Trees for Learning and Design
Full Interactive GUI for Dynamic Biplot in R
Denoising and clustering for dynamical image sequence (2D or
3D)+T
Complexity of Short and Coarse-Grained Time Series
Dynamic Correlation Package
Resisting Neighbor Label Attack in a Dynamic Network
Fitting Dynamic Frailty Models with the EM Algorithm
Fit Dynamic Intervention Model
Dynamic Linear Regression
Dynamic Nomograms for Linear, Generalized Linear and
Proportional Hazard Models
Fast Fourier Transform to Identify Associations Between Time
Course Omics Data
Dynamic Panel Data Models
Companion Package to "Dynamic Prediction in Clinical Survival
Analysis"
Dynamic Modeling in R
Dynamic Range Boxes
Dynamic Stochastic Block Models
Dynamic Simulations of Autoregressive Relationships
Dynamic Models for Survival Data
Methods for Estimating Optimal Dynamic Treatment Regimes
Functions for Dyadic Sequence Analyses
Estimation and Prediction of Skewed Spatial Processes
Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Plots of the Empirical Attainment Function
Multiple Locus Association Mapping on a Genome-Wide Scale
Estimator Augmentation and Simulation-Based Inference
Dynamic Web-Based Analytics for the Energy Industry
Estimation of Transmissibility in the Early Stages of a Disease
Outbreak
Early Warning Signals Toolbox for Detecting Critical Transitions
in Timeseries
Multivariate Adaptive Regression Splines
Derive a Color Palette from a Particular Location on Earth
Efficient Approximate Bayesian Computation Sampling Schemes
Analytic Hierarchy Process (AHP)
Analysis of Variance and Other Important Complementary Analyses
Load Multiple 'csv' and 'txt' Tables
An Easy Way to Descriptive Analysis
Tools for Building R Formats
EasyHTMLReport
Utility functions for working with mark-recapture data
Easily Build and Evaluate Machine Learning Models
Easy Model-Builder Functions for 'OpenMx'
Tools to Easily Read/Write NetCDF Files into/from
Multidimensional R Arrays
Easy Nonlinear Model
Easy Loading and Installing of Packages
Sample Size Estimation for Experimental Designs
Search and Retrieve Scientific Publication Records from PubMed
Easy Regression
Easy Interface to the Statistical Disclosure Control Package
'sdcTable'
Evaluation of stratified genome-wide association meta-analysis
results
An Easy SVG Basic Elements Generator
Ensemble Forecast Verification for Large Data Sets
Elimination-by-Aspects Models
Entropy reweighting to create balanced samples
Sample Size Calculation Method for Cost-Effectiveness Studies
Based on Expected Value of Perfect Information
Empirical Bayes Thresholding and Related Methods
Empirical Bayes Estimation of Dynamic Bayesian Networks
Empirical Bayesian Elastic Net
Genotyping and SNP Detection using Next Generation Sequencing
Data
Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
EBI Metagenomics Portal
Ensemble BMA Forecasting
Ensemble-Based Methods for Class Imbalance Problem
Empirical Bayes Ranking
Exact Bayesian Segmentation
Genotyping and SNP calling using single-sample next generation
sequencing data
Programmatic Access to the European Central Bank's Statistical
Data Warehouse (SDW)
Simulation from Endpoint-Conditioned Continuous Time Markov
Chains
Elliptic Lambda Distribution and Option Pricing Model
Data Sets for Econometrics
Empirical CDF for Heavy Tailed Data
Functions for Spatial Point Pattern Analysis
Equal Covariance Functions Testing by L2-Norm and Sup-Norm
Functions for Ecdat
Embedding Interactive Charts Generated with ECharts Library into
Shiny Applications
Echogram Visualisation and Analysis
Efficient calculation of fine structure isotope patterns via
Fourier transforms of simplex-based elemental models
Environment Based Clustering for Interpretable Predictive Models
in High Dimensional Data
Build Error Correction Models
Ecological Inference in 2x2 Tables
Dissimilarity-Based Functions for Ecological Analysis
Programmatic Interface to the Web Service Methods Provided by UC
Berkeley's Natural History Data
Management and Exploratory Analysis of Spatial Data in Landscape
Genetics
Ecohydrological Modelling
A community modeling foundation for Eco-Hydrology
Ecological Indicators
"A practical guide to ecological modelling - using R as a
simulation platform"
Coalescent-Based Simulation of Ecological Communities
General Analysis of Various Economics Demand Systems
Null Model Analysis for Ecological Networks
Ecological Regression using Aggregate and Individual Data
An R Interface to Brazilian Central Bank and Sidra APIs and the
IPEA Data
Toolbox for Aquatic Ecosystem Modeling
Null Model Analysis for Ecological Data
Embedded Conic Solver in R
Simulating Community Assembly and Ecological Diversification
Using Ecospace Frameworks
Spatial Ecology Miscellaneous Methods
Analysis of Ecotoxicology
Methods for Ecotoxicology
EcoTroph R package
Procedures for Ecological Assessment of Surface Waters
Simulation of Ecological Models
Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Evolutionary Computation in R
Exploratory Data Analysis using Random Forests
Economic Design of Control Charts
Edge Detection and Clustering in Images
Exploratory and Descriptive Event-Based Data Analysis
Email Data Extraction Using R
Maximum Entropy Sampling
Read Data from European Data Format (EDF and EDF+) Files
Estimating Discrimination Factors
Reading EDF(+) and BDF(+) Files
Creating Empirical Distribution Functions
Platform for EDGAR Filing Management
SEC Filings Access
Circle Plot with Bundled Edges
Spatial Edge Correction
More Powerful Unconditional Testing of Negative Binomial Means
for Digital Gene Expression Data
Network Reconstruction and Changepoint Detection
'RStudio' Addin for Editing a 'data.frame'
Simultaneous Edit-Imputation for Continuous Microdata
Parsing, Applying, and Manipulating Data Cleaning Rules
Dynamic Model Averaging with Grid Search
Empirical Data Platform Client
Estimation of the Effective Dimension Reduction ('EDR') Space
Provides Tools for Dimension Reduction Methods
Stan Models for Item Response Theory
Education Survey
Compute and Decompose Inequality in Education
Exploring Election and Census Highly Informative Data Nationally
for Australia
Analysing Education Trials
Toolkit for Electroencephalography Data
Data for package eegkit
Extended Empirical Likelihood
Read and Preprocess Fluorescence Excitation-Emission Matrix
(EEM) Data
Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Convenience Functions for Education Data
Simulate and Evaluate Time Series for Environmental Epidemiology
Utility Functions for Exploratory Factor Analysis
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
Bayesian Effect Fusion for Categorical Predictors
Average and Conditional Effects
Effect Displays for Linear, Generalized Linear, and Other Models
Test changes of a grouped response relative to baseline
Visualization of Categorical Response Models
Effect Stars
Prediction of Therapeutic Success
Efficient Initials for Computing the Maximal Eigenpair
The Causal Effects for a Causal Loglinear Model
Efficient Effect Size Computation
Read European Eddy Fluxes CSV Files
Tool for Ensemble Feature Selection
Error Grid Analysis
Engle-Granger Cointegration Models
Extensions for 'ggplot2', to Align Plots, and Set Panel Sizes
Hierarchical Modelling of Faecal Egg Counts
Tool for ego-centric measures in Social Network Analysis
Exploration and Graphics for RivEr Trends (EGRET)
Exploration and Graphics for RivEr Trends (EGRET) Confidence
Intervals
Event History Analysis
Extended HOF (Huisman-Olff-Fresco) Models
Electronic Health Record (EHR) Data Processing and Analysis Tool
Ecological Inference
R Wrapper for the Energy Information Administration (EIA) API
Compares EI, Goodman, RxC Estimates
Generates (dense) matrices that have a given set of eigenvalues
Semiparametric factor and regression models for symmetric
relational data
Computes confidence intervals for principal components
Efficient Inference of Local Ancestry
eiPack: Ecological Inference and Higher-Dimension Data
Management
An algorithm for reducing errors-in-variable bias in simple
linear regression
Ecological Inference with individual and aggregate data
MCMC Procedures for Estimating Enzyme Kinetics Constants
Two-sample Empirical Likelihood
Empirical Likelihood (EL) for Comparing Two Survival Functions
Enhanced Least Absolute Shrinkage and Selection Operator
Regression Model
Replicar metodologia de SPE/MF para calculo de elasticidade de
receita
General Purpose Interface to 'Elasticsearch'
Ising Network Estimation using Elastic Net and k-Fold
Cross-Validation
Elastic-Net for Sparse Estimation and Sparse PCA
A Lightweight Interface for Interacting with Elasticsearch from
R
Collection of functions for statistical election audits
Functions for election audits using stratified random samples
R Functions to Download and Clean Brazilian Electoral Data
Allocating Seats Methods and Party System Scores
A Set of R6 Classes & a Shiny Application for Reducing Elemental
LA-ICPMS Data from Solid Structures
Data Sets, Functions and Examples from the Book: "The Elements
of Statistical Learning, Data Mining, Inference, and
Prediction" by Trevor Hastie, Robert Tibshirani and Jerome
Friedman
Access Elevation Data from Various APIs
Load Associated Press Election Results with Elex
Sampling from a Empirical Likelihood Bayesian Posterior of
Parameters Using Hamiltonian Monte Carlo
Ellipse Summary Plot of Quantiles
Functions for Drawing Ellipses and Ellipse-Like Confidence
Regions
Elliptic Functions
Implementation of ELM (Extreme Learning Machine ) algorithm for
SLFN ( Single Hidden Layer Feedforward Neural Networks )
Extreme Machine Learning (ELM)
Extreme Learning Machine for Survival Analysis
Model-Based Gene Clustering for Genomics Data from
Paired/Matched Designs
Elo Ratings
Preference Rating for Visual Stimuli Based on Elo Ratings
Animal Dominance Hierarchies by Elo Rating
Exact Logistic Regression via MCMC
Elston-Stewart Algorithm
Experience Life Tables
Empirical Likelihood Analysis for the Cox Model and
Yang-Prentice (2005) Model
Easy Microarray Data Analysis
Data Management Tools for Real-Time Monitoring/Ecological
Momentary Assessment Data
Expectation-Maximization Binary Clustering
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Evolutionary Monte Carlo (EMC) algorithm
Computation and Visualization of Empirical Joint Distribution
(Empirical Joint CDF)
EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Empirical Mode Decomposition and Hilbert Spectral Analysis
Support Functions and Data for "Ecological Models and Data"
Estimating and Mapping Disaggregated Indicators
Earth Mover's Distance
Exponentially Modified Gaussian (EMG) Distribution
Evaluation of Modeling without Information Leakage
EM Algorithms for Estimating Item Response Theory Models
Estimation of Wastewater Emissions in Combined Sewer Systems
Read and Write Ecological Metadata Language Files
Fitting log-Linear Models in Sparse Contingency Tables
Evolutionary model-based multiresponse approach
End-Member Modelling of Grain-Size Data
Read and Write to an EMME/2 databank
Estimated Marginal Means, aka Least-Squares Means
Contrasts in Mixed Effects for EMMIX Model with Random Effects 2
Fitting Mixtures of CFUST Distributions
The EM Algorithm and Skew Mixture Distribution
Fitting Unrestricted Multivariate Skew t Mixture Models
A Maximum Likelihood Approach to the Analysis of Modularity
Fitting Mixed Models with Known Covariance Structures
Evolutionary Multiobjective Optimization Algorithms
Emoji and Font Awesome in Graphics
Tools for Environmental and Ecological Survey Design
Eye Movement Analysis Package for Fixation and Saccade Detection
Expected Maximum Profit Classification Performance Measure
Routines for Performing Empirical Calibration of Observational
Study Estimates
Simulation-Based False Discovery Rate in RNA-Seq
Empirical Likelihood Ratio for Censored/Truncated Data
Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Epimed Solutions Collection for Data Editing, Analysis, and
Benchmarking of Health Units
The Analysis of Variance with EMS
Extended Multiplicative Signal Correction
Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate data
Bayesian emulation of computer programs
Main Package of the EMU Speech Database Management System
Entropy Minimization over Variable Clusters
Tools for Ecological Network Analysis
Portable Tools for 'UTF-8' Character Data
Represent Ordered Lists and Pairs as Strings
Classical Simultaneous Equation Models
R Package for Fitting Multinomial Probit Models with Endogenous
Selection
Bayesian Measurement Models for Analyzing Endorsement
Experiments
Transmissions and Receptions in an End to End Network
E-Statistics: Multivariate Inference via the Energy of Data
Distribution Free Multivariate Control Chart Based on Energy
Test
Data Published by the United States Federal Energy Regulatory
Commission
Translate Integers into English
Data sets from "Introductory Statistics for Engineering
Experimentation"
English and European Soccer Results 1871-2016
Client for the 'Enigma' 'API'
Ecological Niche in R and GRASS
Automated Runs and Evaluations of Ecological Niche Models
Neuwirth miscellaneous
Ensemble Partial Least Squares Regression
A package dedicated to questionnaires
Provides an R Interface to 'Enrichr'
Enrichment assessment of virtual screening approaches
Methods to Enrich R Objects with Extra Components
Clustering of Categorical Data
Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Extensible Package for Cross-Validation-Based Integration of
Base Learners
Ensembling Regularized Linear Models
Ensemble Model Output Statistics
Extensible Package for Principal-Component-Regression-Based
Heterogeneous Ensemble Meta-Learning
Extensible Classes and Methods for Penalized-Regression-Based
Integration of Base Learners
Ensemble Postprocessing Data Sets
Ensemble Models in R
Ensure Values at Runtime
Entropy Partitioning to Measure Diversity
Estimation of Entropy, Mutual Information and Related Quantities
Estimation of Entropy and Related Quantities
Tools for Exploring Differential Shannon Entropy, Differential
Coefficient of Variation and Differential Expression
Detection of Structural Changes in Climate and Environment Time
Series
Document the R Working Environment
Various Utilities for Microbial Genomics and Metagenomics
GC/LC-MS Data Analysis for Environmental Science
Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Peak Picking for High Resolution Mass Spectrometry Data
Generation of ENVIREM Variables
Environmental Probabilistic Risk Assessment Tools
Statistical Analysis of Environmental Space-Time Processes
Enveloping the Aster Model
Niche Estimation
Package for Environmental Statistics, Including US EPA Guidance
Easy Plots
Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Call 'EPANET' Functions to Simulate Pipe Networks
Read Epanet Files into R
Ensemble Penalized Cox Regression for Survival Prediction
Gaussian Approximation of Bayesian Binary Regression Models
A Package for Statistical Analysis in Epidemiology
Elementary Epidemiological Functions for Epidemiology and
Biostatistics
Implements Hierarchical Bayesian Models for Epidemiological
Applications
Handling, Visualisation and Analysis of Epidemiological Contacts
Epidemiological Tool for Contact Tracing
Plot an Epidemic Curve
Tools to Retrieve Economic Policy Institute Data Library
Extracts
Epidemiological Data Display Package
Dynamic Models in Epidemiology
EpiEstim: a package to estimate time varying reproduction
numbers from epidemic curves
Flexible Modelling Functions for Epidemiological Data Analysis
Spatial and Network Based Individual Level Models for Epidemics
Continuous Time Distance-Based and Network-Based Individual
Level Models for Epidemics
Mathematical Modeling of Infectious Disease
Epidemic/Network-Related Tools
Tools for the Analysis of Epidemiological Data
Basic Sensitivity Analysis of Epidemiological Results
Rothman's Episheet
Estimation with Penalisation in Systems of Ordinary Differential
Equations
Density Estimation with Soft Information by Exponential
Epi-splines
Detecting Epistatic Selection with Partially Observed Genotype
Data
Tools for Epidemiologists
Constructing an Epistemic Model for the Games with Two Players
Flexible Contingency Tables for Epidemiology
Create HTML Tables in the Style Used in Epidemiological Papers
Epidemiology Tools
Small Helpers and Tricks for Epidemics Analysis
Conversion Between Epidemiological Weeks and Calendar Dates
Plotting longitudinal series
Apply a Function Over Expressions
EPoC (Endogenous Perturbation analysis of Cancer)
Easy Polynomial Regression
Import 'Epidata' XML Files '.epx'
Extended-Quasi-Likelihood-Function (EQL)
EQS Output Conversion to lavaan Functions
Tools for analyzing eQTL experiments: A complementary to Karl
Broman's 'qtl' package for genome-wide analysis
Examine Measurement Invariance via Equivalence Testing and
Projection Method
Observed-Score Linking and Equating
IRT Equating Methods
Equating of Multiple Forms
Provides Tests and Graphics for Assessing Tests of Equivalence
Testing for Equivalence and Noninferiority
Estimate Directed and Undirected Graphical Models and Construct
Networks
Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Nonparametric Multiple Expectile Regression via ER-Boost
Fitting Tails by the Empirical Residual Coefficient of Variation
Empirical Research in Economics with R
Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
ERG Modeling Based on Graphlet Properties
Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
User-specified terms for the statnet suite of packages
Local Health Department network data set
Extended Rasch Modeling
Significance Analysis of Event-Related Potentials Data
Event-Related Potential (ERP) Data Exploration Made Easy
Event-related potentials (ERP) analysis, graphics and utility
functions
Builds Error Intervals
Function Errorizer
Locate Errors with Validation Rules
Error Propagation for R Vectors
Edge Selection
Estimate Number of Latent Factors and Factor Matrix for Factor
Analysis
Extended Empirical Saddlepoint Density Approximation
Effect Size Computation for Meta Analysis
ESEA: Discovering the Dysregulated Pathways based on Edge Set
Enrichment Analysis
ESG - A package for asset projection
Toolkit for the simulation of financial assets and interest
rates models
Shrinkage for Effect Estimation
Ensemble of Subset of K-Nearest Neighbours Classifiers for
Classification and Class Membership Probability Estimation
Misc Functions of Eduard Szöcs
Data Preparation During and After the Use of the Experience
Sampling Methodology (ESM)
Joint Quantile and Expected Shortfall Regression
Download Data from the European Social Survey on the Fly
R Interface to e-Stat API
Calibrating Parameters for the Samejima's Continuous IRT Model
Efficient Sequential Testing with Evidence Ratios
Estimation of Heritability in High Dimensional Sparse Linear
Mixed Models using Variable Selection
Tools for Assessing Estimability of Linear Predictions
Perform the Joint Graphical Lasso and Selects Tuning Parameters
Estimates Output
Estimation of Production Functions
Estimation and Simulation for PDMPs
Visualization and Estimation of Effect Sizes
Easy Table
Modeling Earthquake Data Using ETAS Model
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Equivalence to control
Interaction with the 'Ethereum' Blockchain
Ethnicity Annotation from Whole Exome Sequencing Data
Extract-Transform-Load Framework for Medium Data
Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
Empirical Transition Matrix
Epistasis Test in Meta-Analysis
Computes Moments of Univariate Truncated t Distribution
Client for 'etcd', a 'Key-value' Database
eulerian: A package to find eulerian paths from graphs
Area-Proportional Euler and Venn Diagrams with Circles or
Ellipses
R Interface to the Europe PubMed Central RESTful Web Service
Historical Populations of European Cities, 1500-1800
Bayesian Single Arm Sample Size Calculation Software
Tools for Eurostat Open Data
Extreme Value Analysis with Goodness-of-Fit Testing
Dynamic Systems Estimation - Extensions
Parsing and Evaluation Tools that Provide More Details than the
Default
Collection of Model Evaluation Measure Functions
Information Security Quantified Risk Assessment Toolkit
Sensitivity Analyses for Unmeasured Confounding in Observational
Studies and Meta-Analyses
Modelling Actual, Potential and Reference Crop
Evapotranspiration
Evidential Distance-Based Classification
Evidential Clustering
Evidence Combination in R
Functions for Extreme Value Distributions
Bayesian Analysis in Extreme Value Theory
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Event History Procedures and Models
Event Data Repository
Sequential Event Interval Analysis
Store and manipulate event data
Event Study Analysis
Event Study Analysis
Reporting Tools for Sensitivity Analysis of Evidence Factors in
Observational Studies
Extreme Values in R
Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Comparative and Population Genetic Analyses
Tools for Evolutionary Quantitative Genetics
Important Concepts of Evolutionary Game Theory
Calculation of Evolvability Parameters
Evolutionary Morphometric Simulation
Evolutionary Parameter Estimation for 'Repast Simphony' Models
Evolutionary Rates Across Gradients
Mean of order p, peaks over random threshold Hill and high
quantile estimates
Evolutionary Learning of Globally Optimal Trees
Edgeworth Expansion
Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Escalation with Overdose Control
Unconditional Exact Test
Exact Tests and Confidence Intervals for 2x2 Tables
Exact P-Values and Matching Confidence Intervals for Simple
Discrete Parametric Cases
Inductive Confidence Intervals for the difference between two
proportions
Monte Carlo Exact Tests for Log-linear models
Exact fixed effect meta analysis
Exact solution paths for regularized LASSO regressions with L_1
penalty
Exact Distributions for Rank and Permutation Tests
Help for Writing Unit Tests Based on Function Examples
Automatic Generation of Exams in R
Confidence regions for exceedance sets and contour lines
Convenient Data Exchange with Microsoft Excel
Excerpt Structuring Comments from Your Code File and Set a Table
of Contents
Excess Mass Calculation and Plots
Interactive Exploration of Contour Data
Excursion Sets and Contour Credibility Regions for Random Fields
Read EXIF Metadata from JPEGs
EXIF Image Data in R
Calls Copy Number Variants from Targeted Sequence Data
Convert Gene EXPression Data to FBA FLUXes
Feature Matrix Builder
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
Modular Differential Evolution for Experimenting with Operators
Experimental Designs package
Pacote Experimental Designs (Portuguese)
Expectile and Quantile Regression
experiment: R package for designing and analyzing randomized
experiments
Modeling without data using expert opinion
Exponential Integral and Incomplete Gamma Function
Explanation of Predictions for Classification and Regression
Models
Interactive Interfaces for Results Exploration
Tools for Quickly Exploring Data
Matrix Exponential, Log, 'etc'
Expokit in R
Exploratory analysis with the singular value decomposition
Calculate density dependent likelihood of a phylogenetic tree
Spatial analysis of extra-pair paternity
Experiment Repetitions
Rapid Deployment of Machine Learning Algorithms
Data Sets from "Forecasting with Exponential Smoothing"
Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Tests for Exponentiality
Fast, Reliable and Elegant Reproducible Research
Extreme Regression of Quantiles
Convenience Functions for Botanists to Create Specimens Indices
Extending the Range of Functions for Probability Distributions
Data Manipulation Extensions of 'Dplyr' and 'Tidyr'
Constructs the Exterior Match from Two Matched Control Groups
Additional Funnel Plot Augmentations
Maximum penalized likelihood estimation with extended lasso
penalty
Extra-binomial approach for pooled sequencing data
Categorical Data Analysis and Visualization
Additional Univariate and Multivariate Distributions
Tools for using fonts
Package for holding the database for the extrafont package
Extremely Randomized Trees (ExtraTrees) Method for
Classification and Regression
Extreme Bounds Analysis (EBA)
Estimation of Extreme Conditional Quantiles and Probabilities
Extreme Value Analysis
Extreme Value Statistics and Quantile Estimation
Univariate Outlier Detection
Estimation of Extreme Value Dependence for Time Series Data
Estimate Lower Extreme Quantile with the Censored Weibull MLE
and Censored Weibull Mixture
Load Raw Data from Eyelink Eye Trackers
Eyetracking Helper Functions
Eye-Tracking Data Analysis
Easy Analysis and Visualization of Factorial Experiments
Easy Interface to Effective Concentration Calculations
selects significant non-additive interaction between two
variables using fast GLM implementation
Avoid the Typical Working Directory Pain When Using 'knitr'
provide an easy to use framework to conduct simulation
Generate Data Summary in a Tidy Format
FAB Confidence Intervals
Fast Covariance Estimation for Sparse Functional Data
Access to Facebook API V2 via a Set of S4 Classes
Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment
Factor Mixture Analysis with covariates
Maximum Likelihood Factor Analysis
Combination of Factorial Methods and Cluster Analysis
Extract and Visualize the Results of Multivariate Data Analyses
Automatic Description of Factorial Analysis
Multivariate Exploratory Data Analysis and Data Mining
Factorial Optimal Designs for Two-Colour cDNA Microarray
Experiments
Simultaneous Change-Point and Factor Analysis
Machine Learning with Higher-Order Factorization Machines
Hierarchical Algorithm for Post-Hoc Testing
Graphical Presentation of Simple Contrasts
Bayesian quantile regression factor models
Identification of the Factors Affecting Species Richness
Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Scores the FACT and FACIT Family of Patient-Reported Outcome
Measures
thin wrapper for the Factual.com server API
Variable Selection for Supervised Classification in High
Dimension
Distributions that are Sometimes Used in Hydrology
Data from the Book "Multivariate Statistical Modelling Based on
Generalized Linear Models", First Edition, by Ludwig Fahrmeir
and Gerhard Tutz
File Abstraction Interface Layer (FAIL)
Faisal Conjoint Model: A New Approach to Conjoint Analysis
Mock the Unix Make Utility
Simulates Data from a Data Frame of Different Variable Types
Finding Allele-Specific Copy Number in Next-Generation
Sequencing Data
Finding Allele-Specific Copy Number in Whole-Exome Sequencing
Data
From 'Familias' to R
Interface for FAME Time Series Database
Family Age-at-Onset Data Simulation and Penetrance Estimation
Probabilities for Pedigrees Given DNA Data
A Convex Formulation for Modeling Interactions with Strong
Heredity
Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
Family Sequence Kernel Association Test for Rare and Common
Variants
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data
Penalized Likelihood Factor Analysis via Nonconvex Penalty
Nonparametric Analysis of Covariance
A Fancy Version of 'base::cut'
Building Kriging Models from FANOVA Graphs
Visualisation of Sequential Probability Distributions Using Fan
Charts
Download Data from the FAOSTAT Database of the Food and
Agricultural Organization (FAO) of the United Nations
Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Modelization for Functional AutoRegressive Processes
Functions and Datasets for Books by Julian Faraway
A Faster 'ARFF' File Reader and Writer
Rmetrics - Modelling ARMA Time Series Processes
Factor Adjusted Robust Multiple Testing
Translate integers into persian
Rmetrics - EBM and Asian Option Valuation
A Fast and Scalable Joint Estimator for Learning Multiple
Related Sparse Gaussian Graphical Models
Rmetrics - Analysing and Modelling Financial Assets
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
a Fast Implementation of Adaboost
Fast Estimation of a Covariance Matrix by Banding the Cholesky
Factor
A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector
Fast Hierarchical Clustering Routines for R and Python
Significant Interval Discovery with Categorical Covariates
Lasso and Elastic-Net Penalized Cox's Regression in High
Dimensions Models using the Cocktail Algorithm
Fast, Low Memory-Footprint Digests of R Objects
Fast Creation of Dummy (Binary) Columns and Rows from
Categorical Variables
Raster Image Processing and Vector Recognition
Fast Rcpp implementation of Gauss-Hermite quadrature
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Fast Drawing and Shading of Graphs of Statistical Distributions
Robust Algorithm for Principal Component Analysis
Hierarchical Independent Component Analysis: a Multi-Scale
Sparse Non-Orthogonal Data-Driven Basis
FastICA Algorithms to Perform ICA and Projection Pursuit
Learn from Training Data then Quickly Fill in Missing Data
Efficient Jonckheere-Terpstra Test Statistics for Robust Machine
Learning and Genome-Wide Association Studies
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Fast k-Nearest Neighbors
Fast Probabilistic Record Linkage with Missing Data
Fast Computation of Multivariate M-estimators
Fast match() function
Large-Scale Social Network Analysis
FastPCS Robust Fit of Multivariate Location and Scatter
Fast Pseudo Observations
Quality Control of Sequencing Data
Foundations and Applications of Statistics Using R
Foundations and Applications of Statistics Using R (2nd Edition)
Fits the FastRCS Robust Multivariable Linear Regression Model
'fastText' Wrapper for Text Classification and Word
Representation
Fast Interactive Framework for Web Scripting Using R
Fast Structural Filtering
Fast Calculation of Spillover Measures
An Interface to the 'fastText' Library
Fast Utility Function for Time Parsing and Conversion
Two-Locus Family-Based Association Test with Polytomic Outcome
Quantification of Fate Bias in Multipotent Progenitors
Kiener Distributions and Fat Tails in Finance
HTTP Error Helpers
A Dataset of Favourite Numbers
Functions and Datasets for "Forest Analytics with R"
An Extensible Approach to Flux Balance Analysis
Rmetrics - Markets and Basic Statistics
Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Algorithm for Searching the Space of Gaussian Directed Acyclic
Graph Models Through Moment Fractional Bayes Factors
FISH Based Normalization and Copy Number inference of SNP
microarray data
Rmetrics - Pricing and Evaluating Bonds
Analyzing and Managing Facebook Ads from R
Association Football (Soccer) Ranking via Poisson Regression
Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Fused Community Detection
Basics of Certificates and Structured Products Valuation
Fatigue Crack Growth in Reliability
Change Point Analysis in Functional Data
Fuzzy Clustering
Inference of Fuzzy Cognitive Maps (FCMs)
Fuzzy Cognitive Mapping
Fast Compressed Neural Networks for R
Rmetrics - Bivariate Dependence Structures with Copulae
A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
The Ultimate Helper for Clumsy Fingers
Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Functional Data Analysis
Functional Data Analysis and Utilities for Statistical Computing
Functional Data Analysis for Density Functions by Transformation
to a Hilbert Space
Functional Data Analysis: K-Mean Alignment
Functional Data Analysis in a Mixed Model Framework
Analysis of Variance for Univariate and Multivariate Functional
Data
Functional Data Analysis and Empirical Dynamics
Functional Data Analysis and Partial Differential Equations;
Statistical Analysis of Functional and Spatial Data, Based on
Regression with Partial Differential Regularizations
Elastic Functional Data Analysis
Interval Testing Procedure for Functional Data
Boosting Functional Regression Models
Analysis of Covariance Operators
Multivariate Dependence with FDG Copulas
Dynamic Model Averaging and Dynamic Model Selection for
Continuous Outcomes
Forest Data Quality
Permutation-Based FDR Point and Confidence Interval Estimation
False Discovery Rate Procedures Under Discrete and Heterogeneous
Null Distributions
False discovery rate regression
Compute Sample Size that Meets Requirements for Average Power
and FDR
FDR-Control in Multiscale Change-Point Segmentation
Estimation of (Local) False Discovery Rates and Higher Criticism
Functional data sets
Frequency Distribution Tables, Histograms and Polygons
Scores Features for Feature Selection
R Bindings to the Feather 'API'
Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Creates a Model Matrix via Feature Hashing with a Formula
Interface
Feature Extraction for Discretely-Sampled Functional Data
Some Helper Functions that Help Create Features from Data
Fechnerian Scaling of Discrete Object Sets
Fishing Effort Calculator in R
Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Client Package for the U.S. Federal Register API
Interface to Federal 'RePORTER' API
Analysis of Feedback in Time Series
Read RSS/Atom Feeds from R
Using Fence Methods for Model Selection
Fixed Effects Nonlinear Maximum Likelihood Models
Estimation and Fit Assessment of Frailty Exponential Random
Graph Models
Fermi Large Area Telescope Catalogs
Calculate Wind Fetch
Rmetrics - Pricing and Evaluating Exotic Option
fExpressCertificates - Structured Products Valuation for
ExpressCertificates/Autocallables
Rmetrics - Modelling Extreme Events in Finance
memory-efficient storage of large data on disk and fast access
functions
Basic Statistical Functions for Package 'ff'
Freedom from Disease
Force field simulation for a set of points
Fifty-fifty MANOVA
Forgetting Factor Methods for Change Detection in Streaming Data
Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees
Fast FFT and DCT Based on the FFTW Library
Wrapper for 'FFTW3' Includes: One-Dimensional Univariate,
One-Dimensional Multivariate, and Two-Dimensional Transform
Generalized Archimedean Copula
Flury and Gautschi algorithms
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Forest Growth Model Utilities
Fractional Gaussian Noise and power law decay time series model
fitting
Fast Goodness-of-fit Test
Floating Grid Permutation Technique
Feature Grouping and Selection Over an Undirected Graph
Function GUI
Tests for Right and Interval-Censored Survival Data Based on the
Fleming-Harrington Class
Provide functions for forest inventory calculations
Retrospective Noise Control for fMRI
Classical, Reloaded and Adaptive FastICA Algorithms
Tools for Spatial Data
Random Fields (and Bridges) Simulations
A Lightweight and Flexible Web Framework
A Biostatisticians Toolbox for Various Activities, Including
Plotting, Data Cleanup, and Data Analysis
Map Data to Visualize the Fifty U.S. States with Alaska and
Hawaii Insets
Simple Key-Value Database
Simple key-value database using SQLite
File-Backed Matrix Class with Convenient Read and Write Access
Easy Management of File Names
Chunk Processing or Split-Apply-Combine on Delimited Files and
Distributed Dataframes
Effective File Navigation from the R Console
Handy File and String Manipulation
Matrix Completion, Imputation, and Inpainting Methods
Rmetrics - Importing Economic and Financial Data
Financial Analysis and Regression Diagnostic Analysis
Solving financial problems in R
Financial Instrument Model Infrastructure and Meta-Data
Financial Mathematics for Actuaries
Classifies implicit trading activity from market quotes and
computes the probability of informed trading
Time Value of Money, Time Series Analysis and Computational
Finance
Parse Darwin Core Files
Covariance Matrix Estimation and Regularization for Finance
Find all root(s) of the equation and Find root(s) of the
equation by dichotomy
Finding Heterogeneous Treatment Effects
Find Models with Minimum IC
Functions to Find an Acceptable Python Binary
A View Generator for Multidimensional Data
Fine-Scale Population Analysis
Functions to Operate on Binary Fingerprint Data
Fingertips Data for Public Health
Computation of the Probability of Ruin Within a Finite Time
Horizon
Financial Data from U.S. Securities and Exchange Commission
The Fisher-EM algorithm
Fisheye and Hyperbolic-space-alike Interactive Visualization
Tools in R
Iterative FISH-based Calibration of Hi-C Data
Dataset of Measurements of Fish Species at Kirkkojarvi Lake,
Finland
Fishery Science Methods and Models in R
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta
Log-Normal Models
Prediction of Fish Movement Parameters
An Analytical Tool for Aquatic Respirometry
Compare Fitted Models
NONMEM platform
Subset AR Model Fitting
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Scrapes Data from Fitbit
Garmin FIT File Decoder
Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Fitting Density Ratio Classes
Fit Hydraulic Vulnerability Curves
FITS (Flexible Image Transport System) Utilities
Fit Hundreds of Theoretical Distributions to Empirical Data
fitTetra is an R package for assigning tetraploid genotype
scores
Fit Univariate Distributions
Data and Code Behind the Stories and Interactives at
'FiveThirtyEight'
Algorithms for Finding Fixed Point Vectors of Functions
The Distribution of Distances Between Discrete Events in Fixed
Time
Fixed Sequence Multiple Testing Procedures
Fizz Buzz Implementation
Fast Kalman Filter
Feature-Based Landscape Analysis of Continuous and Constrained
Optimization Problems
Fits Piecewise Constant Models with Data-Adaptive Knots
FLuctuation ANalysis on Mutation Models
Family of Lasso Regression
Functional LARS
Implementation of optimal hierarchical clustering
Transforms Contingency Tables to Data Frames, and Analyses Them
Flexible Cluster Algorithms
Flexible Cluster-Weighted Modeling
R Markdown Format for Flexible Dashboards
Tools to Work with the Flexible Dirichlet Distribution
Flexible Mixture Modeling
Tools to Fit Flexible Parametric Curves
Flexible Parametric Models for Censored and Truncated Data
Flexible Relative Survival Analysis
Flexible Parametric Survival and Multi-State Models
Flexible Parametric Cure Models
Functions for Tabular Reporting
Don't Get Stuck with Stacks in R
Hidden Markov Model for Solar Geolocation Archival Tags
Farewell’s Linear Increments Model
Multivariate Permutation Tests
Dithionite Scramblase Assay Analysis
Robust Testing in GLMs
Fused Lasso Latent Feature Model
32-Bit Floats
Process Synchronization Using File Locks
Statistical Methods for the (Regional) Analysis of Flood
Frequency
Tools for Interacting with the Brazilian Flora 2020
Cytometric Diversity Indices from Gated Data
Tools for characterizing flowering traits
Forecasts future values of a univariate time series
Streamlining Design and Deployment of Complex Workflows
The Environmental Costs of Flow Regulation
Flow Selection and Analysis
Daily Streamflow Trend and Change Point Screening
Fuzzy Logic Rule Classifier
Path algorithm for the general Fused Lasso Signal Approximator
Multi-Threaded Multidimensional Fixed Size Subset Sum Solver and
Extension to General-Purpose Knapsack Problem
Data Sets from Flury, 1997
Flux rate calculation from dynamic closed chamber measurements
Data Sets from "Forecasting: Methods and Applications" by
Makridakis, Wheelwright & Hyndman (1998)
Financial Market Building Blocks
Factorial Experiments with Minimum Level Changes
Financial Market Date Calculations
A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability and Monte Carlo Analysis
Filtered Monotonic Polynomial IRT Models
Analysis of fMRI Experiments
Functional MRI Quality Assurance Routines
Variable Selection in Finite Mixture of AFT Regression and FMR
Functions for Medical Statistics Book with some Demographic Data
Regression Models with Finite Mixtures of Skew Heavy-Tailed
Errors
Finite Moment Stable Distributions
Variance estimation of FMT method (Fully Moderated t-statistic)
Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Fast Nearest Neighbor Search Algorithms and Applications
Rmetrics - Nonlinear and Chaotic Time Series Modelling
greedy variable selection
Focused, Interactive Multidimensional Scaling
Summarize CRAN Check Results in the Terminal
A Self-Describing Dataset Format and Interface
Fonts with 'Bitstream Vera Fonts' License
Computer Modern font for use with extrafont package
Additional 'ggplot2' Themes Using 'Hind' Fonts
Liberation Fonts
Additional 'ggplot2' Themes Using 'M+' Fonts
Set of Installed Fonts
visualisation and analysis of food web networks
Rmetrics - Pricing and Evaluating Basic Options
Foraminifera and Community Ecology Analyses
Tools for Working with Categorical Variables (Factors)
Provides Foreach Looping Construct for R
Forecastable Component Analysis
Forecasting Functions for Time Series and Linear Models
Forecast Combination Methods
Forecast Combinations
A Basis for Modular Model Creation
Convenient Functions for Ensemble Time Series Forecasts
Forecasting for Stationary and Non-Stationary Time Series
Forecasting Time Series by Theta Models
Floating-Point Genetic Algorithms with Statistical Forecast
Based Inheritance Operator
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Statistical Methods in Forensic Genetics
Statistical tools for the interpretation of forensic DNA
mixtures
Visualizes Random Forests with Feature Contributions
Design-Based Global and Small-Area Estimations for Multiphase
Forest Inventories
Forest Plots from Regression Models
Advanced Forest Plot Using 'grid' Graphics
Analyzing Remotely Sensed Forest Data
Imputation of Missing Values Through a Forward Imputation
Algorithm
Functions from the 2nd Italian Forest Inventory (INFC)
Elementary arithemtic in formal series rings
Format R Code Automatically
Create 'Formattable' Data Structures
Extended Model Formulas
Programmatic Utilities for Manipulating Formulas, Expressions,
Calls, Assignments and Other R Objects
Add Formula Interfaces to Modelling Functions
R Fortunes
Forward search
Data from Surveys Conducted by Forwards
Forward Search using asymptotic theory
Palaeoecological and Palaeogeographical Analysis Tools
Computes Numeric Fourier Integrals
Bayesian 4 Parameter Item Response Model
FourScores - A game for two players
Spatio-Temporal Fixation Pattern Analysis
Flexible Procedures for Clustering
Restricted MLE for Functional Principal Components Analysis
Two Dimensional Functional Principal Component Analysis
Reliable Comparison of Floating Point Numbers
PD-Clustering and Factor PD-Clustering
Estimating Finite Population Total
Frequent Pattern Mining Outliers
Rmetrics - Portfolio Selection and Optimization
Computing the noncentrality parameter of the noncentral F
distribution
Data for "Forecasting: principles and practice"
Data for "Forecasting: Principles and Practice" (2nd Edition)
Approximation of First-Passage-Time Densities for Diffusion
Processes
Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
Fraction Proliferation via a Quiescent Growth Model
A Fractal Time Series Modeling and Analysis Package
Estimation of fractal dimensions
Simulation and Parameter Estimation of Randomized Sierpinski
Carpets using the p-p-p-q-Model
Generate fractal time series with non-normal returns
distribution
Numeric number into fraction
Vulgar Fractions in R
Fragility Index
Fragment Analysis in R
Fitting Frailty Models with the EM Algorithm
Frailty Models via H-likelihood
General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction
General Semiparametric Shared Frailty Model
Tools for Functional Response Analysis
Estimation in Dual Frame Surveys
Detect the Language of Text
Financial Risk Modelling and Portfolio Optimisation with R
Fast and Robust Bootstrap
Fuzzy Rule-Based Systems for Classification and Regression Tasks
Fast Regularized Canonical Correlation Analysis
Post-Processing EddyPro Full Output File
Free-Knot Splines
Free Sorting Data Analysis
Statistical algorithms used in common data mining course
Wrapper Functions for 'Freesurfer'
Family REGional Association Tests
Rmetrics - Regression Based Decision and Prediction
Functional Regression using Signal Compression Approach
FREQ: Estimate population size from capture frequencies
Frequency Distribution
Frequency Domain Based Analysis: Dynamic PCA
Functional Time Series: Dynamic Functional Principal Components
Frequency Moving Average Plots (MAP) of Multinomial Data by a
Continuous Covariate
Novel Methods for Parallel Coordinates
Frequency Profiles Computing and Plotting
Create Frequency Tables with Counts and Rates
Spectral Decomposition of Connectedness Measures
Working with Frequency Tables
Feature Selection Algorithms for Computer Aided Diagnosis
Fractional Factorial Designs with 2-Level Factors
Catalogues of resolution IV 128 run 2-level fractional
factorials up to 33 factors that do have 5-letter words
Fixed Rank Kriging
Fit Repeated Linear Regressions
Regression Analysis of Fractional Responses
Regression Analysis of Fractional Responses Under Unobserved
Heterogeneity
Regression Analysis of Panel Fractional Responses
The Generalized Hyperbolic Distribution, Related Distributions
and Their Applications in Finance
Fast Robust Moments
Stochastic Frontier Analysis
Partial Frontier Efficiency Analysis
Full Randomization Test
Simple Fisheries Stock Assessment Methods
Data to Support Fish Stock Assessment ('FSA') Package
Automated Feature Selection from 'caret'
Robust Data Analysis Through Monitoring and Dynamic
Visualization
Selecting Attributes
'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Import and Analysis of OMR Data from FormScanner
Fast Searches for Interactions
Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Fuzzy Set Ordination
Social Relations Analyses with Roles ("Family SRM")
Lightning Fast Serialization of Data Frames for R
Fst-Heterozygosity Smoothed Quantiles
Unified Sequence-Based Association Tests Allowing for Multiple
Functional Annotation Scores
A Wrapper for the API of the Danish Parliament
Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data
Features and Strings for Nonparametric Regression
Rmetrics - Trading and Rebalancing Financial Instruments
FTRL Proximal Implementation for Elastic Net Regression
R interface to tslib (a time series library in c++)
Functional Time Series Analysis
Spectral Density Estimation and Comparison for Functional Time
Series
EPA fuel economy data
FUzzy GEnetic, a machine learning algorithm to construct
prediction model based on fuzzy logic
Full Factorial Breeding Analysis
Full Text of 'Scholarly' Articles Across Many Data Sources
Use R for Fun
Convenience Functions by Michael Chirico
Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Functional Profiling of Microarray Expression Data
A package for functional data clustering
Hive Plots of R Package Function Calls
Curry, Compose, and other higher-order functions
An algorithm for gene and gene set network inference
Functional Programming in R
Functional Clustering Algorithms
An S4 Class for Functional Data
Clustering in the Discriminative Functional Subspace
Fungible Coefficients and Monte Carlo Functions
Model-based clustering in group-specific functional subspaces
Rmetrics - Modelling Trends and Unit Roots
Genomic Latent Dirichlet Allocation
Exploratory Data Analysis and Data Preparation Tool-Box Book
Simple Utility Providing Terminal Access to all R Functions
Functional Rarity Indices Computation
Functional Regression for Irregularly Timed Data
Functional Tangential Angle Pseudo-Depth
Functions for Time Series Analysis
Furniture for Quantitative Scientists
Community Detection via Fused Principal Component Analysis
Fused Lasso for High-Dimensional Regression over Groups
Clustering and Feature Screening using L1 Fusion Penalty
A Tiny Utility Providing Polymorphic Operations
A Logging Utility for R
Random Matrix Generation and Manipulation
Futile options management
A framework for working in a functional programming paradigm in
R
Interim Analysis of Operational Futility in Randomized Trials
with Time-to-Event Endpoints and Fixed Follow-Up
Unified Parallel and Distributed Processing in R for Everyone
A Future API for Parallel and Distributed Processing using
BatchJobs
A Future API for Parallel and Distributed Processing using
'batchtools'
Find, Characterize, and Explore Extreme Events in Climate
Projections
Fuzz-Test R Functions
Computing Fuzzy p-Value
(Fuzzy) AHP Calculation
Exact calculation of fuzzy decision rules for multiple testing
Fuzzy Forests
Join Tables Together on Inexact Matching
Fuzzy Linear Programming
Multi-Criteria Decision Making Methods for Fuzzy Data
Tools to Deal with Fuzzy Numbers
Apply Two Fuzzy Numbers on a Monotone Function
Fuzzy Logic Toolkit for R
Fuzzy Rank Tests and Confidence Intervals
Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Statistical Methods for Trapezoidal Fuzzy Numbers
Type 1 Fuzzy Logic Toolkit
Fuzzy String Matching
Forward search for Mokken scale analysis
Selecting Variables in Regression Models
Fire Weather Index System and Fire Behaviour Prediction System
Calculations
Fisher-Wright Population Simulation
Exchange Rate Regime Analysis
Delayed-Data Packages
A package performing Dynamic Bayesian Network inference
Find and Fill Gaps in Metabolic Networks
Grain-Size Statistics and Description of Sediment
Genetic Algorithms
Abbreviating Items Measures using Genetic Algorithms
Framework for Generalized Subspace Pattern Mining
GAD: Analysis of variance from general principles
A Genetic Algorithm for Learning Directed Acyclic Graphs
First Passage Time Simulation for Gaussian Diffusion Processes
Easy Use of 'GADM' Shapefiles
Genetic Algorithm for Curve Fitting
Genetic and Isotopic Assignment Accounting for Habitat
Suitability
Lift (Gains) Tables and Charts
Graphical Extension with Accuracy in Parameter Estimation
(GAIPE)
Genetic Algorithms and C-Steps Based LTS (Least Trimmed Squares)
Estimation
Generalized Additive Models
Data for "GAMs: An Introduction with R"
Fit the Gambin Model to Species Abundance Distributions
Generalized linear and additive models by likelihood based
boosting
Boosting Methods for 'GAMLSS'
Estimating multistate models using gamboost()
Functions and Data for a Course on Modern Regression and
Classification
Generalized Additive Models for Bivariate Conditional Dependence
Structures and Vine Copulas
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for
Binary Classification
Statistical Estimation of Game-Theoretic Models
Genetic Algorithm for Sequential Symmetric Games
Cooperative Game Theory
Tools for Calculating Allocations in Game Theory
Gamma Lasso Regression
Generalised Additive Models for Location Scale and Shape
Extra Additive Terms for GAMLSS Models
Fitting an Interval Response Variable Using `gamlss.family'
Distributions
GAMLSS Data
Demos for GAMLSS
Distributions for Generalized Additive Models for Location Scale
and Shape
Fitting Mixed (Inflated and Adjusted) Distributions
Fitting Mixture Distributions with GAMLSS
Fitting non linear parametric GAMLSS models
Spatial Terms in Generalized Additive Models for Location Scale
and Shape Models
Generating and Fitting Truncated `gamlss.family' Distributions
GAMLSS Utilities
Bimodal Skew Symmetric Normal Distribution
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
classic gamma regression: joint modeling of mean and shape
parameters
Generalized additive mixed model analysis via slice sampling
Robust and Sparse Regression via Gamma-Divergence
Calculate the RR for the GAM
Fit Regularization Path for Generalized Additive Models
Gene Association Network-based Pathway Analysis
The GANPA Datasets Package
Genetic Algorithm optimization for real-based and
permutation-based problems
Genetic Analysis Package
Datasets for 'gap'
Searching Parsimony Models with Genetic Algorithms
Fill Missing Values in Satellite Data
Functions for Drawing Gapped Cluster Heatmap with ggplot2
Data from Gapminder
Authorize and Request Google Analytics Data
Generalized Autoregressive Score Models
Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Greenhouse Gas Flux Calculation from Chamber Measurements
Analyzing Gastric Emptying from MRI or Scintigraphy
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Easily Gate or Select Points on a Scatter Plot
Gaussian Process Fitting
Difference measures for multivariate Gaussian probability
density functions
The Greatest Mathematician Since Antiquity
Collection of functions for Gaussian quadrature
Parse Eye-Tracking Data into Fixations
Generalize Lambda Distribution and Generalized Bootstrapping
Generalized Beta Distribution of the Second Kind: Properties,
Likelihood, Estimation
Generalized Berk-Jones Test for Set-Based Inference in Genetic
Association Studies
Generalized Boosted Regression Models
Convert GBM Object Trees to SAS Code
A Bin Packing Problem Solver
Utilities for processing Rd objects and files
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Hyperparameter Search for Gradient Boosted Trees
Simulation of Real and Complex Numbers and Small Programming
Utilities
Guided Correction Approach for Inherited bias (GCAI.bias)
Simple Peak Alignment for Gas-Chromatography Data
Graph-based two-sample tests for categorical data
'GPU'/CPU Benchmarking in Debian-Based Systems
Global Charcoal Database
LASSO and Elastic Net (Adaptive) Penalized Least Squares,
Logistic Regression, HHSVM, Squared Hinge SVM and Expectile
Regression using a Fast GCD Algorithm
Generalized Competing Event Model
Google Citation Parser
Analysis of Geostatistical Count Data using Gaussian Copulas
Clustering Graphics
Gaussian Copula Marginal Regression
Concord method for Graphical Model Selection
Data for "R Graphics Cookbook"
Generalized Credit Portfolio Model
Geographical Detectors
Datasets for the Book Graphical Data Analysis with R
Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Various R Programming Tools for Data Manipulation
A Toolbox for the Analysis of Categorical Data in Social
Sciences, and Especially Geometric Data Analysis
Download, slice, and normalize GDELT data
Generalized Diffusion Magnetic Resonance Imaging
The Generalized DINA Model Framework
Distances and Routes on Geographical Grids
Generalized Dissimilarity Modeling
Genomic Data Management
Tools to Work with Google DNS Over HTTPS API
Generalized Dynamic Principal Components
Descriptive Statistics of Grouped Data
Utilities for Graphical Rendering
Geostatistical Analysis in R
Geometrically Designed Spline Regression
Generalized Estimation Equation Solver
Generalised Estimating Equations (GEE/WGEE) using 'Armadillo'
and S4
Adaptive Association Tests for Multiple Phenotypes using
Generalized Estimating Equations (GEE)
Marginal Proportional Hazards Mixture Cure Models with
Generalized Estimating Equations
Solve Generalized Estimating Equations
Mediation Analysis for Generalized Linear Models Using the
Difference Method
Generalized Estimating Equation Package
Modified Variance Estimators for Generalized Estimating
Equations
An API for M-Estimation
Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Analysis of Evolutionary Diversification
Misspecified Models for Gene-Environment Interaction
Generalized Elastic Nets
File Conversion for 'Gem Infrasound Logger'
File Conversion for 'Gem Infrasound Logger'
Generalized Multistate Simulation Model
Network Meta-Analysis Using Bayesian Methods
genome-wide SNP association analysis
Package contains data which is used by GenABEL example and test
functions
R Based Genetic Algorithm
Classes and Methods to Use Genetic Algorithms for Feature
Selection
Global ENvironmental ASsessment Information System (GENASIS)
computational tools
Analysis and Visualization Tools for Genetic Barcode Data
Clopper-Pearson Confidence Interval and Generalized Binomial
Distribution
Genetic Class Association Testing
General Cross Validation Engine
Generate and Modify Synthetic Datasets
Predict Gender from Names Using Historical Data
Predict Gender from Brazilian First Names
Gender Prediction Based on First Names
Generated Probability Distribution Models
Segmentation and Classification of Accelerometer Data
Package For Reading Binary files
Visualisation of Raw or Segmented Accelerometer Data
Gene Expression Clustering and Gene Network
Identification of Periodically Expressed Genes
Package for Generalized F-statistics
Bayesian calculation of gene-specific FST from genomic SNP data
Profiling a gene list into GOslim or KEGG function pie
Gene Model Plotting in R
Modeling and Inferring Gene Networks
Belief Propagation in Genotype-Phenotype Networks
Genetic Epidemiology Design and Inference
Population Genetic Data Analysis Using Genepop
Generalized Correlations and Initial Causal Path
Goodness of Fit Tests for Logistic Regression Models
The Generalized Hyperbolic Distribution
Credible Visualization for Two-Dimensional Projections of Data
Blinder-Oaxaca Decomposition for Generalized Linear Model
Generate Data Containing Fake Personally Identifiable
Information
Construct time delay gene regulatory network
A Gene-signatures finder tools
Genome-Wide Association Study with SLOPE
Population Genetics
Identify Favorable Subsets of Germplasm Collections
Spatial Graph-Theoretic Genetic Gravity Modelling
The Forward Imputation: A Sequential Distance-Based Approach for
Imputing Missing Data
A New, Fast, and Outlier Resistant Hierarchical Clustering
Algorithm
Tools for Working with the 'Genius' API
Functions for generating and manipulating binned kernel density
estimates
Path algorithm for generalized lasso problems
Genealogical Data Analysis
Generalized Logistic Distribution
Functions for the Bayesian Analysis of GWAS Data
Application of MOSS algorithm to genome-wide association study
(GWAS)
Finding the DNA and Protein Sequences of Any Genomic or
Proteomic Loci
'Plot genome wide values for all chromosomes'
Models Dealing with Spatial Dependency in Genomic Data
Efficient Breeding by Genomic Mating
Circular Genomic Permutation using Gwas p-Values of Association
Collection of Tools for Genomic Data Analysis
Plot Publication-Grade Gene and Genome Maps
Simulation of Discrete Random Variables with Given Correlation
Matrix and Marginal Distributions
SNP Genotype Marker Design and Analysis
Generalized Pathmox Approach Segmentation Tree Analysis
Generalized Ridge Trace Plots for Ridge Regression
R Functions for Generalized Simulated Annealing
generalized ensemble methods
Generalized Spherical Distributions
Generating Multi-State Survival Data
Spline Based Window Boundaries for Genomic Analyses
Draw and Annotate Maps, Especially Charts of the North Atlantic
Split 'Geospatial' Objects into Pieces
Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Geographic Box Plot
Analysis and Modeling for Geostatistical Count Data
A geometrical Approach to Differential expression and gene-set
enrichment
3D-Visualization of Geoelectric Resistivity Measurement Profiles
'ggplot2' Faceting Utilities for Geographical Data
Spatial Prediction for Function Value Data
Select Sparse Geoadditive Models for Spatial Prediction
Quantification of the effect of geographic versus environmental
isolation on genetic differentiation
Tools for Geohash Creation and Manipulation
Classes for 'GeoJSON'
Convert Data from and to 'GeoJSON' or 'TopoJSON'
Tools for Validating 'GeoJSON'
A GeoJson Processing Toolkit
Web-Processing of Large Gridded Datasets
Analysis of Light Based Geolocator Data
Topographic and Geologic Mapping
Data for topographic and Geologic Mapping
(Geometric) Forecast Combination Methods
Fetch 'GeOMe-db' FIMS Data
Geospatial Data Integration
Tools for Reading and Writing ISO/OGC Geographic Metadata
Mesh Generation and Surface Tesselation
Network Visualization in the 'ggplot2' Framework
Geospatial Queries Using 'PyMongo'
Geometric Morphometric Analyses of 2D/3D Landmark Data
Interface to www.geonames.org web service
'GeoJSON' Topology Calculations and Operations
Interface to the Geoparser.io API for Identifying and
Disambiguating Places Mentioned in Text
Analysis of Geostatistical Data
Calculating Geographic Range from Occurrence Data
A Package for Generalised Linear Spatial Models
Robust Geostatistical Analysis of Spatial Data
GeoServer REST API R Interface
Geological Time Scale Plotting
Facilitate Generating of Distance Matrices Used in Package
'spacom' and Plotting Data on Maps
Classes and Methods for Working with Spectral Data with
Space-Time Attributes
Spherical Trigonometry
Geostatistical Analysis and Design of Optimal Spatial Sampling
Networks
Spatio-Temporal; Inverse Distance Weighting and Radial Basis
Functions with Distance-Based Regression
Geostatistical Modelling with Likelihood and Bayes
Geotechnical Engineering
Geo tools
Tools to Improve the Use of Geostatistic
An R Plug-in for the Distributed Hydrological Model GEOtop
Zoo of Geometric Objects
Google Encoded Polyline Algorithm Format
Estimation and Fit Diagnostics for Generalized Exponential
Random Graph Models
Germination Indexes for Seed Germination Variables for
Ecophysiological Studies
Generalized Structured Component Analysis (GSCA)
Gene-Based Segregation Test
R Client for GESIS Data Catalogue (DBK)
Gene Expression State Transformation
Use and Explore CRU CL v. 2.0 Climatology Elements in R
Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA
System
Download and Aggregate High Frequency Trading Data from Bovespa
Reading Financial Reports from Bovespa's ITR System
Get Landsat 8 Data from Amazon Public Data Sets
Reading Bibliometric Data from Lattes Platform
Get Meteorological Data for Hydrologic Models
Quantifying Systematic Heterogeneity in Meta-Analysis
C-Like 'getopt' Behavior
Parsing Command-Line Arguments and Variable Interpolation
Masked User Input
GetR: Calculate Guttman error trees in R
General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Get WHO Tuberculosis Data
Get Data for Brazilian Bonds (Tesouro Direto)
Learning Optimization and Machine Learning for Statistics
Get the Timezone Information
GEV Conditional Density Estimation Network
ARMA-GARCH/APARCH Models with GEV and Stable Distributions
A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data
Group Factor Analysis
Tools for Working with Hansen et al. Global Forest Change
Dataset
Tests for General Factorial Designs
Green Finance and Environmental Risk
Generalized Farlie-Gumbel-Morgenstern Copula
Implements Group Fused Multinomial Regression
Grab Bag of 'ggplot2' Functions
Alluvial Diagrams in 'ggplot2'
Extension to 'ggplot2'
Extra Coordinate Systems, 'Geoms', Statistical Transformations,
Scales and Fonts for 'ggplot2'
Categorical Scatter (Violin Point) Plots
Chernoff Faces for 'ggplot2'
Compare Timing of Network Visualizations
Simpler Appearance Modification of 'ggplot2'
Visualization of a Correlation Matrix using 'ggplot2'
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Dynamic Model of Choice with Parallel Computation, and C++
Capabilities
Genotype Plus Genotype-by-Environment Biplots
Interactive GGE Biplots in R
GGE Biplots with 'ggplot2'
Interactive 'ggplot2' Layer and Theme Aesthetic Editor
Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Visualization Tools for Genealogical Data
Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Show Large Facet Dimensions by Sampling
Summarise a Distribution Through Coloured Intervals
Fit Text Inside a Box in 'ggplot2'
Accelerating 'ggplot2'
Formula Interface to the Grammar of Graphics
Data Visualization Tools for Statistical Analysis Results
Draw Gene Arrow Maps in 'ggplot2'
Capture the Spirit of Your 'ggplot2' Calls
Utilities for Creating Guitar Tablature
Create a Half Normal Plot Using 'ggplot2'
Highlight Lines and Points in 'ggplot2'
Use Image in 'ggplot2'
Raw Accelerometer Data Analysis
Make 'ggplot2' Graphics Interactive
Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Joyplots in 'ggplot2'
Group Lasso Penalized Learning Using a Unified BMD Algorithm
Geom for Logo Sequence Plots
Create 'ggplot2' Plots in a Loop
Functions for graphical Markov models
Spatial Visualization with ggplot2
Tools for Analyzing MCMC Simulations from Bayesian Inference
Mosaic Plots in the 'ggplot2' Framework
Gaussian Graphical Models Using Ridge Penalty Followed by
Thresholding and Reestimation
Gaussian Graphs Models Selection
Create Muller Plots of Evolutionary Dynamics
Geometries to Plot Networks with 'ggplot2'
Variations of Parallel Coordinate Plots for Categorical Data
Create Elegant Data Visualisations Using the Grammar of Graphics
Movies Data
'RStudio' Addin for Teaching and Learning 'ggplot2'
Create Ggplots via a Graphical User Interface
Miscellaneous Extensions to 'ggplot2'
Polygons with Holes for the Grammar of Graphics
'ggplot2' Based Publication Ready Plots
Annotate Statistical Tests for 'ggplot2'
Quality Control Charts for the Grammar of Graphics Plotting
System
Quiver Plots for 'ggplot2'
Visually Exploring Random Forests
An Implementation of Grammar of Graphics for Graphs and Networks
Allows Interactive Visualization of Data Through a Web Browser
GUI
Repulsive Text and Label Geoms for 'ggplot2'
Ridgeline Plots in 'ggplot2'
package for roc curve plot with ggplot2
Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
A 'ggplot2' Extension for Drawing Publication-Ready Sequence
Logos
Significance Brackets for 'ggplot2'
North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
Spatial Data Framework for ggplot2
Extensions to 'ggplot2' for Radiation Spectra
Horizontal 'ggplot2' Components
Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Add-in to Customize 'ggplot2' Themes
Extra Themes, Scales and Geoms for 'ggplot2'
Graficas Versatiles Con 'ggplot2'
Interactive Grammar of Graphics
'GitHub' 'API'
Genome-Wide Haplotyping
Studio Ghibli Palette Generator
Lightweight GitHub Package Installer
Gauss Hermite Quadrature with pruning
A Package on Generalized Hyperbolic Distribution and Its Special
Cases
Gene Set Uncertainty in Enrichment Analysis
Component Geometry Decomposition
Naive Gibbs Sampling with Metropolis Steps
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Random Variate Generator for the GIG Distribution
Gillespie's Stochastic Simulation Algorithm (SSA)
Group Iterative Multiple Model Estimation
Download and Process GIMMS NDVI3g Data
High Throughput Phenotyping
Computing the Gini-Based Coefficients for Weighted and Negative
Attributes
Generalized Iterative Proportional Fitting for Relational Models
R Interface to the Giphy API
Gibbs Random Fields Analysis
The giRaph package for graph representation in R
Some further GIS capabilities for R
Work with 'GitHub' 'Gists'
Provides Access to Git Repositories
Rstudio Addin for Version Control and Assignment Management
using Git
A Helpful Way to Install R Packages Hosted on GitHub
Access to the Gitlab API
Quantification of Pinned Microbial Cultures
The GiViTI Calibration Test and Belt
Constructing panels of population pyramid plots based on lattice
Generalized Joint Attribute Modeling
Generalised Joint Regression Modelling
g-and-k and g-and-h Distribution Functions
Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
Glacier Surface Mass Balance Model
Penalization in Large Scale Generalized Linear Array Models
Generalized Linear Autoregressive Moving Average Models
Interface to 'Glassdoor' API
Graphical lasso- estimation of Gaussian graphical models
General Linear Ballistic Accumulator Models
Calculate Textures from Grey-Level Co-Occurrence Matrices
(GLCMs)
Estimation and Use of the Generalised (Tukey) Lambda
Distribution
Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Generalized Linear Density Ratio Models
Global and Individual Tests for Direct Effects
Learning Interactions via Hierarchical Group-Lasso
Regularization
Generalised log-linear model
Generalized Linear Latent Variable Models
Distributed 'glm' for Big Data using 'ddR' API
Predicted Values and Discrete Changes for GLM
Fitting Generalized Linear Models
An Adaptive Test on High Dimensional Parameters in Generalized
Linear Models
All Hierarchical or Graphical Models for Generalized Linear
Model
Bayesian Fractional Polynomials for GLMs
Fitting Generalized Linear Models Subject to Constraints
R Code for Simulation of GLMDM
Generalized Linear Mixed Model Trees
Graph-Constrained Regularization for Sparse Generalized Linear
Models
Fit GLM with LEP-based penalized maximum likelihood
Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Generalised Linear Mixed Models with BUGS and JAGS
Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Generalized Linear Models with Clustering
Generalized Linear Mixed Model (GLMM) for Binary Randomized
Response Data
Fit a Generalized Linear Mixed Model
Generalized Linear Mixed Models using Template Model Builder
Lasso and Elastic-Net Regularized Generalized Linear Models
Fit a Penalized Constrained Continuation Ratio Model for
Predicting an Ordinal Response
Utilities for 'Glmnet'
L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Model selection and multimodel inference made easy
Variable Selection Deviation Measures and Instability Tests for
High-Dimensional Generalized Linear Models
Generalized Linear Models Extended
Testing the additional predictive value of high-dimensional data
Global Deviance Permutation Tests
Bi-Level Optimization of Metabolic Network Models
Global Gene-Set Analysis for Association Studies
Generate Functions to Get or Set Global Options
Objective functions for benchmarking the performance of global
optimization algorithms
Identify Global Objects in R Expressions
Plot 2D and 3D Views of the Earth, Including Major Coastline
Fitting and Testing Generalized Logistic Distributions
R Interface to C API of GLPK
Generalized Logrank Tests for Interval-censored Failure Time
Data
Likelihood Ratio Test for Genome-Wide Association under Genetic
Heterogeneity
Generalized Least Squares with Measurement Error
Interpreted String Literals
Tools for Analysing N-Glycan Data
Granger Mediation Analysis
Genomic Mediation Analysis with Adaptive Confounding Adjustment
Access the Gmail RESTful API
Distance and Travel Time Between Two Points from Google Maps
Fast Estimation of Gaussian Mixture Copula Models
Graph Based Multiple Comparison Procedures
Generalized Minimum Distance of distributions
Accessing a Geometallurgical Database with R
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Geometric Median, k-Median Clustering and Robust Median PCA
Mediation Analysis for Multiple and Multi-Stage Mediators
Meta-Analysis via a Unified Framework of Confidence Distribution
Inference and Clustering of Functional Data
Descriptive Statistics, Transition Plots, and More
Generalized Method of Moments and Generalized Empirical
Likelihood
Likelihood-based Boosting for Generalized mixed models
Multinomial Logit Models with Random Parameters
Various R Programming Tools for Model Fitting
'2D plots of linear or integer programming models'
Multiple Precision Arithmetic
Generalised Management Strategy Evaluation Simulator
Interface Between GMT Map-Making Software and R
GMUM Machine Learning Group Package
Generalized Mann-Whitney Type Tests
Computation of Generalized Nash Equilibria
Goodness of Fit Test for Continuous Distribution Functions
Generalized Nonlinear Regression Models
Generalized Nonlinear Models
Generalized Non-negative Matrix Factorization Based on Renyi
Divergence
Read Data from Files Readable by 'gnumeric'
Weighted and lexicographical goal programming and optimization
Functions for Community Data and Ordinations
Model-diagnostics based on cumulative residuals
Fast DocumentTermMatrix and TermDocumentMatrix Creation
Goodness-of-Fit Tests for Copulae
Testing Goodness-of-Fit with the Kernel Density Estimator
Khmaladze Martingale Transformation Goodness-of-Fit Test
Goodness of Fit Noise Analysis Using Monte Carlo Techniques
Tests of Fit for some Probability Distributions
Classical Goodness-of-Fit Tests for Univariate Distributions
Goodness-of-Fit for Time-to-Event Data
Go Game Data Parser
GO-Functional-Network-based Gene-Set-Analysis
Generalized Orthogonal GARCH (GO-GARCH) models
Gene Ontology Label Discernment and Identification
GLM-Based Ordination Method
Association Analysis for Categorical Variables
Google Analytics API into R
Authenticate and Create Google APIs
Interface with Google Cloud Storage API
R Interface with Google Compute Engine
An Interface to Google Drive
Collect Data Programmatically by POST Methods to Google Forms
Call Google's 'Natural Language' API, 'Cloud Translation' API
and 'Cloud Speech' API
Encoding Coordinates into 'Google' Polylines
Working with Google's 'Public Data Explorer' DSPL Metadata Files
Manage Google Spreadsheets from R
R Interface to Google Charts
Accesses Google Maps APIs to Retrieve Data and Plot Maps
Visualization of Functional Analysis Data
Fit Generalized Odds Rate Mixture Cure Model with Interval
Censored Data
Generalized Order-Restricted Information Criterion for Selecting
Order-Restricted (Multivariate) Linear Models
functions to get public survey data in Japan
Gower's Distance
gpairs: The Generalized Pairs Plot
Gaussian Processes for Pareto Front Estimation and Optimization
GPA Factor Rotation
Generalized Poisson Binomial Distribution
Generalized Polynomial Chaos
Batch Effect Detection via Guided Principal Components Analysis
General Polygon Clipping Library for R
GPCSIV, Generalized Principal Component of Symbolic Interval
variables
General Profiling Method for Delay Differential Equation
Bootstrap goodness-of-fit test for the generalized Pareto
distribution
Apply Gaussian Process in Functional data analysis
Gaussian Processes Modeling
GNU Privacy Guard for R
Solving Complex Game Problems using Gaussian Processes
Generalized Pair Hidden Markov Chain Model for Sequence
Alignment
100 Data Sets for Statistics Education
Generalized Partial Linear Models (GPLM)
Various R Programming Tools for Plotting Data
Generalized Partially Linear Tree-Based Regression Model
Gaussian Process Modeling of Multi-Response Datasets
Analysing and plotting genotype-phenotype maps
Generalized Polynomial Modelling
Calculate Gross Primary Production (GPP) from O2 Time Series
A Minimalistic package to apply Gaussian Process in R
Gaussian Process Ranking of Multiple Time Series
Interface to the 'g:Profiler' Toolkit
gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments
Gaussian Processes Tool-Kit
GPU Functions for R Objects
Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
'GraphQL' Server in R
Prediction of G Quadruplexes and Other Non-B DNA Motifs
Graph-Constrained Estimation and Hypothesis Tests
Gradient Descent for Regression Tasks
Binary Grading functions for R
Interactive Color Gradient Picker Using 'htmlwidgets' and the
Modified JS Script 'jquery-gradient-picker'
Species distribution modelling using latent Gaussian random
fields
Graphical Independence Networks
Grammatical Evolution for R
Graphical Representation and Modeling of Metagenomic Reads
Creating Continuously Integrated Package Repositories from
Manifests
Graphical Analysis of Variance
Graphical Analysis of Variance Using ggplot2
Gene-Ranking Analysis of Pathway Expression
Make Binary Operators
Acyclic Probabilistic Finite Automata
Efficient Selection of Undirected Graphical Models for
High-Dimensional Datasets
A Multi-Platform GUI for Drawing Customizable Graphs in R
A Modular Multi-Step Graph Generator
Network Topology of Intravariable Clusters with Intervariable
Links
Graphical VAR for Experience Sampling Data
Quality Control for Graphics in R
Graph Kernels
Estimating Structural Invariants of Graphical Models
A Collection of Graphon Estimation Methods
A GraphQL Query Parser
Cluster Detection with Hypothesis Free Scan Statistic
Visualise Twitter Interactions
Grassmann Manifold Optimization
Meridional and Parallel Lines for Maps
Australian Tax Policy Analysis
Estimation Methods for Gravity Models
A Package for Graphical Modelling in R
Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Parameter Inference and Optimal Designs for Grouped and/or
Right-Censored Count Data
GRadient-Based RECognition of Spatial Patterns in Environmental
Data
Greedy Expected Posterior Loss
Greedy Experimental Design Construction
Greedy Stochastic Block Transition Models
Regression Helper Functions
Graphical Reporting for Clinical Trials
Simple and Scalable Statistical Modelling in R
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Fit a Grey-Zone Model with Survival Data
Generalized Random Forests (Beta)
Convert Spatial Grids to Polygons
Integration of base and grid graphics
Debugging 'grid' Graphics
Miscellaneous Functions for "Grid" Graphics
Redraw Base Graphics Using 'grid' Graphics
Drawing Graphs with 'grid'
Tools for Grid-Based Survey Sampling Design
A Simulation Tool to Determine the Required Sample Size for
Repertory Grid Studies
Export 'grid' Graphics as SVG
Uses Grieg-Smith method on 2 dimentional spatial data
Graphical Interaction Models
Importing Vector Graphics
General regression neural network
Genomic Regression Workbench
Generalized Regression on Orthogonal Components
The package was developed to fit fit many growth curves obtained
under different conditions
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
Creating Groups from Data
Regression Analysis of Grouped and Coarse Data
Regularized Multivariate Regression for Identifying Master
Predictors Using the GroupRemMap Penalty
A GUI-Based Program to Compute Probabilities Regarding Group
Sequential Designs
Group Subset Selection
Multiple Testing Procedure for Grouped Hypotheses
Wavelet Functional ANOVA Through Markov Groves
Bayesian Semi and Nonparametric Growth Curve Models that
Additionally Include Multiple Membership Random Effects
Bayesian Non-Parametric Dependent Models for Time-Indexed
Functional Data
Multivariate Normal and Elliptically-Contoured Repeated
Measurements Models
Simple Metrics to Summarize Growth Curves
Nonlinear Growth Models
Bayesian reconstruction of growth velocity
Estimate Growth Rates from Experimental Data
Fitting user specified models with Group Lasso penalty
Concave 1-norm and 2-norm group penalty in linear and logistic
regression
Regularization Paths for Regression Models with Grouped
Covariates
Penalized Regression Models with Overlapping Grouped Covariates
Group Sorted L1 Penalized Estimation
Group Screening and Selection
Patterns and Statistical Differences Between Two Groups of
Strings
Alternative Implementations of Base R Functions
GRS Test for Portfolio Efficiency, Its Statistical Power
Analysis, and Optimal Significance Level Calculation
General Recognition Theory
Tools for the Analysis of Gutenberg-Richter Distributions of
Earthquake Magnitudes
Gene set analysis
Gene Set Analysis using the Gamma Method
Utility Functions For GATK
Gene Set Analysis with QTL
Two functions for Generalized SARIMA time series simulation
Group Sequential Bayes Design
Implementing GSCAD Method for Image Denoising and Inpainting
Group Sequential Design
Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Gene Set Enrichment Analysis in R
Group Sequential Enrichment Design
Graph-Based Change-Point Detection (g-Segmentation)
Semi-Supervised Generalized Structural Equation Modeling
Group Sequential Design in Equivalence Studies
Calculation of selection coefficients
Download Google Sheets Using Just the URL
Global Soil Information Facilities
GEE_KM
Wrapper for the Gnu Scientific Library
Global Sea Level and Oxygen Isotope Data
Gamma Shape Mixture
Smoothing tools
Multivariate Genomic Selection
Global Surface Summary of the Day (GSOD) Weather Data from R
Group Sparse Optimization
Group Sequential Refined Secondary Boundary
General Smoothing Splines
Copula Density and 2-D Hazard Estimation using Smoothing Splines
Genotype-Specific Survival Estimation
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Utilities for strings and function arguments
Gibbs Sea Water Functions
Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Generalized Synthetic Control Method
Generalizability Theory for Information Retrieval Evaluation
Arrange 'Grobs' in Tables
Calculate efficiencies of group testing algorithms with
correlated responses
Generalized Turnbull's Estimator
Graph-Based Two-Sample Tests
Apply Generalizability Theory with R
Various R Programming Tools
Game-Theoretically OPtimal (GTOP) Reconciliation Method
Perform and Display Google Trends Queries
Genome and Transcriptome Wide Association Study
Genetics ToolboX
The Guardian API Wrapper
Maps, data and methods related to Guerry (1833) "Moral
Statistics of France"
Adjust Estimates of Learning for Guessing
GUI for DErivatives in R
Graphical User Interface for Generalized Multistate Simulation
Model
Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Graphical User Interface for Rprof()
The Gumbel-Hougaard Copula
Generalized UniFrac distances
Statistical Analysis of Monthly Background Checks of Gun
Purchases
Download and Process Public Domain Works from Project Gutenberg
Fast Calculation of the Likelihood of a Stochastic Survival
Model
Global Value Chains Tools
Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth Effects in GLMs
Global Validation of Linear Models Assumptions
Genome-Wide Association/Interaction Analysis and Rare Variant
Analysis with Family Data
Exact Hardy-Weinburg testing for Genome Wide Association Studies
Nonlocal Prior Based SNP Selection Tool for Genome-Wide
Association Studies
A Shiny App to Aid Interpretation of Geometrically-Weighted
Degree Estimates in Exponential Random Graph Models
Controlling the genome-wide type I error rate in association
mapping experiments
Geographically Weighted Fractal Analysis
Calculation of probabilities for inadequate and excessive
gestational weight gain
gWidgets API for building toolkit-independent, interactive GUIs
Rewrite of gWidgets API for Simplified GUI Construction
Implementation of gWidgets2 for the RGtk2 Package
Toolkit Implementation of gWidgets2 for tcltk
Toolkit Implementation of gWidgets for RGtk2
Toolkit implementation of gWidgets for tcltk package
Geographically Weighted Logistic Elastic Net Regression
Geographically-Weighted Models
Generalized Weighted Quantile Sum Regression
Generalized Waring Regression Model for Count Data
Genome-Wide Regression P-Value (Gwrpv)
Fits geographically weighted regression models with diagnostic
tools
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Estimating Genome-Wide Significance for Whole Genome Sequencing
Studies, Either Single SNP Tests or Region-Based Tests
Maximum Likelihood Estimation for Gene-by-Measured Environment
Interaction Models
Provides Access to the OpenAI Gym API
Kinship-Adjusted Survival SNP-Set Analysis
R Interface for H2O
Interface to the 'HDF5' Library
Software to perform Haar Fisz transforms
Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Utilities for using R scripts in Hadoop streaming
Read HYDRA Rainfall Data
Hierarchical Optimal Matching and Machine Learning Toolbox
Multiple Class Area under ROC Curve
Univariate non-parametric two-sample test based on empirical
Hankel transforms
Provides Easy Downloading Capabilities for the UK Parliament API
Recursive Organizer (ROR)
Inference of Trait Associations with SNP Haplotypes and Other
Attributes using the EM Algorithm
Multi-Locus Stepwise Regression
HapIM
Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Estimate Haplotype Relative Risks in Case-Control Data
Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Query 'HaploReg' and 'RegulomeDB'
Reconstruction of Haplotype-Blocks from Time Series Data
Functions to simulate haplotypes
Tool for Clustering Genotypes in Haplotypes
Haplotype Inference and Statistical Analysis of Genetic
Variation
Calculate Upcoming Birthday Dates of Github Repos
Haplotype Data Simulation
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Harmonic Mean p-Values and Model Averaging by Mean Maximum
Likelihood
Harmonic Regression to One or more Time Series
Wrangle Phylogenetic Distance Matrices and Other Utilities
Read HTTP Archive ('HAR') Data
Harvest the Classification Tree
A Parallel Simulation Framework
Full feature implementation of hash/associated
arrays/dictionaries
A collection of non-cryptographic hash functions
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
The Faster Hash Map
Hash R Objects to Integers Fast
Drawing Hasse Diagram
Import and Export 'SPSS', 'Stata' and 'SAS' Files
Hawkes process simulation and calibration toolkit
Damage functions from FEMA's HAZUS software for use in modeling
financial losses from natural disasters
Hierarchical Bayesian Modeling of Decision-Making Tasks
Hierarchical Bayesian Design for Clinical Trials
Hierarchical Bayesian Regression for GLMs
Hill/Bliss Independence Model for Combination Vaccines
Hierarchical Block Matrix Analysis
Hierarchical Bayesian Analysis of Recognition Memory
Hi-C BED File Analysis Pipeline
Hierarchical Bayesian Small Area Estimation
Hierarchical Bayesian Space-Time models for Gaussian space-time
data
Hidden correlation check
Interval estimation for the parameters of linear models with
heteroskedasticity (Wild Bootstrap)
Change Point Estimation for Regression with Heteroscedastic Data
Heteroscedastic Discriminant Analysis
High Dimensional Confidence Interval Based on Lasso and
Bootstrap
High Dimensional Supervised Classification and Clustering
Sample Size Calculation for High Dimensional Classification
Study
Use Known Groups in High-Dimensional Data to Derive Scores for
Plots
Hierarchical DECOmposition of Entropy for Categorical Map
Comparisons
Interface to the 'HDF5' Binary Data Format
Tests for High Dimensional Generalized Linear Models
High-Dimensional Inference
Highest (Posterior) Density Intervals
Fitting High Dimensional Linear Models
High-Dimensional Metrics
Statistical Analysis Tools for High Dimension Molecular Data
(HDMD)
Benchmarking and Visualization Toolkit for Penalized Cox Models
Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Principal Component Analysis in High-Dimensional Data
High-Dimensional Penalized Regression
Highest density regions and conditional density estimation
Hazard Discrimination Summary
High Dimensional Hypothesis Testing for Mean Vectors, Covariance
Matrices, and White Noise of Vector Time Series
The Lasso for the Tweedie's Compound Poisson Model Using an
IRLS-BMD Algorithm
Tools for Healthcare Machine Learning
Health Effects of Air Pollution and Temperature (HEAT)
Heat exchange calculations during physical activity
Heatmap with more sensible behavior
An Improved Heatmap Package
Fit Statistic for Binary Dependent Variable Models
Interactive Cluster Heat Maps Using 'plotly'
Robust Estimation Using Heavy-Tailed Distributions
Markov Models for Health Economic Evaluations
Calculate Healthy Eating Index (HEI) Scores
Decode and Validate HEIMS Data from Department of Education,
Australia
Visualize Alpha-Helical Peptide Sequences
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()'
and 'as.data.frame()'
Hello Java World
Tools for Earth Meteorological Analysis
R Tools for Helsinki Open Data
Hierarchical Ensemble Methods for Directed Acyclic Graphs
Visualizing Hypothesis Tests in Multivariate Linear Models
A Simpler Way to Find Your Files
Hierarchical Exponential-Family Random Graph Models
Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Heritability of Gene Expression for Next-Generation Sequencing
Generalized Hermite Distribution
Health-Economic Simulation Modeling and Decision Analysis
White's Test for Heteroskedasticity
Heteroskedastic Gaussian Process Modeling and Design under
Replication
Heterogeneity Measures in Meta-Analysis
Heteroscedastic t-regression
Heuristics Including Take the Best and Unit-Weight Linear
Hexagonal Binning Routines
Create Hexagon Sticker in R
Hexbin Plots with Triangles
Viewing Binary Files
Flights that departed Houston in 2011
High-dimensional Additive Modelling
Learning graphical models with hubs
Hierarchical Generalized Linear Models
Data for The hglm Package
Holonomic Gradient Method and Gradient Descent
Handy Functions for Working with HGNC Gene Symbols and
Affymetrix Probeset Identifiers
Statistical Analysis and Data Display: Heiberger and Holland
Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Age-Structured Spatio-Temporal Models for Infectious Disease
Counts
The Hilbert-Huang Transform: Tools and Methods
Simulation from distributions supported by nested hyperplanes
Bindings for the 'HaveIBeenPwned.com' Data Breach API
Systematic Analysis of Architectural Proteins and Functional
Elements in Blocking Long-Range Contacts Between Loci
Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
Probing Factor-Dependent Long-Range Contacts using Regression
with Higher-Order Interaction Terms
Hierarchical Climate Regionalization
Detection of domains in HiC data
The All-Configurations, Maximum-Interaction F-Test for Hidden
Additivity
Hidden Markov Models
High Dimensional Discriminant Analysis
Inference on High Dimensional Max-Stable Distributions
Hierarchical Partitioning
Functions For Performing Hierarchical Analysis of Distance
Sampling Data
Set Data Visualization Using Hierarchies
Convex Banding of the Covariance Matrix
Hierarchical Multiplicative Partitioning of Complex Phenotypes
Estimation and Tests of Hierarchical F-Statistics
A Lasso for Hierarchical Interactions
A graphical user interface for calculating power and sample size
for hierarchical data
Convex Hierarchical Testing of Interactions
Hybrid index estimation
A Wrapper for the 'Highcharts' Library
Two-Sample Tests for Equality of Means in High Dimension
Outlier Detection Algorithms for High-Dimensional Data
Tools for Highfrequency Data Analysis
Syntax Highlighter
Highlight HTML Text and Tables
Two-Sample Tests for High-Dimensional Mean Vectors
Syntax Highlighting for R Source Code
Determining and Evaluating High-Risk Zones
High Throughput Screening for Plate Based Essays
Simultaneous Critical Values for t-Tests in Very High Dimensions
Perform occupancy analysis
Estimation of Heritability in Linear Mixed Models
High-Dimensional Mediation Analysis
H-Index Calculator using Data from a Web of Science (WoS)
Citation Report
Tools for hypothesis testing based on Hypergeometric
Intersection distributions
hierarchical Pooled Optimal Design
Hierarchical Item Response Theory Models
Hidden State Speciation and Extinction
Data Sets from the History of Statistics and Data Visualization
Histogram-Valued Data Analysis
A Most Informative Histogram-Like Model
Construction of Regular and Irregular Histograms with Different
Options for Automatic Choice of Bins
Utility Functions for R Histograms
Data Sets for Historians
Hierarchical Inference Testing
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from
Convex Shapes
HIV calibrated model life tables for countries with generalized
HIV epidemics
Hadoop InteractiVE
2D and 3D Hive Plots for R
Conversion Tools for HK80 Geographical Coordinate System
Ensemble Clustering using K Means and Hierarchical Clustering
Spatial Extreme Value Analysis with the Hierarchical Model of
Reich and Shaby (2012)
API to Retrieve Data from Hong Kong Stock Exchange
Hurst-Kolmogorov Process
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Hierarchical Latent Space Network Model
Read HMD and HFD Data from the Web
The H-measure and other scalar classification performance
metrics
Hierarchical Multiple Imputation
Harrell Miscellaneous
HMM - Hidden Markov Models
Hidden Markov Models with Discrete Non-Parametric Observation
Distributions
Hidden Markov Model for Continuous Observations Processes
A Fast Solver for Henderson Mixed Model Equation via Row
Operations
hierarchical multinomial marginal models
Improved Analysis of Marine Animal Movement Data Using Hidden
Markov Models
Analysing accelerometer data using hidden Markov models
Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
Flux Estimation with Static Chamber Data
Pretty Time of Day
Group Association Test using a Hidden Markov Model
Hierarchical Non-Negative Matrix Factorization
Half-Normal Plots with Simulation Envelopes
Higher Order Likelihood Inference
Collect and Retrieve Annotation Data for Various Genomic Data
Using Different Webservices
Manage Cached Files
Higher-Order Generalized Singular Value Decomposition
Texas Holdem Simulator
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Gifi Methods for Optimal Scaling
Useful Functions for Building Physics
Doughnut Plots
Methods for Closed Testing with Simes Inequality, in Particular
Hommel's Method
Homomorphic Computations in R
Theoretical Model to Simulate Radical Polymerization
Homogeneity tests for Regional Frequency Analysis
Transmissions and Receptions in a Hop by Hop Network
Horizon Search Algorithm
Supplemental Functions and Datasets for "Handbook of Regression
Methods"
Horn's (1965) Test to Determine the Number of Components/Factors
Flexible Non-Linear Regression with the HorseRule Algorithm
Implementation of the Horseshoe Prior
Multiple Hot-Deck Imputation
Hot Deck Imputation Methods for Missing Data
Hotelling's T^2 Test and Variants
Software Hotspot Analysis
Hot spots
U.S. Housing Data from 2008 to 2016
A lower bound for the number of correct rejections
Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling
High Performance Cluster Models Based on Kiefer-Wolfowitz
Recursion
Functions for Plotting HPO Terms
Miscellaneous convenience functions and dataset
Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Additional Themes, Theme Components and Utilities for 'ggplot2'
High-Dimensional Repeated Measures
Health Related Quality of Life Analysis
Horizontal rule for the R language
Hierarchical Spatial Autoregressive Model
A Handbook of Statistical Analyses Using R (1st Edition)
A Handbook of Statistical Analyses Using R (2nd Edition)
A Handbook of Statistical Analyses Using R (3rd Edition)
Manage, Analyse and Simulate Hyperspectral Data
hierarchical Bayesian species distribution models
Canonical Correlation Analysis based on Kernel Independence
Measures
A Path-Based BCD for Proximal Function of Latent Group Lasso
Hidden Semi Markov Models
Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
Biclustering with Heterogeneous Variance
Horizontal Time Dependent Positioning
Convert Html into Text
Assemble Data Frames from HTML Tables
Advanced Tables for Markdown/HTML
Tidy Up and Test XPath Queries on HTML and XML Content
Tools for HTML
Facilitates Automated HTML Report Creation
HTML Widgets for R
Historical Tree Ensembles for Longitudinal Data
Hierarchical and Grouped Time Series
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
High Throughput Sequencing of Stable Isotope Probing Data
Analysis
High-Throughput Toxicokinetics
Query Cache for HTTP Clients
'HTTP' Status Code Helper
'Ping' 'URLs' to Time 'Requests'
Basic HTTP Request
A Test Environment for HTTP Requests
HTTP and WebSocket Server Library
Tools for Working with URLs and HTTP
Distinct Colours Palettes Based on 'iwanthue'
High-Dimensional Undirected Graph Estimation
compute HUM value and visualize ROC curves
Human-friendly formatting functions
A Parser for Human Names
Synthetic Population Generator
Simplify Analysis and Annotation of Human Microarray Datasets
An R Package for Calculating Water Vapor Measures from
Temperature and Relative Humidity
High-Performance Stemmer, Tokenizer, and Spell Checker
Hurricane Re-Analysis Project
Zero-Inflated and Hurdle Modelling Using Bayesian Inference
Explore and Map County-Level Hurricane Exposure in the United
States
Miscellaneous R Functions and Aliases
Simply Create LaTeX and HTML Tables
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
HTML Writer - Outputs R objects in HTML format
Tests of White Noise using Wavelets
Exact Tests for Hardy-Weinberg Proportions
Build, Deploy and Evaluate Hybrid Ensembles
A Hybrid Filter-Wrapper Feature Selection Method
Hybrid Hierarchical Clustering
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques
Stochastic Hybrid Models in Dynamic Networks
Hybrid Bayesian Networks Using R and JAGS
Tools and models for hydrological applications
Groundwater Data Presentation and Interpretation
Goodness-of-Fit Functions for Comparison of Simulated and
Observed Hydrological Time Series
Hydrologic Network Linking Data and Tools
R codes for estimating water retention and infiltration model
parameters using experimental data
Particle Swarm Optimisation, with focus on Environmental Models
Interface to Hydroscope
Hydrologic Indices for Daily Time Series Data
Time Series Management, Analysis and Interpolation for
Hydrological Modelling
Hydrology and Climate Forecasting
Generic N-Dimensional Hyperplane Fitting with Heteroscedastic
Covariant Errors and Intrinsic Scatter
The Hyperdirichlet Distribution, Mark 2
The hyperbolic distribution
Organizing Data in a Hypercube
Hypergeometric Tests
The Gauss Hypergeometric Function
Attribute Sampling Plan with Exact Hypergeometric Probabilities
using Chebyshev Polynomials
Hyper-Ensemble Smote Undersampled Random Forests
Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
High Dimensional Geometry and Set Operations Using Kernel
Density Estimation, Support Vector Machines, and Convex Hulls
Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation
Library
Macroevolutionary phylogentic analysis of species trees and gene
trees
Multi-Hypothesis CSV Parser
Confidence Intervals and Tests of Statistical Hypotheses
Wrapper for the 'Hypothes.is' Web Annotation Service
Hybrid Methods for Addressing Uncertainty in RISK Assessments
Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Hybrid Zone Analysis using R
Plotting N-T Plane for Decision on Performing an Interim
Analysis
Analysis of Intra Annual Density Fluctuations
Synthesizing Information Across Collaborating Research
Thermophysical Properties of Water and Steam
Model Selection for Index of Asymmetry Distribution
Cleaning and Visualizing Implicit Association Test (IAT) Data
Scoring Algorithm for the Implicit Association Test (IAT)
Implicit Association Test Scores Using Robust Statistics
Integrative Bayesian Analysis of Transcriptomic and CGH Data
INCOMPLETE BLOCK DESIGNS
Functions for the Analysis of IBD Haplo Output
Convert Between Different IBD-State Labelling Schemes
Regression Methods for IBD Linkage With Covariates
Simulation of Chromosomal Regions Shared by Family Members
Irregular-lattice based ensemble empirical mode decomposition
Belief Function Implementation
Approximation using the IBHM method
Individual Based Models in R
Toolkits to Develop Individual-Based Models in Infectious
Disease
IBM in-Database Analytics for R
Iboot: iterated bootstrap tests and confidence sets
Iterative Bias Reduction
R API to Interactive Brokers Trader Workstation
Improper Bagging Survival Tree
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
Inequality constrained inference in linear normal situations
A Copy Number and Expression-Based Classifier for Breast Tumours
Training datasets for iC10 package
Inequality and Concentration Indices and Curves
Standardized high-throughput evaluation of cell-based compound
screens
Independent Component Analysis
Imperialist Competitive Algorithm
Estimation of ICA Mixture Models
Independent Components Analysis (ICA) based artifact correction
Imperialist Competitive Algorithm for Optimal Designs
Mixed ICA/PCA
Calibrates and Reweights Units in Samples
Bayesian Semiparametric Models for Interval-Censored Data
Facilitating Estimation of the Intraclass Correlation
Coefficient
Calculation of Sample Size and Power for ICC
Cox Model with Interval-Censored Starting Time of a Covariate
Multilevel Model Intraclass Correlation for Slope Heterogeneity
Facilitates Clustered Binary Data Generation, and Estimation of
Intracluster Correlation Coefficient (ICC) for Binary Data
Tools for Working with ICD-9 and ICD-10 Codes, and Finding
Comorbidities
EM by the Method of Weights for Incomplete Categorical Data in
Generlized Linear Models
Iterated Conditional Expectation
Individual Conditional Expectation Plot Toolbox
Apply Statistical Post-Processing to Improve Sea Ice Predictions
Incremental Cost-Effectiveness (ICE) Statistical Inference from
Two Unbiased Samples
Regression Models for Interval Censored Data
Accompanion to the Book on Interval Censoring by Bogaerts,
Komarek, and Lesaffre
Study Design and Data Analysis in the Presence of Error-Prone
Diagnostic Tests and Self-Reported Outcomes
Functions Related to ICES Advice
DATRAS Trawl Database Web Services
Stock Assessment Graphs Database Web Services
Functions to Support the ICES Transparent Assessment Framework
ICES Vocabularies Database Web Services
Estimation of number of clusters and identification of atypical
units
Fit Generalized Odds Rate Hazards Model with Interval Censored
Data
A Button-Based GUI for Financial and Economic Data Analysis
Integrative clustering of multiple genomic data types
Empirical Bayes Variable Selection via ICM/M Algorithm
Global Triangular and Penta-Hexagonal Grids Based on Tessellated
Icosahedra
Reproducible Data Retrieval from the ICPSR Archive
Simultaneous Confidence Intervals for Ranks
A Modified Random Survival Forest Algorithm
Tools for Exploring Multivariate Data via ICS/ICA
Tools for Multivariate Nonparametrics
Outlier Detection Using Invariant Coordinate Selection
ICS via a Shiny Application
A package for semiparametric regression analysis of
interval-censored data
Inverse Compliance Score Weighting
Estimating and Testing the Number of Interesting Components in
Linear Dimension Reduction
Indirect Cross-Validation (ICV) for Kernel Density Estimation
Individual Diversity-Area Relationships
R debugger
R Interface to the US Census Bureau International Data Base API
Update Chinese ID Card Number to Eighteen Digits
Efficient Designs for Discrete Choice Experiments
Inference in Randomized Controlled Trials with Death and
Missingness
Interactive Dendrograms
Jacquard Condensed Coefficients of Identity
Various Methods for Estimating Intrinsic Dimension
Estimation and Plotting of IDF Curves
Integrative Differential Network Analysis in Genomics
Incremental Decomposition Methods
Intrinsic Dimension for Data Mining
Regression Model for Progressive Illness Death Data
Integrated Discovery of Oncogenic Signatures
Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Imprecise Dirichlet Process for Survival Analysis
Irreproducible discovery rate
Generate Random Identifiers
Estimate Global Clustering in Infectious Disease
Identify Turtles by their Plastral Biometries
R Analysis package for iDynoMiCS Simulation Results
Irucka Embry's Miscellaneous USGS Functions
Integrating External Controls into Association Test
Functions to set and get the IEEE rounding mode
Irucka Embry's Miscellaneous Functions
Irucka Embry's Miscellaneous Data Collection
Irucka Embry's Miscellaneous Text Collection
Independent Factor Analysis
An integrative factor analysis model for drug-pathway
association inference
Toolkit for Item Factor Analysis with 'OpenMx'
Italian Fiscal Code ('Codice Fiscale') Utilities
Identifying Functional Polymorphisms
Iterated Function Systems
Insightful Research Tools
Instagram 2014 Vancouver Top Colour Dataset
Statistical Tests and Utilities for Genetic Association
IGM MEA Analysis
Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic'
Data)
Interchangeable Gaussian Process Models
Network Analysis and Visualization
A Collection of Network Data Sets for the 'igraph' Package
Use 'shiny' to Demo 'igraph'
Convert iGraph graps to SoNIA .son files
Integrative Gene Set Enrichment Analysis Approaches
Interactive, Complex Heatmaps
Inverse Hyperbolic Sine Distribution
Inhomogeneous Self-Exciting Process
Datasets to Accompany Wolfe and Schneider - Intuitive
Introductory Statistics
Integrative Joint Random Forest
TIFF I/O for 'ImageJ' Users
Consistency, Homogeneity and Summary Statistics of
Climatological Data
Improved Laplace Approximation for Integrals of Unimodal
Functions
Lee-Carter Mortality Models using Iterative Fitting Algorithms
Interlaboratory Study
Orthogonal Moment Analysis
Aids in Processing and Plotting Data from a Lemna-Tec
Scananalyzer
Image Processing Library Based on 'CImg'
Simulate General Insurance Policies and Losses
IMAGing engINE, Tools for Application of Image Filters to Data
Matrices
Delimit and Characterize Color Phenotype of the Pearl Oyster
Item Maker
Interactive Mapping
Preprocessing Algorithms for Imbalanced Datasets
Likelihood Methods for Mediation Analysis
Send 'iMessages' from R
R Interface for International Monetary Fund(IMF) Data API
Download Data from the International Monetary Fund's Data API
An Imgur.com API Client Package
Fitting, Diagnostics, and Plotting Functions for Infinite
Mixtures of Infinite Factor Analysers and Related Models
Increamental Mixture Importance Sampling
Item Response Models for Multiple Ratings
Interactive Model Performance Evaluation
Imputation for Proteomics
The Impact of Items
Identifying Causal Effect for Multi-Component Intervention Using
Instrumental Variable Method
R Interface for Apache Impala
Imprecise Inference for Poisson Sampling Models
An Import Mechanism for R
Enables Importing/Loading of Packages or Functions While
Creating an Alias for Them
Import and Export Data
Minimum distance estimation in an imprecise probability model
A collection of methods for left-censored missing data
imputation
The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Impute Missing Values in a Predictive Context
Imputation Methods for Multivariate Multinomial Data
Impute Missing Data in Time Series Data with PSF Based Method
A General Imputation Framework in R
Robust Multiple Imputation with Generalized Additive Models for
Location Scale and Shape
Test Bench for the Comparison of Imputation Methods
Time Series Missing Value Imputation
Imputing the Last Largest Censored Observation(s) Under Weighted
Least Squares
Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and
Other Metrics)
Information Matrix Test for Generalized Partial Credit Models
Into the extRemes Package
Initialization Algorithms for Partitioning Cluster Analysis
Mixture models for longitudinal count data
Analysing Inbreeding Based on Genetic Markers
Integer Calibration
Recognize and Handle Data in Formats Used by Swedish Cancer
Centers
Internal Control Analysis of Translatome Studies by Microarrays
Incremental Calculation of Dynamic Time Warping
Incremental Graphlet Counting for Network Optimisation
Compute, Handle, Plot and Model Incidence of Dated Events
Analysis of Incubation Data
Incidence Estimation Tools
Dose Response Curves from Incucyte Proliferation Assays
Insertion Deletion Analysis While Accounting for Possible
Missing Data
Nonparametric tests of independence between random vectors
Nonparametric Independence Tests Based on Entropy Estimation
Indian Income Tax Calculator
Relationship Between Species and Groups of Sites
Tests of Independence Between Point Processes in Time
Integrate INEGI’s (Mexican Stats Office) API with R
Measuring Inequality, Concentration, and Poverty
Interpolation and Extrapolation for Species Diversity
Interpolation and Extrapolation for Phylogenetic Diversity
Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories
Tidy Statistical Inference
Functions to extract inferential values of a fitted model object
Inference about the standardized mortality ratio when evaluating
the effect of a screening program on survival
Methods for Causal Inference with Interference
Inferential Statistics
Estimate and Account for Tumor Purity in Cancer Methylation Data
Analysis
Core Inflation
Finds the Inflection Point of a Curve
Tools for Detecting Influential Data in Mixed Effects Models
Case Influence in Structural Equation Models
Software Tools to Quantify Structural Importance of Nodes in a
Network
R Interface to InfluxDB
Information Decomposition of Two-Phase Experiments
Data Exploration with Information Theory (Weight-of-Evidence and
Information Value)
Performance Analysis and Companion Functions for Binary
Classification Models
Multiple Imputation for Informative Censoring
Sequence Statistics for Relational Event Models
Information-Theoretic Measures
Calculates the Probability of Informed Trading (PIN)
An Infrastructure Proxy Function
IO Help for infraFDTD Model
A Very Basic Templating Engine
Inference Using Simulation
Information Utility
Read and Write '.ini' Files
R Dependency Injection
Bayesian Model Averaging with INLA
Spatial Inference using Integrated Nested Laplace Approximation
Utility Functions for 'INLA'
Functions to Inline C, C++, Fortran Function Calls from R
Convert inline comments to documentation
Miscellaneous Functions for the USGS INL Project Office
Integrative Network Omnibus Total Effect Test
Analyse Text Documents Using Ecological Tools
Inference Tests for ExPosition
insideRODE includes buildin functions with deSolve solver and
C/FORTRAN interfaces to nlme, together with compiled codes
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Solar Radiation
High-Dimensional Changepoint Estimation via Sparse Projection
Perform Basic Checks of Dataframes
Inferring Shared Modules from Multiple Gene Expression Datasets
with Partially Overlapping Gene Sets
Check, Install and Load CRAN & USGS GRAN Packages
Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio',
'Git', and More!)
Access to Instagram API via R
A Collection of Insurance Datasets Useful in Risk Classification
in Non-life Insurance
Procedures for Automated Interpolation
procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Semiparametric Competing Risks Regression under Interval
Censoring
Integrated Data Analysis via Clustering
Integrating Multiple Modalities of High Throughput Assays Using
Item Response Theory
Integration for B-Spline
Joint Modeling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Integrated Prediction using Uni-Variate and Multivariate Random
Forests
Tests for marginal interactions in a 2 class response model
Calculates Critical Test Statistics to Control False Discovery
and Familywise Error Rates in Marginal Effects Plots
interactive network analysis and visualization
interAdapt
Compute Chi-Square Measures with Corrections
Cure Rate Estimators for Interval Censored Data
GUI to Analyse qPCR Results after PMA Treatment or not
Exact Confidence Intervals in the Presence of Interference
Multiplicative Interaction Models Diagnostics and Visualization
Interference Color Charts for Polarized Light Microscopy
Coercion Routines for Network Data Objects
Scheduling Interim Analyses in Clinical Trials
An API Client for the Internet Archive
Interpolation Methods
Plot the Effects of Variables in Interaction Terms
Interpolation of amino acid sequences
Hourly interpolation of multiple temperature daily series
Interpreting High Resolution Mass Spectra
Binary Classifier and Regression Model Interpretation Functions
Simulation of Inter-Related Genomic Datasets
Replicate and Analyse 'InterVA4'
Weighted Logrank Tests and NPMLE for interval censored data
Tools for Working with Points and Intervals
Interventional Inference for Dynamic Bayesian Networks
Numerical Integration for Integrated Likelihood
Integrative Clustering of Multiple Genomic Dataset
linear programming solver by the interior point method and
graphically (two dimensions)
Interpret Tree Ensembles
Interval Regression
Integrated Regression Goodness of Fit
Intrinsic Dimension Estimation
methods for analyzing introgression between divergent lineages
Relational Operators for Intervals
Analysis of Time-Ordered Event Data with Missed Observations
International Assessment Data Manager
Interface to Popular R Functions for Data Science Pipelines
Interval and Enum-Type Representation of Vectors
Invariant Causal Prediction
Invasion Correction
Inventory Models
Inverse Estimation/Calibration Functions
The Inverse Gamma Distribution
Threshold regression that fits the (randomized drift) inverse
Gaussian distribution to survival data
Inversion of Laplace-Transformed Functions
A Unified Framework for Input-Output Operations in R
Calling Copy Number Alterations in Amplicon Sequencing Data
Calculate the Number of Required Flows for Semiconductor
Sequencing
'Ionicons' Icon Pack
Test for Indifference of Indicator
Methods for Industrial/Organizational Psychology
Functions for Smoothing with Infinite Order Flat-Top Kernels
I/O Tools for Streaming
Tools for subgroup analyses with multiple trial data using
aggregate statistics
Spatial Interpolation by Inverse Path Distance Weighting
Root Mean Square Curvature Calculation
Integrative Lasso with Penalty Factors
Fast Implementation of the Iterative Proportional Fitting
Procedure in C
Indoor Positioning Fingerprinting Toolset
iPlots - interactive graphics for R
Builds and analyses Integral Projection Models (IPMs)
Intervention in Prediction Measure (IPM) for Random Forests
Improved Predictors
Regression Modelling using I-Priors
Interfaces to Phylogenetic Software in R
Convert IP Addresses to Country Names or Full Location with
Geoplotting
Manipulate, Validate and Resolve 'IP' Addresses
Read 'IPUMS' Extract Files
Estimate Inverse Probability Weights
Propensity Score Based Adjusted Survival Curves and
Corresponding Log-Rank Statistic
Improved Quality Control Charts
Interactive Q-Learning
Inverse Molecular Design
Iterated Racing for Automatic Algorithm Configuration
Integrative Random Forest for Gene Regulatory Network Inference
A R Interface for the Instantaneous RATEs (IRATE) Model
Correlation Coefficients for Information Retrieval
'Jupyter' Display Machinery
iRefIndex Manager
Regression Methods for Interval-Valued Variables
Reproducibility for Interval-Censored Data
iterative Random Forests
Irish Companies' Boards from 2003 to 2013
Statistics and Metrics for Seismic Data
Classes and Methods for Seismic Data Analysis
Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Various Coefficients of Interrater Reliability and Agreement
Item Response Theory Demo Collection
A Collection of Functions Related to Item Response Theory (IRT)
Estimating IRT Parameters using the IRT Methodology
Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models
Estimation of Tree-Based Item Response Models
Item Response Theory via Shiny
The Iterative Signature Algorithm
Iterative Selection of Blocks of Features - ISBF
interval symbolic data analysis for R
Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences
Invasive Species Distribution Modelling
Parse 'NOAA' Integrated Surface Data Files
Fitting Ising Models Using the ELasso Method
Monte Carlo for Classical Ising Model
Sampling Methods and Distribution Functions for the Ising Model
Stochastic Island Biogeography Theory Made Easy
Data for an Introduction to Statistical Learning with
Applications in R
Interpretive Structural Modelling (ISM)
An Introduction to Statistical Modeling of Extreme Values
Check if an 'externalptr' is a Null Pointer
Functions to Perform Isotonic Regression
Confidence intervals for current status data based on
transformations and bootstrap
Isotonic Inference for Circular Data
Selected ISO Codes
Order-Restricted Inference for Microarray Experiments
Isopam (Clustering)
Calculation of isotopic pattern for a given molecular formula
Isotonic Proportional Hazards Model
Statistical Toolbox for Radiometric Geochronology
Deconvolution of Tumour Profiles
Isoscape Computation and Inference of Spatial Origins using
Mixed Models
The IsoSpec Algorithm
Active Set and Generalized PAVA for Isotone Optimization
Penalized Isotonic Regression in one and two dimensions
Stable Isotope Mixing Model
Week of the year and weekday according to ISO 8601
Iterative Sequential Regression
Create Reports from GitHub Issues
Independent Surrogate Variable Analysis
Introductory Statistics with R
The Italian Survey on Household and Wealth, 2008 and 2010
Item Analysis for Multiple Choice Tests
Individual Tree Crowns Segmentation
Parametric rate comparison
Provides Iterator Construct for R
Approximate Probability Densities by Iterated Laplace
Approximations
Efficient Iterator for Permutations and Combinations
Iterator Tools
itertools2: Functions creating iterators for efficient looping
Individual Tree Growth Modeling
Tools for classification and regression trees, with an emphasis
on interpretability
Interpreting Time Series and Autocorrelated Data Using GAMMs
Time Series Analysis Using the Innovations Algorithm
To Access iTunes App Store Ratings and Reviews using R
Incorporating Uncertainties in Propensity Scores
Bayesian Instrumental Variable Estimation and Model
Determination via Conditional Bayes Factors
Instrumental fixed effect panel data model
Uses heteroscedasticity to estimate mismeasured and endogenous
regressor models
Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Instrumental Variable Estimation
Instrumental Panel Data Models
Instrumental variables probit model
Create Independent Evidence in IV Analyses and Do Sensitivity
Analysis in Regression and IV Analysis
Improved methods for causal inference and missing data problems
Wavelet-Based Index of Storm Activity
Simulation-Based Maximum Likelihood Parameter Estimation
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
Statistical Inference of Variables Driving Systematic Variation
Classical Jacobi Eigensolution Algorithm
Jaccard Index for Population Structure Identification
Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Analysis Tools for the 'JAMES' Framework
Jane Austen's Complete Novels
Simple Tools for Examining and Cleaning Dirty Data
Directory of Open Access Journals Client
R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices
Java Graphics Device
Misc Small Tools and Helper Functions for Other Code of J.
Buttlar
Colors Palettes for R and 'ggplot2', Additional Themes for
'ggplot2'
Monte Carlo Option Pricing Algorithm for Jump Diffusion Model
with Correlation Companies
'Java' Data Exchange for 'R' and 'rJava'
One-to-One Gene-Probeset Mapping for Affymetrix Human
Microarrays
A Menu-Driven GUI for Analyzing and Modelling Data of Just
Finance and Econometrics
Joint Generalized Estimating Equation Solver
Performs the Joint Graphical Lasso for sparse inverse covariance
estimation on multiple classes
Java GUI for R
Chinese Text Segmentation
Chinese Text Segmentation Data for jiebaR Package
Joint Modeling of Longitudinal and Survival Data
Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Joint Mean-Covariance Models using 'Armadillo' and S4
Joint Models for Longitudinal Measurements and Competing Risks
Failure Time Data
Joint Modeling of Longitudinal and Survival Data - Power
Calculation
Tools for Interacting with 'jMetrik'
Julian Miscellaneous Function
Time Series Analysis Toolkit Based on Symbolic Aggregate
Dicretization, i.e. SAX
Permutation Tests for Nonparametric Statistics
The 'jamovi' Analyses
Dependencies for the 'jamovi' Framework
Joint Confidence Regions
Johnson Transformation
Joint Modelling of Repeated Measurements and Time-to-Event Data
Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Joint Approximate Diagonalization of a Set of Square Matrices
Semiparametric Joint Models for Longitudinal and Counting
Processes
Joint N-Mixture Models for Site-Associated Species
Risk estimation using the joint probability method
Joint Modelling of Mixed Correlated Binary and Continuous
Responses : A Latent Variable Approach
Joint Segmentation of Multivariate (Copy Number) Signals
Perform Joins or Minus Queries on 'Excel' Files
Multilevel Joint Modelling Multiple Imputation
Joint Optimization Plot
Functions for some Unit-Level Small Area Estimators and their
Variances
Javascript Object Signing and Encryption
Implements Under/Oversampling for Probability Estimation
Read and write JPEG images
Covariance and Inverse Covariance Matrix Estimation Using Joint
Penalty
Utilities for Japanese Mesh Code
Create Japanese Administration Area and Office Maps
Methods for population-based cancer survival analysis
Client for 'jq', a 'JSON' Processor
Joint Random Forest (JRF) for the Simultaneous Estimation of
Multiple Related Networks
Jack-Knife Support for Evolutionary Distinctiveness Indices I
and W
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
Tools for Working with JavaScript in R
Semiparametric Joint Modeling of Survival and Longitudinal Data
jSonar Analytics Platform API for R
JSON for Linking Data
A Robust, High Performance JSON Parser and Generator for R
Validate 'JSON'
Create Interactive Trees with the 'jQuery' 'jsTree' Plugin
Efficient Jonckheere-Terpstra Test Statistics
Analysis and Presentation of Social Scientific Data
Johnson Transformation for Normality
A Simple Web Framework for R
Fractal Image Data Generator
Seamless Integration Between R and 'Julia'
Financial Jump Detection
Kernel for 'Jupyter'
Access Open Data Through the 'Junar' API
Value at Risk
Miscellaneous Utilities and Functions
Tools for Data Manipulation and Testing
Construct Complex Table with 'kable' and Pipe Syntax
Kernel Adaptive Density Estimation and Regression
Methods for Clustering Mixed-Type Data
Kernel Approaches for Nonlinear Genetic Association Regression
Package to identify and sort genes overexpressed
Kantorovich Distance Between Probability Measures
Test the Homogeneity of Kappa Statistics
GUI for Cohen's and Fleiss' Kappa
Non-Additive Measure and Integral Manipulation Functions
Sample Size Estimation Functions for Studies of Interobserver
Agreement
Calculates "vectorial Kappa", an index of congruence between
patchy mosaics
K-Adaptive Partitioning for Survival data
Remove Vocals from a Song
An Interface for Karstic Time Series
Kinetic analysis and visualization of DCE-MRI data
Tools for Tall Distributed Matrices
k-Cube Thurstonian IRT Models
Kernel Smoothing for Bivariate Copula Densities
Nonparametric method for identifying discordant phylogenetic
trees
Multivariate Kernel Density Estimation with Vine Copulas
Kernel Estimator and Bandwidth Selection for Density and Its
Derivatives
Arrays with Better Control over Dimension Dropping
Collect, Assemble and Model Air Pollution, Weather and Health
Data
Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Kendall rank correlation and Mann-Kendall trend test
Kernel-Smoothed Nonparametric Methods for Environmental Exposure
Data Subject to Detection Limits
Knowledge Synthesis in Agriculture - From Experimental Network
to Meta-Analysis
The Kernel Method of Test Equating
R Interface to 'Keras'
A High-Level R Interface for Neural Nets
R Interface to the Keras Deep Learning Library
Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions
Expectile Regression in Reproducing Kernel Hilbert Space
Gaussian Process Laboratory
Kernel Deep Stacking Networks
Distance Weighted Discrimination (DWD) and Kernel Methods
Smoothed Bootstrap and Random Generation from Kernel Densities
Kernel Factory: An Ensemble of Kernel Machines
Kernel Density Estimation for Heaped and Rounded Data
Kernel k Nearest Neighbors
Kernel-Based Machine Learning Lab
A Kernel Regression-Based Multidimensional Wind Turbine Power
Curve
Kernel Machine Score Test for Semi-Competing Risks
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Nonparametric Item Response Theory
Matrix Exponential using Krylov Subspace Routines
Store Data About Rows
Locating Key Players in Social Networks
Wait for a Key Press in a Terminal
Access the System Credential Store from R
Decrypt Passwords from Gnome Keyring, Windows Data Protection
API and macOS Keychain
Kalman Filter and Smoother for Exponential Family State Space
Models
Kernel Fisher Discriminant Analysis
Integrated Code Chunk Anchoring and Referencing for R Markdown
Documents
Kalman Filter, Smoother and Disturbance Smoother
Koeppen-Geiger Climatic Zones
Kernel Based Gradient Matching for Parameter Inference in
Ordinary Differential Equations
KGS Rank Graph Parser
Kirill's Miscellaneous Functions
Analysis of Kin-Cohort Studies
Framework for the Analysis of Kinetic Visual Field Data
Routines for Fitting Kinetic Models to Chemical Degradation Data
Pedigree Functions
Example Data from the Multi-Modal MRI 'Reproducibility' Resource
Example Functional Imaging Data from the Multi-Modal MRI
Reproducibility Resource
Example T1 Structural Data from the Multi-Modal MRI
Reproducibility Resource
a Keep It Simple Species Migration Model
Spectral response of water wells to harmonic strain and pressure
Weighted k-Nearest Neighbors
Classification and visualization
Multiple Choice Test Evaluation
Linear equations with Kronecker structure
Confidence intervals for the Kaplan-Meier estimator
Kaplan-Meier Estimator with Constraints for Right Censored Data
-- a Recursive Computational Algorithm
Kaplan-Meier Simultaneous Confidence Band for the Survivor
Function
'Yinyang' K-Means and K-NN using NVIDIA CUDA
Kernel-Based Metabolite Differential Analysis
Distributed k-Means for Big Data using 'ddR' API
Gene-Based Association Analysis for Complex Traits
Kaplan-Meier Multiple Imputation for the Analysis of Cumulative
Incidence Functions in the Competing Risks Setting
Kevin Miscellaneous
K-Means for Longitudinal Data
K-Means for Joint Longitudinal Data
Clustering longitudinal data using the likelihood as a metric of
distance
K-Means for Longitudinal Data using Shape-Respecting Distance
K-Means with Simultaneous Outlier Detection
Data sets from Klein and Moeschberger (1997), Survival Analysis
Generate Feasible Samples of a Knapsack Problem
Citations for 'Knitr' Markdown Files
'Knitr' Helpers - Mostly Tables
A General-Purpose Package for Dynamic Report Generation in R
'knitr' Bootstrap Framework
Nearest-neighbor Classification with Categorical Variables
Multi-distance based k-Nearest Neighbors
Independence tests and benchmarks
The Knockoff Filter for Controlled Variable Selection
Interface to the Knoema API
Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means
Knot Diagrams using Bezier Curves
Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
R Client for 'kintone' API
Tools for the provision of scientific fisheries management
advice
Knowledge Discovery by Accuracy Maximization
Get Data from the 'KOF Datenservice' API
A Genetic Algorithm for Fixed-Size Subset Selection
Functional Summary and Meta-Analysis of Gene Expression Data
Supervised and Unsupervised Self-Organising Maps
R Interface to 'Kokudo Suuchi' API
An Improved Evaluation of Kolmogorov's Distribution
R Markdown Templates for the 'KOMA-Script' Classes
Korean NLP Package
An R Package for Text Analysis
Koul's Minimum Distance Estimation in Linear Regression and
Autoregression Model by Coordinate Descent Algorithm
Cubic Spline Fitting with Knot Selection
Kernel PC Algorithm for Causal Structure Detection
Determination of K Using Peak Counts of Features for Clustering
Known Population Median Test
Method for Clustering Partially Observed Data
A Quantified Implementation of the Kraljic Matrix
Continuation Passing Style Development
Ordinary Kriging
Kriging-based Inversion for Deterministic and Noisy Computer
Experiments
Kernel-Based Regularized Least Squares
Kernel Based Regression Models
Kernel Ridge Mixed Model
Kernel Smoothing
K-Sample Rank Tests and their Combinations
A Bayesian Approach for Protein Residue Contact Prediction using
the Knob-Socket Model of Protein Tertiary Structure
Lilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests
Goodness-of-Fit Tests using Kernelized Stein Discrepancy
Kinase-Substrate Enrichment Analysis
Selection of K in K-Means Clustering
Computing P-Values of the K-S Test for (Dis)Continuous Null
Distribution
Identify Kinase Substrate Relationships Using Dynamic Data
Knowledge Space Theory
Knowledge Space Theory Input/Output
Co-Tucker3 Analysis of Two Sequences of Matrices
Configurable function for solving families of nonlinear
equations
k-Top Scoring Pairs for Microarray Classification
Datasets and functions from the (now non-existing) Faculty of
Life Sciences, University of Copenhagen
Project Management Tools
Read/Write Files in Key-Value-Hierarchy Format
Calculation of Groundwater Mounding Beneath an Infiltration
Basin
Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Kolmogorov-Zurbenko Adaptive Filters
Multi-Scale Motions Separation with Kolmogorov-Zurbenko
Periodogram Signals
Kolmogorov-Zurbenko Fourier Transform and Applications
Kolmogorov-Zurbenko Spatial Smoothing and Applications
Sparse Generalized Linear Model with L0 Approximation for
Feature Selection
Deconvolution for LINCS L1000 Data
Routines for L1 Estimation
Friedman's Boosting Algorithm for Regularized Linear Regression
Ordination and Multivariate Analysis for Ecology
Relabelling MCMC Outputs of Mixture Models
Labeled Loop
Axis Labeling
Manipulating Labelled Data
Predicting Rankings of Labels
Label Attributes for Atomic Vectors
Identification, Tuning, Visualisation and Analysis of Labour
Market Areas
Libreria Del Laboratorio Di Statistica Con R
Data Sets for the Book "Experimental Design for Laboratory
Biologists"
Estimation of indicators on social exclusion and poverty
Duncan test, Tukey test and Scott-Knott test
Fast Access to Large ASCII Files
Classes and Methods for Lagged Objects
Interface to the Lake Multi-Scaled Geospatial and Temporal
Database
Local Approximate Gaussian Process Regression
Spatial Lag Model Trees
Sean 'Lahman' Baseball Database
Tools for the Analysis of Ecosystem Metabolism
Lake Morphometry Metrics in R
Lake Temperatures Collected by Situ and Satellite Methods from
1985-2009
Some Latent Variable Models
Modeling Data with Functional Programming
Tools for Modeling Data with Functional Programming
Collection of Internal Consistency Reliability Coefficients
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Lambert-W Function
Liquid Association for Network Dynamics Detection
Landmark Estimation of Survival and Treatment Effect
Landmark Prediction of a Survival Outcome
Radiometric and topographic correction of satellite imagery
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or
Temperature
Categorical Landscape Simulation Facility
Langevin Analysis in One and Two Dimensions
Access the 'languagelayer' API
Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics"
Work with Look at NanoSIMS Data in R
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced
Observations on a Finite Time Interval
Complete Environment for Bayesian Inference
History of labour relations package
Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Serialization Interface for Large List Objects
High-Quality Visualizations of Large, High-Dimensional Datasets
Least Angle Regression, Lasso and Forward Stagewise
L1 constrained estimation aka `lasso'
Modelling Interactions in High-Dimensional Data with
Backtracking
Nonparametric P-Value Estimation for Predictors in Lasso
High-Dimensional Inference with the Penalized Score Test
L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Sparsed Sliced Inverse Regression via Lasso
A Simple Wrapper for the LASVM Solver
Draws Diagrams Useful for Checking Latent Scales
Latent Position and Cluster Models for Statistical Networks
Utilities for Delaying Function Execution
Functions to Calculate Common Laterality Statistics in
Primatology
Use LaTeX Expressions in Plots
Convert Tables to PDF or PNG
Trellis Graphics for R
Density estimation and nonparametric regression on irregular
regions
Extra Graphical Utilities Based on Lattice
Multiresolution Kriging Based on Markov Random Fields
Latent Variable Models
Latent Variable Models with Censored and Binary Outcomes
Latent Variable Analysis
Latent Variable Analysis with Shiny
Complex Survey Structural Equation Modeling (SEM)
Path Diagrams for Lavaan Models via DiagrammeR
Client for 'Turfjs' for 'Geospatial' Analysis
Tools for Biostatistics, Public Policy, and Law
Lazy Learning for Local Regression
A LazyData Facility
Lazy (Non-Standard) Evaluation
Render R Markdown Outputs Lazily
Lazy SQL Programming
LaTeX Wrappers for R Users
Latent Budget Analysis for Compositional Data
Limited-memory BFGS Optimization
Limited Memory BFGS Minimizer with Bounds on Parameters
Length-biased correction to survival curve estimation
Log-Binomial Regression with Constrained Optimization
Length-Based Spawning Potential Ratio
Localised Co-Dependency Analysis
Latent Class Analysis (LCA) with familial dependence in extended
pedigrees
Variable Selection for Latent Class Analysis
Latent Class Discriminant Analysis
Linear Combination Fitting
Data sets for package ``LMERConvenienceFunctions''
Efficient Estimation of Discrete-Time Multivariate Frailty Model
Using Exact Likelihood Function for Grouped Survival Data
Bayesian Non-Parametric Latent-Class Capture-Recapture
Extended Mixed Models Using Latent Classes and Latent Processes
Liouville Copulas
A Tool for Selecting Genes Related to Survival Outcomes using
Longitudinal Gene Expression Data
Local Correlation, Spatial Inequalities, Geographically Weighted
Regression and Other Tools
Stock Data Analysis Functions
Collapsed Gibbs Sampling Methods for Topic Models
Selection of Statistically Similar Research Groups
Large Data Sets
Tuning of the Latent Dirichlet Allocation Models Parameters
Interactive Visualization of Topic Models
Local Density-Based Outlier Detection
Lan-DeMets Method for Group Sequential Boundaries
Linkage Disequilibrium Corrected by the Structure and the
Relatedness
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Hidden Markov Model for Financial Time-Series Based on Lambda
Distribution
LD LASSO Regression for SNP Association Study
Finding Locally D-optimal optimal designs for some nonlinear and
generalized linear models
Probability of Default Calibration
Methods for likelihood-based dimension reduction in regression
Tools for Linear Dimension Reduction
Linear Dependence Statistics for High-Dimensional Data
Exact tests for Linkage Disequilibrium and Hardy-Weinberg
Equilibrium
The Artificial Neural Networks Algorithm Leabra
Leader Clustering Algorithm
Analysis and Visualization of Plant Leaf Angle Distributions
Rapid Digital Image Analysis of Leaf Area
Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
'ESRI' Bindings for the 'leaflet' Package
Extra Functionality for 'leaflet' Package
Mini Charts for Interactive Maps
An R Gallery for China and Other Geojson Choropleth Map in
Leaflet
Interactive Web-Maps Based on the Leaflet JavaScript Library
Silhouette to Area Ratio of Tilted Surfaces
Finds "Local Subnetworks" Within an Interaction Network which
Show Enrichment for Differentially Expressed Genes
Constructing Gene Co-Expression Networks for Single-Cell
RNA-Sequencing Data Using Pseudotime Ordering
Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
latent effect adjustment after primary projection
Regression Subset Selection
Border and Area Estimation of Data Measured with Additive Error
Functions for Learning Bayesian Inference
Learning Plane Geometry
An Implementation of Crawford's and Wright's Learning Curve
Production Functions
Data and functions to accompany the book "Learning R"
Examples of Neural Networks
Interactive Tutorials for R
Datasets for Aphalo's "Learn R" Book
An Interactive Environment for Learning Statistics
Phylogenetic and Functional Analyses for Ecology
Latent Environmental & Genetic InTeraction (LEGIT) Model
Bivariate Linear Errors-In-Variables Estimation
Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(french)
Freshing Up your 'ggplot2' Plots
A Lending Club API Wrapper
Generate 'Lero Lero' Quotes
Less Code, More Results
A package for LEarning STATistics
Tools for Data Handling and Analysis in Macroecology
Utilities for Formatting Strings with Consistent Capitalization,
Word Breaks and White Space
Lexicons for Text Analysis
Lexicons for Portuguese Text Analysis
Plot Lexis Diagrams for Demographic Purposes
Extractive Summarization of Text with the LexRank Algorithm
Factors with Levels
Local Fisher Discriminant Analysis
Estimation of the Local False Discovery Rates by Type II Maximum
Likelihood Estimation
Estimating Local False Discovery Rates Using Empirical Bayes
Methods
Linear Group Fixed Effects
Linguistic Fuzzy Logic
Calculation of Low Flow Statistics for Daily Stream Flow Data
Locally Gaussian Distributions: Estimation and Methods
Tools for linear grouping analysis (LGA)
Simulation and Estimation of Log-GARCH Models
Log-Gaussian Cox Process
Tests for Genetic Association/Gene-Environment Interaction in
Longitudinal Studies
Set-Based Tests for Genetic Association in Longitudinal Studies
A Set of Methods for Longitudinal Data Objects
Fit Sex-Specific Life History Models with Missing
Classifications
Latin Hypercube Samples
Computational Routines for Proton and Ion Radiotherapy
Linear Test Statistics for Permutation Inference
Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library
Linear Classification with Online Adaptation of Coordinate
Frequencies
Linearized Bregman Algorithms for Generalized Linear Models
Read, Create and Write 'PharmML' Standard Output (so) XML Files
Fast and Accurate Evaluation, Random Number Generation and
Parameter Estimation of Skew Stable Distributions
Light Cone Reconstruction of States - Predictive State
Estimation From Spatio-Temporal Data
Sensitivity Analysis for Case Weight in Normal Linear Regression
Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Financial and Actuarial Mathematics for Life Contingencies
Quantification of Lifecourse Fluidity
Life History Models of Individuals
Life Logging
Two-Parameter HMD Model Life Table System
Compute the Top Decile Lift and Plot the Lift Curve
Wavelet Lifting Estimators of the Hurst Exponent for Regularly
and Irregularly Sampled Time Series
Containerize R Markdown Documents
Tools for Communication with Lightning-Viz Server
Implementation of the 'Lights Out' Puzzle Game
Poisson Subordinated Distribution
Methods for Maximum Likelihood Estimation
Functions for Likelihood Asymptotics
Likelihood Exploration
Tools to Evaluate DNA Profile Evidence
Analysis and Visualization Likert Items
Linear Inverse Model examples and solution methods
Local Interpretable Model-Agnostic Explanations
Jitter/CI Plot with Ordered Points Below the Limit of Detection
Solving Linear Inverse Models
Binning and Plotting of Linearly Referenced Data
Static Univariate Frequentist and Bayesian Linear Calibration
Functions to Explore L-Systems (Lindenmayer Systems)
Automated Linear Regression Diagnostic
The Lindley Distribution and Its Modifications
Manipulate Formulas and Evaluate Marginal Effects
Linearized Support Vector Regression
Minimum Distance Estimation in Linear Regression Model
Line Maps
Linear Excess Relative Risk Model
Lining Up Two Sets of Measurements
Linguistic Typology and Mapping
Linking GIS, Remote Sensing and Other Command Line Tools
Plot Linkage Group Maps with Quantitative Trait Loci
Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Column-Linked and Row-Linked Matrices
Linkage information based genotype imputation method
3D Lever and Linkage Mechanism Modeling
'linl' is not 'Letter'
linear Likelihood-based Imprecise Regression
Linear Programming / Optimization
Interactive Interpretation of Linear Regression Models
Selection of Linear Estimators
Manipulation of Linear Systems of (in)Equalities
A 'Linter' for R Code
Implements Queue, PriorityQueue and Stack Classes
A Fast and Versatile SVM Package
LInear Regression in Astronomy
Fitting lasso penalised additive isotone models
List-processing à la SRFI-1
Import output from LISREL into R
Statistical Methods for the Item Count Technique and List
Experiment
List-Based Rules for Dynamic Treatment Regimes
Environments Behaving (Almost) as Lists
Tests of independence based on the Longest Increasing
Subsequence
Convert Lists to Tidy Data Frames
'htmlwidget' for Interactive Views of R Lists
List with Defaults
Lightweight Portable Message Queue Using 'SQLite'
R at the Command-Line via 'r'
Liu Regression with Liu Biasing Parameters and Statistics
R Wrapper for LiveChat REST API
Logistic Joinpoint Regression
Leveraging Learning to Automatically Manage Algorithms
Locally linear embedding
Local Log-linear Models for Capture-Recapture
The L-Logistic Distribution
Data Analysis of Liquid-Liquid Systems
Add Standardized Regression Coefficients to lm-Objects
Linear Model with Breakpoint
Linear Mixed-Effects Models using 'Eigen' and S4
Linear Mixed-Effects Models with Censored Responses
Linear Mixed Effects Models for Genome-Wide Association Studies
Linear Mixed Effects Models for QTL Mapping for Multienvironment
and Multitrait Analysis
Compute the Personalized Activity Index Based on a Negative
Binomial Model
Compute the Personalized Activity Index Based on a Flexible
Bayesian Negative Binomial Model
Linear Mixed Effects Models with Non-Stationary Stochastic
Processes
Model Selection and Post-hoc Analysis for (G)LMER Models
Bootstrap Methods for Nested Linear Mixed-Effects Models
Tests in Linear Mixed Effects Models
Add smoothing spline modelling capability to nlme
Latent Markov Models with and without Covariates
Functions for estimation and inference of selection in
age-structured populations
Filter Methods for Parameter Estimation in Linear Regression
Models
Functions for Forest Biometrics
Linear Mixed Models
Linear Mixed Model Elastic Net
Linear mixed-effects models with Lasso
Multiple Ordinal Tobit (MOT) Model
Parallel Linear Mixed Model
Linear Mixed Effect Model Splines for Modelling and Analysis of
Time Course Data
Model II Regression
L-Moments
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
L-Moments and Quantile Mixtures
(Precipitation) Frequency Analysis and Variability with
L-Moments from 'lmom'
Regional Frequency Analysis using L-Moments
Permutation Tests for Linear Models
Linear Ridge Regression with Ridge Penalty and Ridge Statistics
Support for Linear Models
Testing Linear Regression Models
Linear Regression with Non-Constant Variances
Long Non-Coding RNA Identification Based on Features of
Sequence, EIIP and Secondary Structure
Predicting Modulator and Functional/Survival Analysis
Identifying the Pathways Regulated by LncRNA Sets of Interest
Prioritizing Candidate LncRNAs Based on a Composite Multi-Level
Network
LogNormal Response Time Item Response Theory Models
Lattice Options and Add-Ins
Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Local Depth
Estimating Local Gaussian Parameters
R API to LocalSolver
Computes Local False Discovery Rates
Functions for Performing Local FDR Estimation when Null and
Alternative are Poisson
Local Regression, Likelihood and Density Estimation
Test of Stationarity and Localized Autocovariance
Datasets for "Statistics: UnLocking the Power of Data"
Datasets for 'Statistics: Unlocking the Power of Data'
Kernel local polynomial regression
Dependency-Free Access to PNG Image Files
Genome-Wide Association Analysis of a Biomarker Accounting for
Limit of Detection
Local Ordinal Embedding
A simple logging system for R, based on log4j
Relative Risk Regression Using the Log-Binomial Model
Log-concave Density Estimation in Arbitrary Dimensions
Maximum likelihood estimation of a log-concave density based on
censored data
Estimate a Log-Concave Probability Density from Iid Observations
Compute MLE of Log-Concave Density on R with Fixed Mode, and
Perform Inference for the Mode
Estimate a Log-Concave Probability Mass Function from Discrete
i.i.d. Observations
R logging package
Binning Variables to Use in Logistic Regression
Logic Forest
LOGICOIL: multi-state prediction of coiled-coil oligomeric
state
Truth Table Logic Optimizer
Logic Regression
Combined Graphs for Logistic Regression
Firth's Bias-Reduced Logistic Regression
Logistic Regression with Misclassification in Dependent
Variables
Diagnostic Tests for Models with a Binomial Response
Binary Dimensionality Reduction
Functions, Data and Code for Binary and Binomial Data
Fitting l2-regularized logit choice models via generalized
gradient descent
Infer network based on binary arrays using regularized logistic
regression
Functions for the Logitnormal Distribution
Double log normal distribution functions
Log-Multiplicative Models, Including Association Models
Natural Logarithms of the Gamma Function for Large Values
Logrank Test for Aggregated Survival Data
Logspline Density Estimation Routines
Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Lomb-Scargle Periodogram
Package for Plotting Categorical Longitudinal and Time-Series
Data
Model-Based Clustering and Classification for Longitudinal Data
Analysis of Multiple Time Course Data
Longitudinal Data
Statistics for Long-Memory Processes (Jan Beran) -- Data and
Functions
Sample Size Calculations for Longitudinal Data
Time-Dependent Prognostic Accuracy with Multiply Evaluated Bio
Markers or Scores
Recursive Partitioning of Longitudinal Data
Expand Short URLs
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Look-Up Tables using S4
Interactive Statistical Data Visualization
loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
A Collection of Tools to Conduct Levins' Loop Analysis
Uses an Archive to Amend Previous Stages of a Pipe using Current
Output
Logistic Ordinal Regression Differential Item Functioning using
IRT
LOw Rand and sparsE Covariance matrix estimation
Missing Morphometric Data Simulation and Estimation
Runs Lotka's Law which is One of the Special Applications of
Zipf's Law
Low Memory Use Trimmed K-Means
Low Rank Quadratic Programming
Low WAFOM Niederreiter-Xing Sequence
Low WAFOM Sobol Sequence
LP-BRIM Bipartite Modularity
Lassoed principal components for testing significance of
features
Local Principal Curve Methods
Local Polynomial Density Estimation and Inference
Local polynomial estimators of intensity function or its
derivatives
LP Nonparametric High Dimension K-Sample Comparison
'dplyr' Verbs for Lists and Other Verbs for Data Frames
Linear Parametric Models Applied to Hydrological Series
Nonparametric Estimation of Measurement Error Models
Merging linkage maps by linear programming
Modeler for linear programs (LP) and mixed integer linear
programs (MILP)
Lasso and Partial Ridge
Local Polynomial (Ridge) Regression
Linear Predictor Score, for Binary Inference from Multiple
Continuous Variables
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
R Interface to 'lp_solve' Version 5.5.2.0
Learned Pattern Similarity and Representation for Time Series
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series
Modelling
Penalized Likelihood Inference for GLMs
Linear Quantile Mixed Models
Robust Linear Quantile Regression
Dose Response Signal Detection under Model Uncertainty
Sources an R "Module" with Caching & Encapsulation, Returning
Exported Vars
Linear Regression by Gibbs Sampling
Different Types of Estimators to Deal with Multicollinearity
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
Locally stationary two-dimensional wavelet process estimation
scheme
A Multiscale Test of Spatial Stationarity for LS2W processes
Latent Semantic Analysis
Applied Latent Semantic Analysis (LSA) Functions
Datensätze und Übungsmaterial zu 'Large-Scale Assessment mit R'
Functions to Facilitate the Simulation of Large Scale Assessment
Data
Least-Squares Bilinear Clustering for Three-Way Data
Local Statistical Complexity - Automatic Pattern Discovery in
Spatio-Temporal Data
Lots of Superior Depictions
Reading LSD Results (.res) Files
Sensitivity Analysis Tools for LSD
Least square dummy variable regression
Solving Least Squares or Quadratic Programming Problems under
Equality/Inequality Constraints
Linear Multiple Output Sparse Group Lasso
The Length of the Shorth
Latent Structure Learning
Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood
Least-Squares Means
American options pricing with Least Squares Monte Carlo method
Lysate and Secretome Peptide Feature Plotter
Linear Splines with Convenient Parametrisations
LS-PLS Models
Classification using LS-PLS for Logistic Regression
Companion to "Learning Statistics with R"
Land Surface Remote Sensing
the accelerated failure time model to right censored data based
on least-squares principle
Locally Stationary Time Series
Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Latent Trait Models under IRT
Longitudinal Targeted Maximum Likelihood Estimation
LTPD and AOQL Plans for Acceptance Sampling Inspection by
Variables
Perform LTR analysis on microarray data
Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Linear Time Series Analysis
Ridge and Liu Estimates based on LTS (Least Trimmed Squares)
Method
Local Time Space Kriging
Lightweight Sparklines for a LaTeX Document
Make Dealing with Dates a Little Easier
Likelihood inference from case-control data Under Covariate
Assumptions (LUCA)
Printing Floating Point Numbers in a Human-Friendly Format
Currency Formatting and Conversion
Linkage Using Diagnosis Codes
Land Use Change Modelling in R
Track Changes in Data
Lumen Database API Client
Comprehensive Luminescence Dating Data Analysis
TL/OSL Reader Simulator
Lunar Phase & Distance, Seasons and Other Environmental Factors
Lightweight Logging for R Scripts
Out of Memory Vectors
Latent Variable Models for Networks
A Latent Variable Model for Mixed Continuous and Ordinal
Responses
Latent Variable Network Modeling
Letter Value 'Boxplots'
An Automated Approach to Evaluating Dose-Effect Experiments
Following Litchfield and Wilcoxon (1949)
Bindings to Selected 'liblwgeom' Functions for Simple Features
Fast LXB File Reader
Accurate Estimation of Clonal Coincidences and Abundances from
Biological Replicates
Exact Spike Train Inference via L0 Optimization
Movement to Behaviour Inference using Random Forest
Macaulay2 in R
Reading M3 files
Data from the M4 Time Series Forecasting Competition
Models for Financial Economics
Binary and Multiclass Boosting Algorithms
Meta-Analysis with Correlations
Mediation Analysis of Causality under Confounding
Machina Time Series Generation and Backtesting
QA Machina Indicators
Retrieve Data from MacLeish Field Station
Class prediction based on microarray data and clinical
parameters
Meta-Analysis with Mean Differences
Meta-Analysis of Diagnostic Accuracy
Maddison Project Database
Automatic Differentiation of Multivariate Operations
MHC Allele-Based Differencing Between Populations
Model Averaged Double Robust Estimation
May All Data be Reproducible and Transparent (MADRaT) *
Multi-Analysis Distance Sampling
A Flexible Microarray Data Simulation Model
Wrapper Functions for MAESTRA/MAESPA
Multiple Automatic Forecast Selection
Data Class and Tools for Handling Spatial-Temporal Data
create and investigate magic squares
Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Magic Functions to Obtain Results from for Loops
Advanced Graphics and Image-Processing in R
'WeMo Switch' Smart Plug Utilities
A Pipeline for Meta-Genome Wide Association
Magnetic Laplacian Matrix and Magnetic Eigenmap Visualization
Implements the O'Connell-Dobson-Schouten Estimators of Agreement
for Multiple Observers
A Forward-Pipe Operator for R
A Graphical User Interface for Microarray Data Analysis and
Annotation
Sending Email Notifications from R
A Utility to Send Emails from R
Model and Analyse Interval Data
Create Dummy Variables from Categorical Data
Create 'Makefiles' Using R
Visualizing Sequential Classifications
Creates an empty package framework for the LCFD format
Machine Learning Assisted Network Inference
Quantitative Analysis of Mass Spectrometry Data
Import/Export Routines for 'MALDIquant'
MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
A wrapper around the Java machine learning tool MALLET
Designing Multi-Arm Multi-Stage Studies
Calculation of Minimum Averaged Mean Squared Error (MAMSE)
Weights
Manage a CRAN-Style Local Repository
Matrix Analysis and Normalization by Concordant Information
Enhancement
Generates Views on the Mandelbrot Set
Multiple Allocation Model for Actor-Event Networks
Mango Solutions Training Datasets
Risk Prediction on Trees
Interactive Q-Q and Manhattan Plots Using 'plotly.js'
Access and Process Data and Documents of the Manifesto Project
An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Interactive Plots for RStudio
Add Even More Interactivity to Interactive Charts
Manly Mixture Modeling and Model-Based Clustering
Analysis of Multivariate Data and Repeated Measures Designs
Multiple Testing Procedures of Cox (2011) and Wong and Cox
(2007)
Mapping Markers to the Nearest Genomic Feature
Multiple Aggregation Prediction Algorithm
Extra Map Databases
Interactive Editing of Spatial Data in R
A Tool for PH/MAP Parameter Estimation
Construct Consensus Genetic Maps and Estimate Recombination
Rates
Mapping Smoothed Effect Estimates from Individual-Level Data
Smoothed age profile estimation
Utilities for Producing Maps
Data Visualisation on Maps
Map Projections
Visualize Species Occurrence Data
Producing Administrative Boundary Map with Additional Features
Embedded
Draw Geographical Maps
'sf'-Compatible Interface to 'Google Maps' APIs
Geographic Display of Survey Data Statistics
Tools for Reading and Handling Spatial Objects
MAP Estimation of Topic Models
Mapping, pruning, and graphing tree models
Interactive Viewing of Spatial Data in R
Multivariate AutoRegressive analysis
Multivariate Autoregressive Modeling for Analysis of Community
Time-Series Data
Multiplicative AR(1) with Seasonal Processes
Markov Chains
Migration and Range Change Estimation in R
Tools for Aquatic Sciences
Estimation of Meiotic Recombination Rates Using Marey Maps
Approximate marginal inference for regression-scale models
Marginal Effects for Model Objects
Multivariate ARIMA and ARIMA-X Analysis
Benchmark Data Sets and Functions for Marine Species
Distribution Modelling
'Markdown' Rendering for R
Mark-Recapture Analysis for Survival and Abundance Estimation
Market simulator for R
Automatic Marking of R Assignments
Markov Chain Models for Phylogenetic Trees
Easy Handling Discrete Time Markov Chains
Statistical Significance of the Markowitz Portfolio
Multivariate Analysis Based on Relative Likelihoods
Import, Plot and Analyze Bathymetric and Topographic Data
An algorithm for least-squares curve fitting
Multivariate Autoregressive State-Space Modeling
Simulation, Estimation and Selection of MARX Models
Mandallaz' Model-Assisted Small Area Estimators
Build Data Structures for Common Statistical Analysis
Support Functions and Datasets for Venables and Ripley's MASS
Simple Matrix Construction
Body Mass Estimation Equations for Vertebrates
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Multidimensional Adaptive Testing
Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Wrapper for the 'Matchbook' API
Multivariate and Propensity Score Matching with Balance
Optimization
Computation of the Balance - Sample Size Frontier in Matching
Methods for Causal Inference
Analysis of Stable Matchings
Matching Algorithms in R and C++
Nonparametric Preprocessing for Parametric Causal Inference
Calculates SE for Matched Samples from 'MatchIt'
Combining Matching and Linear Regression for Causal Inference
Optimal Multilevel Matching using a Network Algorithm
A Code Converter from the Matlab/Octave Language to R
Matrix Variate Distributions
Tools to Assess Mating Potential in Space and Time
Directed and undirected graphs
Support for the 'Mathpix' API (Image to 'LaTeX')
Measuring Association and Testing Independence Efficiently
MATLAB emulation package
An Interface for MATLAB using System Calls
Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Matrix Clustering with Gaussian and Manly Mixture Models
matrix powers
Metagenomics Analysis Tools for R
Sparse and Dense Matrix Classes and Methods
Data.frame-Like Operations on Sparse and Dense Matrix Objects
Collection of functions for matrix calculations
Matrix Correlation Coefficients
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix
Operations
Normalized Laplacian Matrix and Laplacian Map
Penalized Matrix-Normal Linear Discriminant Analysis
Modelling with Sparse And Dense Matrices
Matrix-Based Partial Least Squares Estimation
Simulations of Matrix Variate Distributions
Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Modern Calibration Functions for the Modern Analog Technique
(MAT)
Decision Models with Multi Attribute Utility Theory
Methods for Dimension Reduction
Meta Analysis via Shiny
Three methods to identify differentially expressed gene sets,
ordinary least square test, Multivariate Analysis Of Variance
test with n contrasts and Random forest
Exact max-type Cochran-Armitage trend test(CATT)
Low-memory Multinomial Logistic Regression with Support for Text
Classification
Maximum Likelihood Estimation and Related Tools
Model Species Distributions by Estimating the Probability of
Occurrence Using Presence-Only Data
Maximum Matching for General Weighted Graph
Fitting 'Maxent' Species Distribution Models with 'glmnet'
Maximum Projection Designs
Orthogonal Data Projections with Maximal Skewness
Maximally Selected Rank Statistics
Maximizing the TPR for a Specified FPR
Spatial Data Download and Utility Functions
Utility Functions for Building Web Databrowsers
Generate Recursive Mazes
Elithorn Maze Generator
Multilevel B-Spline Approximation
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Multivariate Bias Correction of Climate Model Outputs
Model-Based Clustering for RNA-seq Data
Clusterwise Multiblock Analyses
The MBESS R Package
Moment-Based Estimation for Hierarchical Models
Measure Based Graphic Selection
Spatial Designs for Ecological and Environmental Surveys
(M)ultiple-site (B)iodiversity (I)ndices Calculator
Magnitude-Based Inferences
Median-Based Linear Models
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Model Based Multifactor Dimensionality Reduction
Model-Based Boosting
Median Bias Reduction in Binomial-Response GLMs
Multivariate Bayesian Sparse Group Selection with Spike and Slab
Access Data from the Massachusetts Bay Transit Authority (MBTA)
Web API
Bayesian Variable Selection Methods for Multivariate Data
Tools for Two-Dimensional Monte-Carlo Simulations
Translates information from netcdf files with MC2 output into
inter-PVT transitions
Multiple Correspondence Analysis Variants
Matrix Computation Based Identification Of Prime Implicants
Moment Corrected Correlation
Multi-Category Classification Accuracy
Process an MCMC Sample of Clusterings
The Matthews Correlation Coefficient
Functions to Support the Multicriteria Decision Aiding Process
Multi-Criteria Decision Making Methods for Crisp Data
Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Mixtures of Contaminated Gaussian Factor Analyzers
Warnes and Raftery's MCGibbsit MCMC diagnostic
Multivariate Covariance Generalized Linear Models
Global optimization using Monte Carlo and Quasi Monte Carlo
simulation
Multiple matrices heatmap visualization
Monte Carlo hypothesis tests with Sequential Stopping
Multiplicative Competitive Interaction (MCI) Model
IRT models for multiple choice items (mcIRT)
Markov Cluster Algorithm
Estimating Conditional Auto-Regressive (CAR) Models using Monte
Carlo Likelihood Methods
Monte Carlo Local Likelihood Estimation
Mixed Conditional Logit Models
Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Measures for Comparing Clusters
Markov Chain Monte Carlo
Bayesian Analysis of Multivariate Counts Data in DNA
Metabarcoding and Ecology
Bayesian Analysis of qRT-PCR Data
Posterior Distribution of Extreme Value Models in R
MCMC Generalised Linear Mixed Models
Markov Chain Monte Carlo (MCMC) Package
Create Plots from MCMC Output
Precision of Discrete Parameters in Transdimensional MCMC
Monte Carlo Standard Errors for MCMC
Tools to Visualize, Manipulate, and Summarize MCMC Output
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
Multiple Criteria Optimization Algorithms and Related Functions
Data from the M-Competitions
Objects and Methods for Multi-Companion Matrices
Conjoint Analysis through Averaging of Multiple Analyses
Estimating Preferential Attachment from a Single Network
Snapshot by Markov Chain Monte Carlo
Multiple Comparisons Using Normal Approximation
A Simplified Interface for Running Commands on Parallel
Processes
A Monte Carlo permutation method for multiple test correlation
Design and Analysis of Dose-Finding Studies
Testing Generalized Linear Hypotheses for Generalized Linear
Model Parameters by Profile Deviance
Method Comparison Regression
Model Confidence Set Procedure
Functions for Monte Carlo Methods with R
Nonparametric spatial data analysis
Multicollinearity Diagnostic Measures
Markov Chains Transition Matrices
Selecting Bandwidth for Kernel Density Estimator with Minimum
Distance Method
Produces Markdown Log File with a Built-in Function Call
Mixture and Flexible Discriminant Analysis
Multivariate Data Analysis for Chemometrics
Measuring the Difference Between Two Empirical Distributions
Read and Write 'MTrackJ Data Files'
Multivariate Double Hierarchical Generalized Linear Models
Multi-Dimensional MA Normalization for Plate Effect
Multinomial Diversity Model
Model Based Treatment of Missing Data
Multivariate Distance Matrix Regression
Graph-Constrained Regression with Enhanced Regularization
Parameters Selection
Visualising Molecular Dynamics Analyses
Markov Decision Processes Toolbox
Detect gene-gene interactions using multifactor dimensionality
reduction
Improved Score Tests for Generalized Linear Models
Functions for Analysis of Data with General Recognition Theory
A GUI for interactive MDS in R
High Density Genetic Linkage Mapping using Multidimensional
Scaling
Searching for Optimal MDS Procedure for Metric and
Interval-Valued Symbolic Data
Complement to 'Modern Data Science with R'
Maximum Diversity Weighting
Sentiment Analysis Scorer
Clustering via the Mean Shift Algorithm
A Computationally Efficient Mean Shift Implementation
Micro-Electro Array (MEA) Analysis
Tools for Units of Measurement
Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Maximum Entropy Bootstrap for Time Series
Fits the Mixture of Experts Latent Position Cluster Model to
Network Data
Multi Calculator to Compute Scores of Adherence to Mediterranean
Diet
Bayesian Methods for Identifying the Most Harmful Medication
Errors
Mediterranean Forest Simulation
Flexible Mediation Analysis Using Natural Effect Models
Calculate MeDiA_K Distance
Clinical Trial Simulations
Causal Mediation Analysis
Medical Risk and Comorbidity Tools for ICD-9-CM Data
Tools for Obtaining and Cleaning Medicare Public Use Files
Simple Mediation and Moderation Analysis
Median Ordering Statistical R package
MEET: Motif Elements Estimation Toolkit
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Accessing and Processing a 'Mega2' Genetic Database
Multiscale Clustering of Geometrical Network
Interactive model exploration using GGobi
Simulation of Meiosis in Plant Breeding Research
Variable Width Bar Charts: Bar Mekko
Matching Event Data by Location, Time and Type
View and Classify MELODIC Output for ICA+FIX
The Moving Epidemic Method
The Moving Epidemic Method Web Application
Create Meme
Internet Memes for Data Analysts
Spatial pattern detection in genetic distance data using Moran's
Eigenvector Maps
Management of Survey Data and Presentation of Analysis Results
In-Memory Caching for Repeated Computations
Memoisation of Functions
Data sets from Mixed-effects Models in S
Memory Estimation Utilities
Mendelian Randomization Package
Collection of Configurable GTK+ Menus
Multivariate Empirical Density Function
Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models
A GUI for Merging Datasets in R
Accuracy and Precision of Measurements
Tools for Analyzing Mixed Effect Regression Models
Simplification of Surface Triangular Meshes with Associated
Distributed Data
Miscellaneous Esoteric Statistical Scripts
General Package for Meta-Analysis
Meta-Analysis for Diagnostic Test Studies
An Interactive Visualisation of Meta-Analysis as a Physical
Weighing Machine
Meta-analysis of genome-wide SNP association results
Bayesian Model Averaging for Random and Fixed Effects
Meta-Analysis
Probabilistic latent variable models for metabolomic data
Annotation of Metabolites from Liquid Chromatography-Mass
Spectrometry Data
Analysis of Metabolomics Data
Normalize Metabolomic Data using QC Signal
Meta-CART: A Flexible Approach to Identify Moderators in
Meta-Analysis
Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Analysis of the 'Elements of Metacommunity Structure'
EDGE Taxonomy Assignments Visualization
Meta-analysis of correlation coefficients
Evaluate Periodicity in Large Scale Data
MetaDE: Microarray meta-analysis for differentially expressed
gene detection
Metapopulation simulations for conserving salmon through
portfolio optimization
Meta-Analysis Package for R
Exploring Heterogeneity in Meta-Analysis using Random Forests
Fused Lasso Approach in Regression Coefficient Clustering
Comprehensive Research Synthesis Tools for Systematic Reviews
and Meta-Analysis
Inference in Meta Analysis and Meta Regression
Metaheuristic Optimization Framework for Preprocessing
Combinations
An Implementation of Flower Pollination Algorithm in R
Metaheuristic for Optimization
Meta-Analysis of Gene Expression Data
Landscape and Range Expansion Simulation
Likelihood Inference in Meta-Analysis and Meta-Regression Models
Metagenomics Longitudinal Differential Abundance Method
Meta-analysis for MicroArrays
Network Analysis of Metabolic Pathways and Gene Based Assemblies
in Metagenomics
Diagnostic and Prognostic Meta-Analysis
Bayesian Mixture Analysis for Metagenomic Community Profiling
Meta-Analysis of Studies with Non Statistically-Significant
Unreported Effects
Meta-Analysis of Significance Values
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic
data
Data-Driven Diagnostic Plots
Creates CrossHairs Plots for Meta-Analyses
Robust Meta-Analysis and Meta-Regression
MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis
Meta-analysis of RNA-seq data
Meta-Analysis using Structural Equation Modeling
Advanced Statistical Methods to Model and Adjust for Bias in
Meta-Analysis
Meta Analysis for SNP-Set (Sequence) Kernel Association Test
Subtracting Summary Statistics of One or more Cohorts from
Meta-GWAS Results
Fit and test metaregression models
Meta-analysis for Classification Data and Correction to
Imperfect Reference
Variance-Covariance Matrix for Multivariate Meta-Analysis
Rainforest Plots and Visual Funnel Plot Inference for
Meta-Analysis
Spatio-Temporal Analysis and Mapping of Meteorological
Observations
Numerical Weather Predictions
Tools for plotting meteograms
Landscape Meteorology Tools
Fitting and Plotting Tools for the Maximum Entropy Theory of
Ecology (METE)
Analysis of Visual Meteor Data
Meth27QC: sample quality analysis, and sample control analysis
Functions for Analysis of Agreement in Method Comparison Studies
Bias and Precision Plots to Compare Two Measurements with
Possibly Heteroscedastic Measurement Errors
Visualize the methylation patterns
Full Bayesian Partition Model for Identifying Differentially
Methylated Loci
Detection of Differentially Methylated Regions using
MethylCap-Seq Data
Statistical Methods for Normalizing Metabolomics Data
Separate Metabolites into Likely Measurement Artifacts and True
Metabolites
Evaluation Metrics for Machine Learning
Create Interactive Charts with the JavaScript 'MetricsGraphics'
Library
Test Metric and Null Model Statistical Performance
Support for Metrological Applications
Analysis of Multivariate Event Times
Find, Map, and Gather Environmental Data and Metadata
GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
Statistical metabolomics tools
Multivariate Extreme Value Distributions
A Fixed Memeory Moving Expanding Window Average
Mixed Effect Excess Hazard Models
Identifying Master Gene Regulators from Gene Expression and
DNA-Binding Data
Multi-table ExPosition
Mitigated Fraction
Multiple Factor Analysis (MFA)
Meta-Feature Extractor
Multivariate Functional Halfspace Depth
Miscellaneous time series filters
Model-Free Knockoff Filter for Controlled Variable Selection
Multivariable Fractional Polynomials
Multivariate Functional Principal Component Analysis for Data
Observed on Different Dimensional Domains
The Multiple Filter Test for Change Point Detection
Multivariate-from-Univariate (MfU) MCMC Sampler
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR)
Processes
Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Structural Pursuit Over Multiple Undirected Graphs
Module Graphical Lasso
Multivariate Response Generalized Linear Models
Model Averaging for Multivariate GLM with Null Models
Master Gene List
Estimating Time-Varying k-Order Mixed Graphical Models
mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II)
Graphing map attributes and non-map variables in R
API Client for the MG-RAST Server of the US DOE KBase
Multi-Group Sparse Discriminant Analysis
Gene set analysis based on GSZ-scoring function and asymptotic
p-value
General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling
Analysis of MHC Data in Non-Model Species
Minimum Hellinger Distance Test for Normality
Minimum-Hypergeometric Test
Inference for Hidden Markov and Semi-Markov Models
Multiple Hypothesis Testing for Variable Selection in
High-Dimensional Linear Models
Multiple Hypothesis Test Based on Distribution of p Values
Multiple Hypotheses Testing for Discrete Data
Multiple Hypotheses Testing for Multiple Families/Groups
Structure
Bayesian Model Selection in Logistic Regression for the
Detection of Adverse Drug Reactions
Multiple Hurdle Tobit Models
Missing Data Imputation and Model Checking
Maxent Distribution Model Selection
Multivariate Imputation by Chained Equations
Some Additional Multiple Imputation Functions, Especially for
'mice'
Microeconomic Analysis and Modelling
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES)
function
Price and Quantity Indices
Symmetric Normalized Quadratic Profit Function
Multiple Imputation by Chained Equations with Multilevel Data
Multivariate Independent Comparison of Observations
Promotion Time Cure Model with Mis-Measured Covariates
An Implementation of Bat Algorithm in R
Accurate Timing Functions
Methods for Taxonomic Classification of Prokaryotes
The ConTax Data Package
Utilities for Official Spanish Microdata
'Microsoft Academic' API Client
Micro-Macro Multilevel Modeling
Linked Micromap Plots
Linked Micromap Plots for General U. S. and Other Geographic
Areas
Microbial Pan-Genome Analysis
Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Modelling Microbial Populations
Basic Biological Sequence Analysis
MicroStrategyR Package
Performing Continuous-Time Microsimulation
Turn HTML 'Shiny'
Mixed Data Sampling Regression
Multiple Imputation by Distance Aided Donor Selection
Nearly Exact Sample Size Calculation for Exact Powerful
Nonrandomized Tests for Differences Between Binomial
Proportions
Multiple Comparisons Procedures Based on Studentized Midrange
and Range Distributions
Implementing dispersal into species distribution models
Methods for the Indirect Estimation of Bilateral Migration
Migration indices
Graphical User Interface to the 'mi' Package
Learning Causal or Non-Causal Graphical Models Using Information
Theory
Multiple Imputation for Interval Censored Data
Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
MIcrosimulation Lung Cancer (MILC) model
Association Tests for Microbial Lineages on a Taxonomic Tree
Multiple-Instance Logistic Regression with LASSO Penalty
Map Filenames to MIME Types
Mixture summary method for multiple imputation
Data sets included in Utts and Heckard's Mind on Statistics
Convert Files Between Markdown or Rmarkdown Files and Mindmaps
Maximal Information-Based Nonparametric Exploration for Variable
Analysis
Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix)
Create a Mini Version of CRAN Containing Only Selected Packages
tktcl quick and simple function GUI
Minimally Changed CCD and BBD
Create Tile Grid Maps
Minimax distribution family
Minimax and Minimax Projection Designs
Parse Argument Options
Shiny UI Widgets for Small Screens
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Gene region-level testing procedure for SNP data, using the min
P test resampling approach
Derivative-free optimization algorithms by quadratic
approximation
An R Package for Linear Mixed Model Analyses
Learn Direct Interaction Networks
MINimal VALidation for Stoichiometric Reactions
Entropy Optimization Distributions
Multidimensional Iterative Proportional Fitting and Alternative
Models
Mutant Identification through Probabilistic High throughput
Enabled NOrmalization
MicroRNA Microarray Data Analysis
Adaptive Normalization for miRNA Data
Microbiome Regression-Based Kernel Association Test
Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples
'MicroRNA' Set Enrichment Analysis
Multidimensional Item Response Theory
Computerized Adaptive Testing with Multidimensional Item
Response Theory
combined miRNA- and mRNA-testing
Miscellaneous 3D Plots
Miscellaneous Functions
Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Computation of Generalized Linear Models with Misclassified
Covariates Using Side Information
Miscellaneous Functions for the Correlation Coefficient
Miscellaneous Tools Set
Miscellaneous Tools and Utilities
Clears the Workspace (Mise en Place)
Microbiome Based Sum of Powered Score (MiSPU) Tests
Statistical Analysis of Misreporting on Sensitive Survey
Questions
Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Nonparametric Missing Value Imputation using Random Forest
A GUI for Missing Data Exploration
Handling Missing Values with Multivariate Data Analysis
Testing Homoscedasticity, Multivariate Normality, and Missing
Completely at Random
Fast Imputation of Missing Values
Mixed effects Score Test for continuous outcomes
Data Sets, Functions and Examples from the Book: "Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Methods in Structural Reliability Analysis
Mixture of Student t Distributions using Importance Sampling and
Expectation Maximization
Tools for Multiple Imputation in Multilevel Modeling
Tools for multiple imputation of missing data
The Mittag-Leffler Distribution
Estimation/Multiple Imputation for Mixed Categorical and
Continuous Data
Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Clustering using Mixture Models
Mixed effects cumulative link and logistic regression models
Finite Mixture Distribution Models
Missing Data Imputation for Continuous and Categorical Data
using Nonparametric Bayesian Joint Models
Tools for Discrete Multivariate Mixed Membership Models
Mixed Poisson Models
Statistical Tools for the Analysis of Psychophysical Data
Estimation Methods for Stochastic Differential Mixed Effects
Models
Mixed Tempered Stable Distribution
A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable
Missing Data
Design and Analysis of Mixture Experiments
Evaluation of the FIM in NLMEMs using MCMC
Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Omics Data Integration Using Kernel Methods
Mixture Link Regression
Mixed Model ANOVA and Statistics for Education
Implements the MixMAP Algorithm
Omics Data Integration Project
Mixed-Effects Ordinal Regression Analysis
Tools to Work with Mixture Components
Mixtures of Proportional Hazard Models
Finite Mixture Modeling for Raw and Binned Data
Mixture Rasch Models with JMLE
Functions to fit mixtures of regressions
A Random-Forest-Based Approach for Imputing Clustered Incomplete
Data
Forensic Genetics DNA Mixture Separation
Bayesian Mixing Models in R
Simulating Data to Study Performance of Clustering Algorithms
Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
DE Analysis of RNA-Seq Data by Mixtures of NB
Tools for Analyzing Finite Mixture Models
Curve Fitting and Mixture Toxicity Assessment
Mixture Models for Clustering and Classification
Inference for Finite Mixture Models
Mixture Regression Models for Left-Truncated and
Interval-Censored Data
Unconstrained Numerical Optimization Algorithms
Multi-Species sIZE Spectrum Modelling in R
2D and 3D movement-based kernel density estimates (MKDEs)
Kinetic Evaluation of Chemical Degradation Data
Maximum kernel likelihood estimation
Miscellaneous Functions from M. Kohl
Efficient multi-level k-circulant supersaturated designs
Maximum Likelihood Inference on Multi-State Trees
Abstract Classes for Building 'scikit-learn' Like API
Hyper Parameter Tuning for Machine Learning, Using Bayesian
Optimization
Machine Learning Benchmark Problems
Tools to Gather Data from Major League Baseball Advanced Media
(MLBAM)
Latent Class Item Response Theory (LC-IRT) Models under
Within-Item Multidimensionality
Maximum Likelihood Conjoint Measurement
Machine Learning-based Differential Network Analysis of
Transcriptome Data
Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
R Ultimate Multilabel Dataset Repository
Maximum Likelihood Difference Scaling
Expected/Observed Fisher Information and Bias-Corrected Maximum
Likelihood Estimate(s)
Machine learning algorithms with unified interface and confusion
matrices
Computation of the MLE for bivariate (interval) censored data
Maximum Likelihood Estimates of Gaussian Processes
Maximum likelihood unit root test
Multi-Locus Geno-Typing
Independent Component Analysis using Maximum Likelihood
Multilevel Index of Dissimilarity
R API for MLJAR
Multilevel Mediation Analysis
Multi-Level Monte Carlo
Machine Learning Evaluation Metrics
Multilevel Model for Multivariate Responses with Missing Values
ML estimation under multivariate linear mixed models with
missing values
Examples from Multilevel Modelling Software Review
multinomial logit model
Bayesian Model Averaging for Multinomial Logit Models
Multi-Locus Haplotype Phasing
Multi-Label Prediction Using Gibbs Sampling (and Classifier
Chains)
Machine Learning in R
A Toolbox for Model-Based Optimization of Expensive Black-Box
Functions
A package for Multilinear Regression Model Population Analysis
Use the MLS Junk Generator Algorithm to Generate a Stream of
Pseudo-Random Numbers
Most Likely Transformations
Most Likely Transformations: Documentation and Regression Tests
Machine Learning Tools
Multi-Level Vector Autoregression
Simulation of Longitudinal Data
The multiplicative multinomial distribution
Single-Sample Classifier of Medulloblastoma Subtypes for
Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
Gene Expression Datasets for the 'MM2S' Package
Multiple Mediation Analysis
Mathematical Morphology in Any Number of Dimensions
Map Pages of Memory
Memory-Map Character Files
Multivariate Measurement Error Correction
Modified Maximum Contrast Method
Multivariate Multinomial Distribution Approximation and
Imputation for Incomplete Data
Mixture Model Distance Sampling (mmds)
Multinomial Mixed Effects Models
Estimation of Multinormal Mixture Distribution
Multivariate Meta-Analysis
an R package for analyzing multivariate longitudinal data with
multivariate marginal models
Multivariate marginal models with shared regression parameters
Multi-Marker Molecular Signature for Treatment-specific Subgroup
Identification
Modern Measures of Population Differentiation
Implementation of Marker-Assisted Mini-Pooling with Algorithm
Monte-Carlo Methods for Prediction Functions
Various Similarity and Distance Metrics for Marked Point
Processes
Markov Modulated Poisson Process for Unsupervised Event
Detection in Time Series of Counts
Fixed effects Selection in Linear Mixed Models
Model-Based Clustering and Classification with Mixtures of
Modified t Factor Analyzers
Multiple Maps t-SNE
Convert Dates to MMWR Day, Week, and Year
Easy Downloading Capabilities for the Members' Name Information
Service
Multinomial Logit Model
Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Multivariate Normal Distributions with Power Integrand
The Multivariate Normal and t Distributions
R Package for Fitting the Multinomial Probit Model
MNREAD Parameters Estimation and Curve Plotting
Mixed Neighbourhood Selection
Model Based Random Forest Analysis
Mobilize plots and functions
Spatial Simulation and Scale-Dependent Analysis of Biodiversity
Changes
Multi-objective optimization for collecting cluster alternatives
Mocking Library for R
Mocking in R
Extraction of Bands from MODIS Surface Reflectance Product MOD09
NRT
Hierarchical Modal Clustering
Fit a Modified Connor-Mosimann Distribution to Elicited
Quantiles in Multinomial Problems
Mode Estimation
Multiscale Analysis for Density Functions
Classes and Methods for Training and Using Binary Prediction
Models
Model-free estimation of a psychometric function
Validation of risk prediction models
Modeling and Map Production using Random Forest and Stochastic
Gradient Boosting
Rapid Calculation of Model Metrics
A Model Object Framework for Regression Analysis
Modelling Functions that Work with the Pipe
Tools and Classes for Statistical Models
Model Word Clouds
Find the Modes and Assess the Modality of Complex and Mixture
Distributions, Especially with Big Datasets
Model-Based Dose-Escalation Trials
Model Evaluation and Analysis
Modified Mann Kendall Trend Tests
Acquisition and Processing of MODIS Products
R tools for processing Level 2 Cloud Mask products from MODIS
Provides a Function to Download MODIS Snow Cover
A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Calculating Marginal Effects and Levels with Errors
Community Structure Detection via Modularity Maximization
Multiple-Output Directional Quantile Regression
Modelling temperature effects using time series data
Basic Module Functions
Self Contained Units of Source Code
MOlecular DYnamics GLobal ANalysis
Component-Wise MOEA/D Implementation
Parsimonious Model-Based Clustering with Covariates
Marshall-Olkin Extended Zipf
Multiobjective Genetic Algorithm for Variable Selection in
Regression
Mojo Variants: Rare Variants analysis
Conducts Mokken Scale Analysis
Multi-Objective Kriging Optimization
Dental Surface Complexity Measurement Tools
Modeling Language Evolution
Multiple Objective Latin Hypercube Design
Moment and Inverse Moment Bayes Factors
Moment-Matching Methods for Weighted Sums of Chi-Squared Random
Variables
Moments, cumulants, skewness, kurtosis and related tests
Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models
Morphometrics using R
Mining Metaomics Data (MetaOMineR)
Moments of Folded and Doubly Truncated Multivariate
Distributions
Keep track of dates in terms of months
A Simple Graphical Representation of the Relative Occurrence and
Co-Occurrence of Events
Connect MonetDB to R
In-Process Version of 'MonetDB'
Fast and Simple 'MongoDB' Client for R
Acoustic Template Detection in R
Accesses the Monkeylearn API for Text Classifiers and Extractors
Multi-Layer Perceptron Neural Network with Optional Monotonicity
Constraints
Geometric Morphometric Analysis of Monogenean Anchors
Taxonomic Monographs Tools
Monotonic Increasing
Estimation for Multivariate Normal and Student-t Data with
Monotone Missingness
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Functions to Fit Monotone Polynomials
Bayesian Monotonic Regression Using a Marked Point Process
Construction
Nonparametric Monotone Regression
Automatic Parallelized Monte Carlo Simulations
Functions and Datasets for the Book by Keon-Woong Moon
Basic astronomical calculations with R
Species Distribution MOdeling with Pseudo-Absences
MOPSOCD: Multi-objective Particle Swarm Optimization with
Crowding Distance
Basic Quality Data Assurance for Epidemiological Research
Check Time Homogeneity and Markov Chain Order
Color schemes compatible with red-green color perception
difficulties
Calculations and Visualisations Related to Geometric
Morphometrics
MOdelling Tools for Reproduction and Survival Data in
Ecotoxicology
Simple raw data generator based on user-specified summary
statistics
Analysis of Archaeological Mortality Data
Parametric Mortality Models, Life Tables and HMD
Smoothing and Forecasting Poisson Counts with P-Splines
Estimation and Projection of Age-Specific Mortality Rates
Project MOSAIC Statistics and Mathematics Teaching Utilities
Function-Based Numerical and Symbolic Differentiation and
Antidifferentiation
Common Utilities for Other MOSAIC-Family Packages
Project MOSAIC Data Sets
An Interface to Statistical Modeling Independent of Model
Architecture
Multiphase Optimization Strategy
Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Quantitative Analysis of Motion
Models of Trait Macroevolution on Trees
Models for Analysing Moult in Birds
Mountain Plots, Folded Empirical Cumulative Distribution Plots
Mouse-Tracking Measures from Trajectory Data
Process and Analyze Mouse-Tracking Data
Visualizing and Analyzing Animal Track Data
Animal Movement Modelling using Hidden Markov Models
Movement Data Visualization
Estimate Wind Speeds from Bird Trajectories
Mixtures of von Mises-Fisher Distributions
Weekly Notified Dengue Cases in Sri Lanka
Multidimensional Projection Techniques
CoWords Method
Regularized Linear Models
Multinomial Probit Bayesian Additive Regression Trees
Multivariate Process Capability Indices (MPCI)
Multivariate Process Capability Vector
Data sets and scripts for Modeling Psychophysical Data in R
Multiple Primary Endpoints
The package can implement the network-based metabolite pathway
identification of pathways
Modified Profile Likelihood Estimation for Weibull Shape and
Regression Parameters
Graphical Model Stability and Variable Selection Procedures
Automating Mplus Model Estimation and Interpretation
Multivariate Projection Methods
Multivariate Partial Mantel Correlogram
Mixed-Pair Mutual Information Estimators
Symbolic Computation and More with Multivariate Polynomials
Mposterior: R package for Robust and Scalable Bayes via a Median
of Subset Posterior Measures
Statistics for analysing multiple simultaneous point processes
on the real line
Multi-Parameter Regression (MPR)
Modeling Phylogenetic Signals using Eigenvector Maps
Multinomial Processing Tree Models
Analyze Multinomial Processing Tree Models
RAMAS Metapop Tools
Data Sets from Montgomery, Peck and Vining's Book
Metabolomic Quantitative Trait Locus Mapping
Mark-Recapture Analysis
Inferences for ratios of coefficients in the general linear
model
Scale Space Multiresolution Analysis of Random Signals
Multivariate Regression with Covariance Estimation
Numerical Tools for Filling Out an NCAA Basketball Tournament
Bracket
Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Mark-Recapture Distance Sampling
Fits regression models when the outcome is partially missing
Marine Regions Data from 'Marineregions.org'
Fitting and Predicting Large-Scale Nonlinear Regression Problems
using Multi-Resolution Functional ANOVA (MRFA) Approach
Depth Measures in Multivariate, Regression and Functional
Settings
Simulate from ODE-Based Population PK/PD and Systems
Pharmacology Models
Multi-Resolution Estimation of the Hazard Rate
Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted
Rand Index (1 and 2.1 and 2.2)
MRI Tissue Classification
An R Package for Conditional Maximum Likelihood Estimation in
Mixed Rasch Models
Multi-Locus Random-SNP-Effect Mixed Linear Model for Genome-Wide
Association Studies and Linkage Analyses
Multivariate Regression Models for Reserving
Parallelized Minimum Redundancy, Maximum Relevance (mRMR)
Ensemble Feature Selection
Multiple Correlation
Minimal Clinically Important Difference and Response Shift
Effect for Health-Related Quality of Life
Multi-Resolution Scanning for Cross-Sample Differences
Multinomial Response Models with Structured Penalties
A multiplicative-regression model for relative survival
A Sample Size Calculator for Micro-Randomized Trials
Multiresolution time warping for functional data
Package for Calculation of ARMSS, Local MSSS and Global MSSS
Multi-Step Adaptive Estimation Methods for Sparse Regressions
Moving Subset Analysis FACE
Statistical analysis for Methylation-sensitive Amplification
Polymorphism data
Multiple Sequence Alignment for R Shiny
Mass Spectrometry Tools
Multiscale Bernstein Polynomials for Densities
Markov-Switching, Bayesian, Vector Autoregression Models
Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Multivariate Synthetic Control Method Using Time Series
Combine Data from Positive and Negative Ionization Mode Finding
Common Entities
R Client for the Microsoft Cognitive Services Text Analytics
REST API
R Client for the Microsoft Cognitive Services Web Language Model
REST API
Multi-Class Sparse Discriminant Analysis
Bayesian Inference for Multivariate Stochastic Differential
Equations
Parametric Estimation in Mixed-Effects Stochastic Differential
Equations
Metabolite set enrichment analysis for factor loading in
principal component analysis
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data
MSeasy Tcl/Tk Graphical User Interface
Data and Functions for the Book Modern Statistical Graphics
Markov-Switching GARCH Models
High Dimensional Multiclass Classification Using Sparse Group
Lasso
Multivariate Sparse Group Lasso for the Multivariate Multiple
Linear Regression with an Arbitrary Group Structure
A library to serialize or unserialize data in MessagePack format
Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net
Tools for Developing Diagnostic Messages
Model-Based Sliced Inverse Regression
Assess Tumor Microsatellite Instability with a Decision Tree
Classifier from Exome Somatic Mutations
Improved Techniques to Estimate Trend, Velocity and Acceleration
from Sea Level Records
Multi-State Markov and Hidden Markov Models in Continuous Time
Multiblock Sparse Multivariable Analysis
Functions and Datasets for "Methods of Statistical Model
Estimation"
Building Augmented Data to Run Multi-State Models with 'msm'
Package
Data Sets and Functions Used in Multivariate Statistics: Old
School by John Marden
Multivariate Statistical Quality Control
Morse-Smale Approximation, Regression and Visualization
MSSQL Querying using R
Nonparametric Estimation for Multistate Models
Multivariate Survival Trees
Data Preparation, Estimation and Prediction in Multi-State
Models
Analyze MS/MS Protein Melting Data
Procedures to Generate Patterns under Multistage Testing
Multivariate Symmetric Uncertainty and Other Measurements
Fitting Markov Switching Models
Multiscalar Territorial Analysis
Read Data from Delimited 'MTConnect' Data Files and Perform some
Analysis
Mass Transportation Distance Rank Histogram
Maximum Tangent Likelihood and Other Robust Estimation for
High-Dimensional Regression
Sample Size and Post-Hoc Power of Association Studies Involving
Mitochondrial DNA Haplogroups
Mexico ToolKit library (MTK)
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS)
and Estimating Multivariate Volatility Models
Multivariate time series data imputation
Methods in Mahalanobis-Taguchi (MT) System
R Client for the MTurk Requester API
A Graphical User Interface for MTurkR
Munich Franz-Josef-Strauss Airport Pattern Analysis
Data on Freedom of Information Act Requests
Interchange Tools for Multi-Parameter Spatiotemporal Data
Multiple UniDimensional unFOLDing
Multi-Fidelity Cokriging models
Hazard Function Estimation in Survival Analysis
Exploring Data with Tree Data Structures
Generates Muller Plot from Population/Abundance/Frequency
Dynamics Data
Optimal Allocation in Stratified Sampling
Simultaneous Inference in General Parametric Models
Visualizations of Paired Comparisons
Multiregression Dynamic Models
Multiple Equivalence Tests and Simultaneous Confidence Intervals
Optimal Exact Tests for Multiple Binary Endpoints
GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Multi-Trait Genome-Wide Association Analysis
Apply Functions to Multiple Multidimensional Arguments
Finite Difference Method for Multi-Asset Option Valuation
Period Estimation for Multiple Bands
Multivariate Birth-Death Processes
Multibiplot Analysis in R
Multinomial Cochran-Armitage Trend Test
A Generic Convex-Hull-Based Model Selection Method
Flexible Modeling of Multivariate Count Data via the
Multivariate Conway-Maxwell-Poisson Distribution
Multiple Copy Number Variation Detection
Multivariate Constructs
Permutations of Multisets in Cool-Lex Order
Multivariate Analysis and Visualization for Biological Data
Read Fixed Width Format Files Containing Lines of Different Type
Multidimensional Gauss-Hermite Quadrature
Plot and Manipulate Multigraphs
Multigroup Data Analysis
Transitive Index Numbers for Cross-Sections and Panel Data
Multidimensional Latent Class Item Response Theory Models
Multilevel Functions
Multilevel Propensity Score Analysis
Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Meta-analysis of Multivariate Genome Wide Association Studies
Mode Testing and Exploring
Regression analysis of overdispersed correlated count data
Analysis and Mining of Multilayer Social Networks
Multilevel Networks Analysis
Simultaneous confidence intervals for multinomial proportions
according to the method by Sison and Glaz
Robust Estimation of Overdispersed Multinomial Regression Models
Generation of Multivariate Ordinal Variates
Infrastructure to Assemble Multi-Panel Figures (from Grobs)
A Package to Test for Pleiotropic Effects
Variable Importance Analysis with Population Intervention Models
Weighted Cox-Regression for Nested Case-Control Data
Algebraic Tools for the Analysis of Multiple Social Networks
Multiplier Data Envelopment Analysis and Cross Efficiency
Data Manipulation with Parallelism and Shared Memory Matrices
multivariate polynomials
Calculate Multivariate Richness via UTC and sUTC
Multivariate Pseudo-Random Number Generation
Calculating and Visualizing ROC Curves Across Multi-Class
Classifications
Bias, Precision, and Power for Multi-Level Random Regressions
Multivariate Sensitivity Analysis
Causal Mediation Analysis in Multisite Trials
Measures, Tests and Removes Multivariate Skewness
Clustering a Data Set using Multi-SOM Algorithm
Multispatial Convergent Cross Mapping
Fitting Multistate Models
MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing
Spectral Analysis Tools using the Multitaper Method
Measuring Multivariate Dependence Using Distance Multivariance
Models Multivariate Cases Using Random Forests
Variable Selection in the Multivariate Linear Model
A Multivariate Emulator
Estimation of Multivariate Long-Memory Models Parameters
Component Models for Multi-Way Data
Multi-Way Standard Error Clustering
Multivariate Nonparametric Methods
Common Multiple Testing Procedures and Gatekeeping Procedures
Metabolomics Univariate and Multivariate Analysis
Multi-Model Inference
Metric Unfolding
Utilities for Using Munsell Colours
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
Mailmerge using R, LaTeX, and the Web
Murphy Diagrams for Forecast Comparisons
Monetary Unit Sampling and Estimation Methods, Widely Used in
Auditing
Multiscale Climate Model Assessment
Conversion of Nuclear Magnetic Resonance spectrum in audio file
Prentice Rank Sum Test and McNemar Test
Pairwise Likelihood Ratios
Unified Multiple Testing Procedures
A Graphical User Interface for the MuToss Project
Decipher Mutational Signatures from Somatic Mutational Catalogs
MultiClass Visualizable Classification using Combination of
Projections
An Introduction to Applied Multivariate Analysis with R
Statistical Methods for Analysing Multivariate Abundance Data
Analise multivariada (brazilian portuguese)
Mutivariate Bernoulli log-linear model
Modelling Multivariate Binary Data with Blocks of Specific
One-Factor Distribution
Workspace organization, code and documentation editing, package
prep and editing, etc
Multi-View Clustering
Multi-View Clustering
Multivariate Variance Components Tests for Multilevel Data
Wavelet analysis of multiple time series
Multivariate Data Analysis Laboratory
Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Compute and Visualize Bivariate Associations
Multivariate Linear Model with Analytic p-Values
Multivariate, Locally Stationary Wavelet Process Estimation
Multivariate Meshes and Histograms in Arbitrary Dimensions
Multivariate and Univariate Meta-Analysis and Meta-Regression
Multi-State Adaptive Dynamic Principal Component Analysis for
Multivariate Process Monitoring
Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Multivariate Normality Tests
Nelson-Aalen Estimator of the Cumulative Hazard in Multistate
Models
Fast Multivariate Normal and Student's t Methods
Moving Grid Adjustment in Plant Breeding Field Trials
ML estimation for multivariate normal data with missing values
Normality test for multivariate variables
Generate New Multivariate Normal Samples from Permutations
Goodness of Fit Tests for Multivariate Normality
Multivariate Ordinal Regression Models
Multivariate Outlier Detection Based on Robust Methods
Multivariate Peaks-over-Threshold Modelling for Spatial Extreme
Events
Multivariate Probit Models
Orthant Probability of the Multivariate Normal Distribution
Methods for Multivariate Quadrature
Mean-Variance Regularization
Mean and Variance of Truncated Normal Distribution
Shapiro-Francia Multivariate Normality Test
Generalized Shapiro-Wilk test for multivariate normality
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Bayesian Inference for the Multivariate Skew-t Model
Estimation and Testing for the Multivariate t-Distribution
Tree Boosting for Multivariate Outcomes
Multivariate meta-analysis
Multivariate Normal and t Distributions
Multivariate Time Series Plot
Causal Inference in Spatiotemporal Event Data
Multichannel Wavelet Deconvolution with Additive Long Memory
Noise
Penalized Moving-Window Lasso Method for Genome-Wide Association
Studies
Two Stage Moving-Window Ridge Method for Prediction and
Estimation
Efficient mixed-level k-circulant supersaturated designs
Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Stepwise Variable Selection Procedures for Regression Analysis
Integrative immunoinformatics for Mycobacterial diseases in R
platform
Automatic Correlation and Regression Test in a Data Frame
MyEpisodes RSS/API functions
Interface to Myrrix. Myrrix is a Complete, Real-Time, Scalable
Clustering and Recommender System, Evolved from Apache Mahout
R/Myrrix Interface Jars
Evolutionary Transcriptomics Analyses
Regression Models for Monozygotic Twin Data
Port of the 'Scilab' 'n1qn1' Module for Unconstrained BFGS
Optimization
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Nondetects and Data Analysis for Environmental Data
(Non)Additive Genetic Relatedness Matrices
The NAEP Primer
High Performance Implementation of the Naive Bayes Algorithm
Nested Association Mapping
Named Capture Regular Expressions
Using Needleman-Wunsch to Match Sample Names
Provide namespace managment functions not (yet) present in base
R
Data Structures, Summaries, and Visualisations for Missing Data
Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Normalize NanoString miRNA and mRNA Data
Nanosecond-Resolution Time for R
Performs the Processing and Normalisation of Nanostring miRNA
and mRNA Data
A Flexible and Robust Sys.sleep() Replacement
Nonlinear Cointegrating Autoregressive Distributed Lag Model
Subset- And Name-Aware Array Utility Functions
Interface to Various NASA API's
Collection of datasets from the ASA 2006 data expo
NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering
NeuroAnatomy Toolbox ('nat') Extension for Handling Template
Brains
File System Utility Functions for 'NeuroAnatomy Toolbox'
'NatureServe' Interface
Natural Ordering
Regression with NA Values in Unordered Factors
Maximum Likelihood method in estimating effective population
size from genetic data
Negative Binomial Model-Based Clustering
Bayes Classifier for Verbal Autopsy Data
Determining the Best Number of Clusters in a Data Set
Vignette Engine Wrapping IPython Notebooks
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing
Research
Functions for Optimal Non-Bipartite Matching
Negative Binomial Models for RNA-Sequencing Data
Necessary Condition Analysis
Nonlinear Calibration
NCA Calculation and Population PK Model Diagnosis
Noncompartmental Analysis for Pharmacokinetic Report
retrieve and build NBCI taxonomic data
Easier 'NetCDF' File Handling
Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Helper functions for use with the ncdf4 package
Extract Metadata from 'NetCDF' Files as Data Frames
Noncentral Dunnett's Test Distribution
Spatial Nonparametric Covariance Functions
Computes the noncentral gamma function
Straightforward 'NetCDF' Metadata
Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Nearest Centroid (NC) Sampling
Regularization Paths for SCAD and MCP Penalized Regression
Models
Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Naive Discriminative Learning
Network Dynamic Temporal Visualizations
Network Enrichment Analysis
Near-Far Matching
Near-Isotonic Regression
Efficient Network Enrichment Analysis Test
Non-clustered heatmap alternatives
Heatmaps for Multiple Network Data
Attaches and Installs Packages
needy
Calculating Effective Sizes Based on Known Demographic
Parameters of a Population
Negative Binomial and Beta Binomial Bayesian Regression Models
Estimating the Number of Essential Genes in a Genome
Classification, Regression, Clustering with K Nearest Neighbors
R port of the Scilab neldermead module
Access to the Neotoma Paleoecological Database Through R
Utilities for Nephrology
Network Assisted Algorithm for Epigenetic Studies Using Mean and
Variance Combined Signals
National Eutrophication Survey Data
Modeling and Generating Synthetic Versions of Nested Categorical
Data in the Presence of Impossible Combinations
Survival Analysis for Cohorts with Missing Covariate Information
Mann-Whitney-Wilcoxon Test for Nested Ranks
Security Standards Data Sets
Inference of Species Associations from Co-Occurrence Data
Clustering for networks
Statistical Modeling with Network Cohesion
Interactive Networks with R
Dynamic Network Alignment
Network Generation and Comparison
Network Data for McFarland's SNA R labs
Analysis of Diffusion and Contagion Processes on Networks
Network Generator for Combinatorial Graph Problems
Network-Based Gene Set Analysis
Network-Based Genome Wide Association Studies
Estimating network indices, including trophic structure of
foodwebs in R
Network Meta-Analysis using Frequentist Methods
Origin Estimation for Propagation Processes on Complex Networks
Network Pre-Processing and Normalization
Analyzing Partial Rankings in Networks
Permutation Testing Network Module Preservation Across Datasets
Network Estimation for Time Series
A Social Networks Simulation Tool in R
Network Strengths and Weaknesses Analysis
A Network Comparison Framework
Graphic Presentation of Complex Genomic and Network Data
Analysis
Classes for Relational Data
Bayesian Package for Network Changepoint Analysis
Statistical Comparison of Two Networks Based on Three Invariance
Measures
D3 JavaScript Network Graphs from R
Distance Measures for Networks
Dynamic Extensions for Network Objects
Dynamic (Longitudinal) Network Datasets
Network Maze Generator
Inferring Latent Diffusion Networks
Tools for using Network Reporting Estimators
Risk Measures for (Financial) Networks
Simulate Bipartite Graphs with Fixed Marginals Through
Sequential Importance Sampling
Tools for network tomography
Network Filtering Methods and Measures
Tools for Identifying Important Nodes in Networks
Neural Networks
Training of Neural Networks
Visualization and Analysis Tools for Neural Networks
'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Neuroblastoma copy number profiles
Human Connectome Project Interface
Data Structures and Handling for Neuroimaging Data
Toolbox for Psychologists, Neuropsychologists and
Neuroscientists
Functions to Generate fMRI Data Including Activated Data, Noise
Data and Resting State Data
'Neurovault' Database API Access
Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
Parallel Analysis and Non Graphical Solutions to the Cattell
Scree Test
Numerical Formal Concept Analysis for Systematic Clustering
Network Fingerprint Framework in R
Fast n-Gram 'Tokenization'
A Simple General Purpose N-Gram Tokenizer
Fitting the Centered Autologistic and Sparse Spatial Generalized
Linear Mixed Models for Areal Data
Next-Generation Sequencing (NGS) Data Analysis Toolkit
Data from the US National Health and Nutrition Examination Study
NHANES Data Retrieval
Non-hierarchical evolutionary multi-objective tree learner to
perform cost-sensitive classification
Scores for Every Season Since the Founding of the NHL in 1917
Compiling the NHL Real Time Scoring System Database for easy use
in R
Non-Homogeneous Markov Switching Autoregressive Models
Modelling and Validation of Non Homogeneous Poisson Processes
Plot Null Hypothesis Significance Tests
Get or Set UNIX Niceness
(Niche) (R)egion and Niche (Over)lap Metrics for
Multidimensional Ecological Niches
Night and Day Boundary Plot Funtion
Nima Hejazi's R Toolbox
MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Principal Components Analysis using NIPALS with Gram-Schmidt
Orthogonalization
Japanese Utility Functions and Data
Japanese Map Data and Functions
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal
Testing
Nonlinear least squares examples from NIST
Fundamental Physical Constants and Unit Conversions from NIST
Noninferiority Tests with Variable Margins
Solve Nonlinear Optimization with Nonlinear Constraints
Nested Loop Cross Validation
Solve Systems of Nonlinear Equations
Linear and Nonlinear Mixed Effects Models
Non-linear mixed-effects modelling in nlme using differential
equations
Datasets and utility functions enhancing functionality of nlme
package
Nonlinear Mixed Effects Models in Population Pharmacokinetics
and Pharmacodynamics
Simulating Neutral Landscape Models
Functions for Nonlinear Least Squares Solutions
Nonlinear Network Reconstruction and Clustering Based on DCOL
(Distance Based on Conditional Ordered List)
R interface to NLopt
Natural Language Processing Infrastructure
Natural Language Processing Utilities
Higher Order Inference for Nonlinear Heteroscedastic Models
searching for the root of equation
Non-Linear Relative Risk Estimation and Plotting
Non-linear regression with brute force
Fitting Structural Equation Mixture Models
Convenient Functions for Non-Linear Regression
Non-Linear Shrinkage Estimation of Population Eigenvalues and
Covariance Matrices
Nonlinear regression in predictive microbiology
Fitting nonlinear models with scale mixture of skew-normal
distributions
Functions for Nonlinear Least Squares Solutions
Runge-Kutta Solver for Function nls()
Non-Linear Model Fitting of Time Distribution of Biological
Phenomena
Tools for Nonlinear Regression Analysis
Utilities and Kinship Information for Research with the NLSY
A nondecimated lifting transform for signal denoising
(Non)Linear Time Series Analysis
Calculate the NLTT Statistic
Wald Test of Nonlinear Restrictions and Nonlinear CI
Network Meta-Analysis using Integrated Nested Laplace
Approximations
Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
NMF-EM Algorithm
Non-Negative Matrix Factorization (NMF) using CUDA
Non-negative Matrix Factorization
Normalized Mutual Information of Community Structure in Network
Numerical Methods and Optimization in Finance
Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
'NEON' 'API' Client
Feed-Forward Neural Networks and Multinomial Log-Linear Models
Prediction Intervals of Multi-Layer Neural Networks
Time Series Forecasting with Neural Networks
Non-Negative Lasso and Elastic Net Penalized Generalized Linear
Models
Fast and Versatile Non-Negative Matrix Factorization
The Lawson-Hanson algorithm for non-negative least squares
(NNLS)
Nearest Neighbor Based Multiple Imputation for Survival Data
with Missing Covariates
Nonlinear Nonparametric Statistics
Calculate Design Parameters for Biomarker Validation Studies
Explore NOAA Storm Events Database
Node Harvest for Regression and Classification
Compares the Distribution of Sister Clades Through a Phylogeny
Low-Cost Anonymous Functions
Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Estimation of Intrinsic and Extrinsic Noise from Single-Cell
Data
Label Noise Filters for Data Preprocessing in Classification
Hierarchical Nominal Clustering Package
Biplot representations of categorical data
Classify Names by Gender, U.S. Ethnicity, and Leaf Nationality
Extract Equations from a Nomogram
U.S. Census Regional and Demographic Data
Noncompartmental Analysis for Pharmacokinetic Data
Causal Inference in the Presence of Treatment Noncompliance
Under the Binary Instrumental Variable Model
Bayesian Analysis of Randomized Experiments with Non-Compliance
Invariant Causal Prediction for Nonlinear Models
Nonlinear Time Series Analysis
Loading NONMEM Output Files and Simulate with Parameter
Uncertainty
Create and Evaluate NONMEM Models in a Project Context
Tests of Non-Nested Models
A Collection of Nonparametric Hypothesis Tests
Nonparametric Methods for Measuring Efficiency and Productivity
Metagenome Coverage Estimation and Projections for 'Nonpareil'
Model Checking and Variable Selection in Nonparametric
Regression
Stratification and matching by the propensity score
Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Quantized simulation data of isotope pattern centroids
Non-Parametric Concordance Coefficient
Nash Optimal Party Positions
Normal (1-d) Mixture Models (S3 Classes and Methods)
Dataset for Climate Analysis with Data from the Nordic Region
Analysis of multivariate normal datasets with missing values
Analysis of Incomplete Multivariate Data under a Normal Model
Builds General Noise SVRs
Normal-gamma convolution model
Analysis of Metabolomics Data
The Normal Laplace Distribution
Routines for Exponential Power Distribution
Normalisation of Multiple Variables in Large-Scale Datasets
Normalisation of Psychometric Tests
Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Tests for Normality
Normality and White Noise Testing
Geochemical Toolkit for R
Generation of Multivariate Data with Arbitrary Marginals
Tests for Normality
Neyman Smooth Tests of Normality for the Errors of ARMA Models
Compute Node Overlap and Segregation in Ecological Networks
nose Package for R
Advanced Text-Based Plots
Narrowest-Over-Threshold Change-Point Detection
Send Alerts to your Cellphone and Phillips Hue Lights
Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
NOVEL Integration of the Sample and Thresholded (NOVELIST)
Correlation and Covariance Estimators
Nowcast Analysis and Create Real-Time Data Basis
Noweb system for R
Nozzle Reports
Nonparametric Kernel Smoothing Methods for Mixed Data Types
Non-Parametric Measures of Actigraphy Data
Multiple Comparisons and Simultaneous Confidence Intervals
Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Nonparametric Tests for Main Effects, Simple Effects and
Interaction Effect in a Factorial Design with Censored Data
Non-Parametric Bayesian Multiple Imputation for Categorical Data
Nonparametric Boundary Regression
Nonparametric Combination of Hypothesis Tests
Nonparametric Methods for Cognitive Diagnosis
Nonparametric Circular Methods
Non Parametric Test for Detecting Changes in the Copula
Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Normalised prediction distribution errors for nonlinear
mixed-effect models
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry
Data
Sample Size Calculation for the Proportional Hazards Mixture
Cure Model
Nonparametric Interaction Tests for Factorial Designs with
Repeated Measures
Plotting linkage and association results
N-Parameter Logistic Regression
Type-Specific Failure Rate and Hazard Rate on Competing Risks
Data
Nonparametric maximum likelihood estimation for random effect
models
Non Parametric Module
tertiary probabilistic model in predictive microbiology for use
in food manufacture
Nuclear Penalized Multinomial Regression
Nonparametric Comparison of Multivariate Samples
Nonparametric Multivariate Change Point Model
Nonparametric Partially-Balanced Incomplete Block Design
Analysis
Vegetation Phenological Cycle and Anomaly Detection using Remote
Sensing Data
Nonparametric Estimation of Regression Models with
Factor-by-Curve Interactions
Nonparametric Robust Estimation and Inference Methods using
Local Polynomial Regression and Kernel Density Estimation
Neyman-Pearson (NP) Classification Algorithms and NP Receiver
Operating Characteristic (NP-ROC) Curves
Kernel-Based Nonparametric ROC Regression Modelling
Convenience Functions and Tests for Working With the Net
Promoter Score (NPS)
Nonparametric and Stochastic Efficiency and Productivity
Analysis
Nonparametric Smoothing for contaminated data using
Simulation-Extrapolation
Package for Nonparametric Statistical Methods using R
Nonparametric Spatial Statistics
Generalization of Hewitt's Seasonality Test
Nonparametric Survival Analysis
NRI for Risk Prediction Models with Time to Event and Binary
Response Data
Post-normalization of total copy numbers
Non-Negative and Sparse CCA
Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Prepares and Writes Files to Submit to the National Student
Clearinghouse
Numerical Standard Errors Computation in R
Elitist Non-dominated Sorting Genetic Algorithm based on R
Non-Stationary Gaussian Process Regression
Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Nonparametric and Semiparametric Mixture Estimation
Non-Negative and Sparse PCA
Non-supervised Regional Frequency Analysis
Non-Standard ROC Curve Analysis
Network Scale Up Method
Nucleome Imaging Toolbox
NUtrient Cycling and COMpetition Model Undisturbed Open Bog
Ecosystems in a Temperate to Sub-Boreal Climate
Tools for Graphical Inference
Number-Theoretic Functions
Accurate Numerical Derivatives
Statistical Framework to Define Subgroups in Complex Datasets
Tools to Format Numbers for Publication
Number Series Generator
Create a Kaplan-Meier Plot with Numbers at Risk
Numeric Routines for Optically Stimulated Luminescence Dating
Data for "R in a Nutshell"
Audioscrobbler data for "R in a Nutshell"
Baseball Database for "R in a Nutshell"
R functions for NetWorkSpaces and Sleigh
Flights that Departed NYC in 2013
Accessing New York City Taxi Data
New Zealand Election Data
Driving Offences in New Zealand Between 2009 and 2016
OpenAnalytics Colors Package
General Purpose 'Oai-PMH' Services Client
Harvest Metadata Using OAI-PMH Version 2.0
OpenAnalytics Plots Package
Computation of the Orbit-Aware Quad Census
Arrays with arbitrary offsets
Outright Tool for the Analysis of Spatial Inequalities and
Segregation
Blinder-Oaxaca Decomposition
Limit Order Book Analytics
A factory of self-describing properties
objectSignals
Cluster-based factor rotation
Oblique Random Forests from Recursive Linear Model Splits
Estimate the Population Size for the Mb Capture-Recapture Model
Optimal B-Robust Estimator Tools
An R package to assess agreement between observers
Observe and Check your Data
Objective Bayesian Model Discrimination in Follow-Up Designs
Sensitivity analysis for Observational studies
Optimal Classification Roll Call Analysis Software
Optimal Capital Allocations
Estimates PET neuroreceptor occupancies
Analysis of Oceanographic Data
A Plotting Toolbox for 2D Oceanographic Data
Visualisation of Oceanographic Data and Model Output
Oceanographic Datasets for Oce
Order Constrained Solutions in k-Means Clustering
Regression for Rank-Indexed Compositional Data
R Helper for OData Web Services
Open Document Databases (.odb) management
Connect to ODBC Compatible Databases (using the DBI Interface)
Betting Odds Conversion
Odds Ratio Calculation for GAM(M)s & GLM(M)s
C++ ODE Solvers Compiled on-Demand
Sweave processing of Open Document Format (ODF) files
Support for odfWeave on the survey package
Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame
Tools to Convert ODM Files
One-Sided Dynamic Principal Components
Optimal Design and Statistical Power of Multilevel Randomized
Trials
Observatory of Economic Complexity API Wrapper and Utility
Program
Search and Extract Data from the OECD
Orthogonalizing EM
Manipulation of Microsoft Word and PowerPoint Documents
Objective General Index
Estimation of Ordered Generalized Linear Models
OGA+HDIC+Trim and High-Dimensional Linear Regression Models
R Client for Ohmage 2 server
Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Data sets and supplements (OpenIntro)
Crosstab and Statistical Tests for OII MSc Stats Course
Survival analysis supplement to OpenIntro guide
Multivariate Methods Based on the Oja Median and Related
Concepts
OkCupid Profile Data for Introductory Statistics and Data
Science Courses
Retrieve Oklahoma Mesonet climatological data
Open Location Code Handling in R
Oligo Specificity System
OLS growth curve trajectories
Tools for Building OLS Regression Models
filter the molecular descriptors for QSAR
Poly-Omic Prediction of Complex TRaits
'--omics' Data Analysis Toolbox
Perform Two-Way Orthogonal Partial Least Squares
Model and Solve Mixed Integer Linear Programs
A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
Test of Between-Group Differences in the Onset of Senescence
Maximum likelihood tree models for oncogenesis
Estimating oncogenetic trees
Planning, Conducting, and Analysing Single-Arm Phase II Studies
Fast Onehot Encoding for Data.frames
Construction of Genetic Maps in Experimental Crosses: Full-Sib,
RILs, F2 and Backcrosses
One Rule Machine Learning Classification Algorithm with
Enhancements
Efficient Authenticated Interaction with the O*NET API
Deal with one and two (normal) samples
One-Way Tests in Independent Groups Designs
Octonions and Quaternions
Online Principal Component Analysis
Orthogonal Nonlinear Least-Squares Regression
Functions for Reading Ontologies into R
Functions for Visualising Sets of Ontological Terms
Functions for Calculating Ontological Similarities
Out of Bag Learning Curve
Ozgur-Ozlem Miscellaneous
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Data to Illustrate OOMPA Algorithms
Optimistic Optimization in R
Opasnet Modelling Environment Utility Functions
OPtimal Design Of Experiments
Option Pricing and Estimation of Financial Models in R
Client to Access 'Openaddresses' Data
Tools for the Analysis of Air Pollution Data
Interface to the OpenCage API
Interface allowing R to use OpenCL
Producing and Reproducing Results
Interface for OpenDota API
EBGM Scores for Mining Large Contingency Tables
An Image Processing Toolkit
Data Sets and Supplemental Functions from 'OpenIntro' Textbooks
Open Machine Learning and Open Data Platform
Control Number of OpenMP Threads Dynamically
Extended Structural Equation Modelling
Apache OpenNLP Tools Interface
Apache OpenNLP Jars and Basic English Language Models
Tools to Analyse Repertory Grid Data
Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
Access to Open Street Map Raster Images
Tools for Creating and Analysing Air Trajectory Data
Automated Method for Verbal Autopsy
API Client for ENGIE's Open Wind Farm
Read, Write and Edit XLSX Files
Online Prediction by Expert Aggregation
Utilities for Working with R's Operators
Additional Binary Operators
Open Perimetry Interface
Routing Distribution, Broadcasts, Transmissions and Receptions
in an Opportunistic Network
Optimal Power Space Transformation
Optimal Combinations of Diagnostic Tests Based on AUC
'surv' Object Confidence Bands Optimized by Area
Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules
Determine Optimal Clustering Algorithm and Number of Clusters
Optimal Designs for Estimating the Slope Divided by the
Intercept
Tools to Support Optimization Possibly with Bounds and Masks
Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Estimation of value and hedging strategy of call and put
options
Likelihood Based Optimal Partitioning for Indicator Species
Analysis
Set Options if Unset
Command-Line Parsing for an R World
Standard Benchmark Optimization Functions
Computing optimal cutpoints in diagnostic tests
Algorithms for D-, A-, and IV-Optimal Designs
Optimal Timing Identification
Confidence Regions for Optima
R port of the Scilab optimbase module
Flexible Optimization of Complex Loss Functions with State and
Parameter Space Constraints
A Replacement and Extension of the 'optim' Function
R Port of the 'Scilab' Optimsimplex Module
Model Based Diagnostics for Multivariate Cluster Analysis
A Replacement and Extension of the optim() Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm
Randomized Controlled Trials with a Long-Term Binary Endpoint
Optional Types and Pattern Matching
Option Pricing with Efficient Simulation Algorithms
Financial Functions & More
Optimal scaling
Optimum Contribution Selection and Population Genetics
Optimal Mixture Weights in Multiple Importance Sampling
Linear, Quadratic, and Rational Optimization
Functions for Optimal Matching
Command Line Option Parser
Optimal Partitioning of Similarity Relations
Optimization Toolbox for Solving Linear Systems
Optimal Row-Column Designs for Two-Colour cDNA Microarray
Experiments
Optimized Regression Discontinuity Designs
Optimal Trees in Weighted Graphs
Optimal Level of Significance for Regression and Other
Statistical Tests
OPUS Miner Algorithm for Filtered Top-k Association Discovery
Statistical Methods for Modeling Operational Risk
Convenient Tools for Working with Oracle Databases
Computation of Graphlet Orbit Counts in Sparse Graphs
Several confidence intervals for the odds ratio
ORCLUS subspace clustering
Order Restricted Clustering for Microarray Experiments
Estimate Procedure in Case of First Order Autocorrelation
Modelling comparison data with ordinal response
Likelihood-Based Continual Reassessment Method (CRM) Dose
Finding Designs
Separating Location and Dispersion in Ordinal Regression Models
Ordinal Dominance Statistics
Estimate parent distributions with data of several order
statistics
Orderbook visualization/Charting software
Ordered Lasso and Time-lag Sparse Regression
Efficiently Generates Random Order Statistic Variables
Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Ordinated Diet Breadth
Regression Models for Ordinal Data
Ordinal Data Clustering, Co-Clustering and Classification
Ordinal Regression Analysis for Continuous Scales
Ordinal Forests: Prediction and Variable Ranking with Ordinal
Target Variables
Ordinal Regression for High-Dimensional Data
Biplot representations of ordinal variables
Penalized Ordinal Regression
Ordinal Logic Regression
Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Selection and/or Smoothing of Ordinal Predictors
An R Interface to the Onigmo Regular Expression Library
Connector to the Objective Revision Evaluation Service (ORES)
Organic Mass Spectrometry
Analyse Text Files Created by Emacs' Org mode
Helper Functions for Org Files
Order-restricted Information Criterion-based Clustering
Algorithm
Support for orientation data
Generalized Framework for Cross-Validation
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
Fetch Species Origin Data from the Web
Operations Research LOCational Analysis Models
Spanish version of orloca package
ORMDR
Rigorous - DICOM Input / Output
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Rigorous - Positron Emission Tomography
Order Restricted Assessment Of Microarray Titration Experiments
Southern Ocean Frontal Distributions (Orsi)
Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
An Orthogonality Constrained Optimization Approach for
Semi-Parametric Dimension Reduction Problems
Orthogonal B-Spline Basis Functions
Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Collection of functions for orthogonal and orthonormal
polynomials
Orthodromic Spatial Clustering
One-Sided Cross-Validation
Orthogonal Signal Deconvolution for Spectra Deconvolution in
GC-MS and GCxGC-MS Data
Design and analysis of observational studies
Recursive Quoted Language Expansion
Open Source Initiative API Connector
OpenStreetMap and R
Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Object Oriented Simulator of Marine Ecosystems
Bespoke Images of 'OpenStreetMap' Data
Add a Scale Bar to 'OpenStreetMap' Plots
Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Over Sampling for Time Series Classification
Optimal Trees Ensembles for Regression, Classification and Class
Membership Probability Estimation
Inference for Optimal Transport
Robust Model-Based Clustering
Variable Selection for Optimal Treatment Decision
North Temperate Lakes - Microbial Observatory 16S Time Series
Data and Functions
Over Time Variable Plots
Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
A Collection of Disease Outbreak Data
Basic Tools for the Analysis of Disease Outbreaks
Outlier Detection using quantile regression for Censored Data
Outlier Detection for Multi-replicated High-throughput Data
Tests for outliers
Draws Overview of Outliers (O3) Plot
Functions for Solving Multiple-criteria Decision-making Problems
Regression Table for Publication
Analysis of Evolutionary Rates in an OU Framework
Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Estimation of Overlapping in Empirical Distributions
OpenWeatherMap API Wrapper
Oxycline Index from Matrix Echograms
Processing of Oxy-Bisulfite Microarray Data
Plot the Australian Coastline and States
Posterior Predictive Checks of Coalescent Models
Welfare's Synthetic Indicator
Analyzing survival data
Performance Attribution for Equity Portfolios
Summarize Daily Physical Activity from 'activPAL' Accelerometer
Data
Pabon Lasso Graphs and Comparing Situations of a Unit in Two
Different Times
Partition-Assisted Clustering and Multiple Alignments of
Networks
Clustering Online Datasets
PAC-Bayesian Estimation and Prediction in Sparse Additive
Models
Convert values to/from raw vectors
Build Website of Package Documentation
Track R Package Downloads from RStudio's CRAN Mirror
Circle Packing
Toy example of Pack Classic
A few Useful Functions for Statisticians
A Dependency Management System for Projects and their R Package
Dependencies
Toy Example of S4 Package
Package Management Tool
Procrustes Application to Cophylogenetic Analysis
Testing for Partial Copulas and the Simplifying Assumption in
Vine Copulas
Predictive Analysis of Clinical Trials
Padé Approximant Coefficients
Quickly Get Datetime Data Ready for Analysis
Attributable Fraction Function for Censored Survival Data
Book Companion for Processing and Analyzing Financial Data with
R
Generative Mechanism Estimation in Temporal Complex Networks
Put Page Numbers on Graphics
An API Client for Wikimedia Traffic Data
The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways
Pathway Analysis Methods for Genomewide Association Data
Plotting Paintmaps
Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples
Paired Data Analysis
A tool for comparing heatmaps
D3 Scatterplot Matrices
Visualization using Eulerian tours and Hamiltonian
decompositions
Rasch Model Parameters by Pairwise Algorithm
Confidence Intervals for Two Sample Comparisons
Pairing Up Units and Vectors in Panel Data Setting
Pakistan Population Census 2017
Multiple Indicator Cluster Survey (MICS) 2014 Child
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household Listing
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Women
Questionnaire Data for Punjab, Pakistan
Significance Tests for Palaeoenvironmental Reconstructions
Download and Process Data from the Paleobiology Database
Analysis of Charcoal Records from the Global Charcoal Database
Paleoecological Analysis
Geometric Morphometric Tools for Paleobiology
Paleontological and Phylogenetic Analyses of Evolution
Analyze Paleontological Time-Series
Use Pokemon Inspired Colour Palettes
Insolation for Palaeoclimate Studies
Fitting Point Process Models via the Palm Likelihood
Colour Palettes for Data
Color Palettes, Colormaps, and Tools to Evaluate Them
Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Power Analysis for Random Effects in Mixed Models
Implementation of the Panel Data Approach Method for Program
Evaluation
Pam: prediction analysis for microarrays
Multiple Imputation for Multivariate Panel or Clustered Data
Benchmarking and Rescaling R2 using Noise Percentile Analysis
Preferential Attachment Based Common Neighbor Distribution
Derived Functional Associations
An R 'Pandoc' Writer
Pandoc Filters for R
Aggregate Longitudinal Survey Data
Estimation of Linear AR(1) Panel Data Models with
Cross-Sectional Heteroskedasticity and/or Correlation
Random Effects and/or Sample Selection Models for Panel Count
Data
Linear models for panel data
Client for the 'Pangaea' Database
PANIC Tests of Nonstationarity
A Semi-Parametric Test for Specifying Functional Form
View Medical Research Images using the Papaya JavaScript Library
A Toolbox for Writing Pretty Papers and Reports
Distance Recordings from a Paper Plane Folding/Flying Experiment
Parallel Distance Matrix Computation using Multiple Threads
Random Forest Classification with Parallel Computing
Automate parallelization of function calls by means of dynamic
code analysis
Unified Interface to Parallelization Back-Ends
Methods for combining independent subset Markov chain Monte
Carlo (MCMC) posterior samples to estimate a posterior density
given the full data set
A Parallel-Voting Algorithm for many Classifiers
Paralellised Versions of Constraint Based Causal Discovery
Algorithms
A Parallel-Voting Version of the Support-Vector-Machine
Algorithm
Parallel Tree
A Shiny GUI for some Parameter Estimation Examples
Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Parametric Linkage and Other Pedigree Analysis in R
Simplify Parameters
Run a Function Iteratively While Varying Parameters
Horn's Test of Principal Components/Factors
Distributed Model-Based Boosting
Regularized estimation of partial correlation matrices
Parallel implementation of the "segment" function of package
"DNAcopy"
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
Computing, Fitting and Validating the PPS Distribution
Parametric Frailty Models
Parallelized functions for palaeoecological and
palaeogeographical analysis
Tools for Analysing UK Politics
Portfolio Allocation and Risk Management Applications
Parallel Mutual Information estimation for Gene Network
reconstruction
Model-Based Clustering with Regularization Methods for
High-Dimensional Data
Partial Orders in Socio-Economics
Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Parse ThermoFisher MSF Files and Estimate Protein Abundances
Parallel Simulation Studies
Partially Censored Regression Models Based on Heavy-Tailed
Distributions
Partitioning Using Deletion, Substitution, and Addition Moves
Partial Autoregression
Partial Cointegration
Partially Overlapping Samples t-Tests
Partial Odds Ratio
Implements Measures for the Comparison of Two Partitions
Partition Maps
Compute a distance metric between two partitions of a set
Additive Partitions of Integers
Tools for the 'Parallel' Package
Periodic Autoregressive Time Series Models
A Laboratory for Recursive Partytioning
A Toolkit for Recursive Partytioning
Parviol
Polygenic Analysis System (PAS)
Summarize Daily Physical Activity from 'SenseWear' Accelerometer
Data
Prediction and Stability Selection of Tuning Parameters
Travel Smoothly Between Country Name and Code Formats
Create Random Passwords
Noodlyfied Pasting of Strings
Package for Analysis of Space-Time Ecological Series
Phylogenetic Assembly with Soft Taxonomic Inferences
PROBABILITY and STATISTICS WITH R
Probability and Statistics with R, Second Edition
Package to Patch .dvi or .synctex Files
Scatterplots of image patches
Communication Between Editor and Viewer for Literate Programs
An R Client to the PatentsView API
A Tool for Identification of Differentially Expressed Pathways
using Multi-Statistic Comparison
Classification using biological pathways as prior knowledge
Basic functions for drawing path diagrams
Compute Deviation and Correspondence Between Spatial Paths
Pathmox Approach of Segmentation Trees in Partial Least Squares
Path Modeling
Path Manipulation Utilities
Backwards Variable Selection for Paths using M Plus
Visualizing Temporal Microbiome Data
Feature Extraction from Female Brown Anole Lizard Dorsal
Patterns
Class-Focused Pattern Metric Comparisons using Simulation
Quantification of Color Pattern Variation
Versatile Pie Charts, Bar Charts and Box Plots using Patterns,
Colors and Images
Bayesian Experimental Design for Systems Biology
Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Physical Activity with Accelerometers
Implementation of the PAWL algorithm
Penalized Adaptive Weighted Least Squares Regression
Adding Progress Bar to '*apply' Functions
P2BAT
Protracted Birth-Death Model of Diversification
Programming with Big Data -- Base Wrappers for Distributed
Matrices
Programming with Big Data -- Demonstrations and Examples Using
'pbdR' Packages
'pbdR' Distributed Matrix Methods
Programming with Big Data -- Interface to MPI
Programming with Big Data -- Interface to Parallel Unidata
NetCDF4 Format Data Files
Programming with Big Data --- MPI Profiling Tools
Programming with Big Data -- Remote Procedure Call
Programming with Big Data -- Scalable Linear Algebra Packages
Programming with Big Data -- Interface to ZeroMQ
Partially Balanced Incomplete Block Designs
A Set of Datasets Used in My Classes or in the Book 'Modele
Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
Vectorized Bivariate Normal CDF
Parametric Bootstrap and Kenward Roger Based Methods for Mixed
Model Comparison
Tracking the Progress of Mc*pply with Progress Bar
Permutation Based Non-Parametric Analysis of CRISPR Screen Data
Probability of Backtest Overfitting
Plot Brackets
Periodic B Splines
ADMB for R Using Scripts or GUI
Solver for Delay Differential Equations
Mapping Fisheries Data and Spatial Analysis Tools
GUI Tools Made Easy: Interact with Models and Explore Data
Three Dimensional PCA Plots
Segmenting Multiple Time Series by Contemporaneous Linear
Transformation
PCA Plotting in a User Friendly Way
Create 2D Principal Component Plots with Bootstrapping
Fast Principal Component Analysis for Outlier Detection
Tools for Principal Component Analysis-Based Data Structure
Comparisons
L1-Norm PCA Methods
Methods for Graphical Models and Causal Inference
Bayesian Calibrations of P-Values
Multivariate Analysis of Mixed Data
Parallel Analysis for Ordinal and Numeric Data using Polychoric
and Pearson Correlations with S3 Classes
Robust PCA by Projection Pursuit
Pediatric Complex Chronic Conditions
Finding the Number of Significant Principal Components
Dynamic Principal Components for Periodically Correlated
Functional Time Series
Semiparametric regression analysis of panel count data using
monotone splines
Model Fitting to Progressively Censored Mixture Data
Principal Component of Explained Variance
Computation of Ancestry Scores with Mixed Families and Unrelated
Individuals
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Principal Component Gene Set Enrichment
Piecewise Constant Hazards Models for Censored and Truncated
Data
Implementation of POSIXct work-alike for 365 and 360 day
calendars
IRT Models for Polytomous and Continuous Item Responses
Partial Correlation Coefficient with Information Theory
Model Response Styles in Partial Credit Models
Patient-Centered Network Meta-Analysis
Panel Cointegration Tests
Principal Covariates Regression
Principal Coordinates of Phylogenetic Structure
Analyzing Real-Time Quantitative PCR Data
Implementing the Coalescent Approach to PCR Simulation Developed
by Weiss and Von Haeseler (NAR, 1997)
Quantitative Polymerase Chain Reaction (qPCR) Machine Learning
Helper Tool
Simulation of the Forensic DNA Process
Calculate the probability of correct selection (PCS)
Panel-Corrected Standard Error Estimation in R
Parallel Constraint Satisfaction Networks in R
Permutation Distribution Clustering
Panel Data Econometrics with R
Cluster analysis via nonparametric density estimation
Fetch Economic and Financial Time Series Data from Public
Sources
Search Tools for PDF Files
Programmatic Conversion of PDF Tables
Text Extraction, Rendering and Converting of PDF Documents
Partitioned Distance Function
Photogrammetric Distances Measurer
Proximal/distal modeling framework for Pavlovian conditioning
phenomena
Personalized Disease Network
Panel Dynamic OLS Estimation of Cointegrating Vectors
Partial Dependence Plots
Pattern Discovery in PDB Structures of Metalloproteins
PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher
Approximations
Threshold Model and Unit Root Tests in Panel Data
Positive definite sparse covariance estimators
An Analysis Toolbox for Hermitian Positive Definite Matrices
Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
Periodogram Peaks in Correlated Time Series
Compute the Annotation Error of Peak Calls
Peak Picking Methods Inspired by Biological Data
Monitor the Total and Peak RAM Used by an Expression or Function
Peaks
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq
Data
Joint Peak Detection in Several ChIP-Seq Samples
Optimal Segmentation Subject to Up-Down Constraints
Package for Periodic Autoregression Analysis
Maximum Likelihood Inference for the Pearson VII Distribution
with Shape Parameter 3/2
Pearson Distribution System
Independent component analysis using score functions from the
Pearson system
Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Functions to facilitate power and sensitivity analyses for
genetic studies of natural populations
An implementation for association analysis with CNV data
Gene-Level Statistics for Pedigree Data
Pedigree functions
Pedigree-based mixed-effects models
Pedometric Tools and Techniques
Luck-Corrected Peer Performance Analysis in R
Population and Evolutionary Genetics Analysis System
Population Proportion Estimation using Group Testing
Geophysical Inverse Theory and Optimization
A Penalized EM algorithm incorporating missing-data mechanism
Portable Emissions (and Other Mobile) Measurement System
Utilities
L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation
in GLMs and in the Cox Model
Penalized Classification using Fisher's Linear Discriminant
Feature Selection SVM using penalty functions
Penalty Learning
Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines
Estimating Non-Simplified Vine Copulas Using Penalized Splines
Regularization in Cox Frailty Models
Density Estimation with a Penalized Mixture Approach
Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines
Estimating Regularized Multi-state Models Using L1 Penalties
Flexible R-Vines Estimation Using Bivariate Penalized Splines
Penalized Elastic Net S/MM-Estimator of Regression
Simulation of high-dimensional data and parallelized repeated
penalized regression
Parallelised Estimation of Prediction Error
Insilico peptide mutation, digestion and homologous comparison
PepSAVI-MS Data Analysis
Evaluation of Diversity in Nucleotide Libraries
Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Moderated Regression Package
Periodic Time Series Analysis
Using Percolation and Conductance to Find Information Flow
Certainty in a Direct Network
Implementing Double Bootstrap Linear Regression Confidence
Intervals Using the 'perc-cal' Method
Estimate Percentiles from an Ordered Categorical Variable
Person Fit
PerfMeas: Performance Measures for ranking and classification
tasks
Econometric tools for performance and risk analysis
An Infra-Structure for Performance Estimation of Predictive
Models
Toolbox for Polyploid Genetic Data
Periodic Table of the Elements
Exact or Asymptotic permutation tests
Permutational Algorithm to Simulate Survival Data
Permutations and Mallows Distributions
Permutation Tests for General Dependent Truncation
Using GPUs in Statistical Genomics
Permutational Group Sequential Test for Time-to-Event Data
Permutation Based Gene Expression Pathway Analysis
A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Permutation Tests for Regression, (Repeated Measures)
ANOVA/ANCOVA and Comparison of Signals
Permutations of a Finite Set
Functions for Generating Restricted Permutations of Data
Resampling-based prediction error estimation for regression
models
English to Persian dictionary
Automated Persomics Array Image Extraction
Estimation and Validation Methods for Subgroup Identification
and Personalized Medicine
Pictographic Representation of Treatment Effects
Permutation of Species During Turnover Events
Tools for evaluating collinearity
Random Perturbation of Count Matrices
Analysis of single serving and composite pesticide residue
measurements
Simulation and Reconstruction of PET Images
Penalized Exponential Tilt Model
Building, Visualizing, Exporting and Replaying Petri Nets
Statistics and Text Mining for Oil and Gas Papers from OnePetro
Metadata
Reproducible Retrieval of Pew Research Center Datasets
Phylogenetics for the Environmental Sciences
Estimates False Discovery Proportion Under Arbitrary Covariance
Dependence
Poisson-Gamma Additive Models
Penalized Generalized Estimating Equations in High-Dimension
Penalized Generalized Estimating Equations for Bivariate Mixed
Outcomes
Parallel Group ICA Algorithm
Data Analysis in Ecology
Panel Generalized Linear Models
Generalized Least Square in comparative Phylogenetics
Nested Resolvable Designs and their Associated Uniform Designs
Estimating Multiple Gaussian Graphical Models (GGM) in Penalized
Gaussian Mixture Models (GMM)
Parsimonious Gaussian Mixture Models
The p-Generalized Normal Distribution
Build Dependency Graphs using Projection
Discover Probable Duplicates in Plant Genetic Resources
Collections
Precision of Geometric Sampling
Bayesian Single-Arm Phase II Designs
Phase II Clinical Trial Design Using Bayesian Methods
Phase II Clinical Trial Design for Multinomial Endpoints
Phalen Algorithms and Functions
Phylogenetic Reconstruction and Analysis
Gene Set Pareto Heterogeneity Analysis of Time-Course Gene
Expression Data
Pharmacometric Power calculations for mixed study designs
Repeated Measurement Design for Phase I Clinical Trial
Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Inference for Phase-type Distributions
Modelling anthropogenic deforestation
Pretty Heatmaps
Nonparametric Stability Analysis
Auxiliary Functions for Phenological Data Analysis
Phenotypic Integration Index
Auxiliary functions for phenological data processing, modelling
and result handling
Auxiliary functions for phenological data analysis
High-Throughput Generation of Genetic Markers and Maps from
Molecular Phenotypes for Crosses Between Inbred Strains
Tools to Manage a Parametric Function that Describes Phenology
Projecting Satellite-Derived Phenology in Space
Process Digital Images of a Vegetation Cover
Flexible Phenotype Simulation from Different Genetic and Noise
Models
Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Post-Hoc Interaction Analysis
Similarity and Distance Quantification Between Probability
Functions
Proportional Hazards Mixed-Effects Model (PHMM)
Convert Letters to Numbers and Back as on a Telephone Keypad
Phonetic Spelling Algorithms
Tools for Phoneticians and Phonologists
Tools for Phonetic and Acoustic Analyses
Photobiological Calculations
Read Spectral and Logged Data from Foreign Files
Spectral Data of Light Emission by Lamps
Spectral Data for Light-Emitting-Diodes
Plant Photobiology Related Functions and Data
Waveband Definitions for UV, VIS, and IR Radiation
Simple Phrase Extraction
R Interface to Geochemical Modeling Software
Panel Data Analysis with Heterogeneous Time Trends
Proportional Habitat Use Assessment
Web Application Framework for 'PhUSE' Scripts
PharmacoVigilance Signal Detection
Run Phoenix NLME and Perform Post-Processing
Analysis of Outbreaks with Sequence Data
Phylogenetic Clustering (Phyloclustering)
An Extension (for Package 'SigTree') of Some of the Classes in
Package 'phylobase'
Rapid Calculation of Phylogenetic Information Content
Spatial Interpolation of Genetic Data
Base Package for Phylogenetic Structures and Comparative Data
Interactive Phylogenetic Trees Using the 'Phylocanvas'
JavaScript Library
Integrating Phylogenetics and Climatic Niche Modeling
Phylogenetic Comparative Methods for High-Dimensional Traits
Automatic Shift Detection using a Phylogenetic EM
Functions for Phylogenetically Based Statistical Analyses
Dendrograms for Evolutionary Analysis
Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
Phylogenetic Linear Regression
Fast and Exact Algorithms for Computing Phylogenetic
Biodiversity Measures
Estimating Statistical Errors of Phylogenetic Metrics
Perform Phylogenetic Path Analysis
Exploring the Phylogenetic Signal in Continuous Traits
Flexible Simulations of Biological Sequence Evolution
Phylogenies with Annotations
Phylogenetic Tools for Eco-Phylogenetics
Calculating Topological Properties of Phylogenies
Matches Tip and Trait Data
Implements the Phylogenetic Regression of Grafen (1989)
Marks Periods of 'Bedrest' in Actigraph Accelerometer Data
Process Physical Activity Accelerometer Data
Calculate Physiological Characteristics of Adults and Children
A Fast, Flexible Tool for Sorting Phylogenetic Trees
Phylogenetic Tools for Comparative Biology (and Other Things)
Phytoplankton Production Tools
R tools for integrating phylogenies and ecology
Pathwise Calibrated Sparse Shooting Algorithm
Process Improvement using Data
Bayesian Model to Find Changepoints Based on Rates and Count
Data
Piecewise Structural Equation Modeling
Potential Impact Fraction and Population Attributable Fraction
for Cross-Sectional Data
Self Contained Gene Set Analysis for Gene- And
Pathway-Environment Interaction Analysis
Polygenic Inverse Gamma Shifts
Global Univariate Minimization
Coloured Formatting for Columns
Fit Probabilistic Index Models
Fast and Stable Estimation of the Probability of Informed
Trading (PIN)
Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for
17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Check if a Remote Computer is Up
A Wrapper for the Pinnacle API
Market Odds Data from Pinnacle
'pinp' is not 'PNAS'
Convert Chinese Characters into Pinyin
Dual-Agent Dose Escalation for Phase I Trials using the PIPE
Design
Convert Nested Functions to Pipes
Permutation p-Value Estimation for Gene Set Tests
Machine Learning Pipelines for R
Multi-Paradigm Pipeline Implementation
Predicted Interval Plots
Generated Effect Modifier
Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing
'pitchfx'
Parsing Expression Grammars in Rcpp
A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Create Pivot Tables in R
Tools for Working with Image Pixels
Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Bitmap Images (``Pixel Maps'')
Basic Non-Compartmental Pharmacokinetics
Private Configuration for 'R' Packages
Copy Local R Packages to Another Environment
A Consistent and Intuitive Platform to Explore the Dependencies
of Packages on the Comprehensive R Archive Network Like
Repositories
Create Simple Packages Which Do not Upset R Package Checks
Package development utilities
Model diagnostics for population pharmacokinetic models
Public Key Infrastucture for R Based on the X.509 Standard
Least-Squares Estimator under k-Monotony Constraint for Discrete
Functions
Perform Pharmacokinetic Non-Compartmental Analysis
Pharmacokinetic and Pharmacodynamic Data Management Functions
Pharmacokinetic/pharmacodynamic models
Pharmacokinetics in R
A reporting pipeline for checking population pharmacokinetic
model assumption
Probabilistic Knowledge Structures
Prediction-Based Kinase-Substrate Enrichment Analysis
Parallel Line Assays
A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated
Data
Tools for Accessing the Google Maps API
Plackett-Luce Models for Rankings
Tools for project planning
Multilayer Optics
Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD
414 Acceptance Sampling Plan
Generation of Regular Factorial Designs
Modelling and Analysis of Leaf Gas Exchange Data
Partially Linear Additive Quantile Regression
Tumor Mutation Detection in Plasma
Visualization of Plasmid Profile Results
'Plasmode' Simulation
Read, Tidy, and Display Data from Microtiter Plates
Tools and Plots for Multi-Well Plates
Dynamic Updating Methods for Player Ratings Estimation
A GUI for interactive plots using GTK+
Interface to the 'Pleiades' 'Archeological' Database
Pleiotropy Test for Multiple Traits on a Genetic Marker
Probabilistic Latent Feature Analysis
A GUI to View, Design and Export Various Graphs of Data
Particle Learning of Gaussian Processes
IRT Separate Calibration Linking Methods
Multiplicity control using Pooled LIS statistic
Linear Models for Panel Data
Additive partially linear models for differential gene
expression analysis
Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for
Partial Rankings/Orderings
Estimate (Generalized) Linear Mixed Models with Factor
Structures
Partially Linear Mixed Effects Model
Polytomous logit-normit (graded logistic) model estimation
The 'plog' C++ Logging Library
Multivariate Ordered Probit Model via Pairwise Likelihood
Plotting Multi-Dimensional Data
Plotting Multi-Dimensional Data - Using 'rgl'
Various Functions to Facilitate Visualization of Data and
Analysis
Plot Spatial or Spatio-Temporal Data Over Google Maps
Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
'ggplot2' Version of "I'm Feeling Lucky!"
Create Interactive Web Graphics via 'plotly.js'
MCMC Diagnostic Plots
Plot Marginal Effects from Linear Models
Plot a Model's Response and Residuals
Plot Principal Component Histograms Around a Scatter Plot
Useful Networking Tools for Project Management
Development of Visualization Tools for Protein Sequence
Creates an envelope that surrounds a set of points plotted in a
two dimensional space
Various Plotting Functions
Generate Useful ROC Curve Charts for Print and Interactive Use
Making Visual Exploratory Data Analysis with Nested Data Easier
Graphing Nonlinear Relations Among Latent Variables from
Structural Equation Mixture Models
Spider Plots, ROC Curves, Pie Charts and More for Use in Other
Plots
Log Linear by Linear Association models and Rasch family models
by pseudolikelihood estimation
Statistical inference in partial linear regression models
Partial Least Squares and Principal Component Regression
The Partial Least Squares (PLS) Biplot
Partial Least Squares (PLS) Data Analysis Methods
Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
PLS Analyses for Genomics
Tools for Partial Least Squares Path Modeling (PLS-PM)
Formula Based PLS Path Modeling
Sensitivity Indexes from Polynomial Chaos Expansions and PLS
Partial Least Squares Regression for Beta Regression Models
Partial Least Squares Regression for Cox Models and Related
Techniques
Partial Least Squares Regression for Generalized Linear Models
Variable Selection in Partial Least Squares
Simulate Probabilistic Long-Term Effects in Models with Temporal
Dependence
Plug-in Kernel Density Estimation
An API Generator for R
Mutable and dynamic data models
Penalized Linear Unbiased Selection
A Google+ Interface for R
Tools for Splitting, Applying and Combining Data
Penalized Multivariate Analysis
Process Map Visualization
Phylogenetic Monte Carlo
pmcgd
Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm for Finite Mixture
Gaussian Model
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Minimal Working Examples for Particle Metropolis-Hastings
Processes Mining in Medicine
Penalized Multinomial Logistic Regression
Generate PMML for Various Models
Transforms Input Data from a PMML Perspective
Probability Models for Ranking Data
Downloading, Reading and Analysing PNADc Microdata
Read and write PNG images
Probit-Normal Marginalized Transition Random Effects Models
Probabilistic neural networks
Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Principal Orthogonal ComplEment Thresholding (POET) Method
Bayesian Variable Selection for a Poisson-Logistic Model
PogromcyDanych / DataCrunchers is the Masive Online Open Course
that Brings R and Statistics to the People
The Poisson Binomial Distribution
Classification and clustering of sequencing data based on a
Poisson model
Poisson lognormal and bivariate Poisson lognormal distribution
Validation of Local and Remote Data Tables
Point Density for Geospatial Data
Analyzing Pointer Years and Components of Resilience
Input/Output Functionality for "PO" and "POT" Message
Translation Files
Data Generation with Poisson, Binary and Continuous Components
A Faster Implementation of the Poisson-Binomial Distribution
Data Generation with Poisson, Binary and Ordinal Components
Generation of Up to Four Different Types of Variables
Data Generation with Poisson, Binary, Ordinal and Normal
Components
Confidence Intervals with Poisson Double Sampling
Simultaneous Generation of Count and Continuous Data
Simultaneous Generation of Multivariate Data with Poisson and
Normal Marginals
Simulating Homogenous & Non-Homogenous Poisson Processes
Fit high dimensional mixtures of Poisson GLMs
Significance analysis of sequencing data based on a Poisson log
linear model
Poisson-Tweedie exponential family models
Play Texas Hold Em Poker
Polytomous variable Latent Class Analysis
Political Data Interface in R
Datasets and Functions Featured in Pollock and Edwards R
Companion to Essential of Political Analysis
Detecting Politeness Features in Text
Analysis of Aerobiological Data
Client for the HuffPost Pollster API
Toolkit for Corpus Analysis
Interface to the Poloniex Cryptocurrency Trading API
Polynomial Spline Routines
Implementation of the Polya-Aeppli distribution
Simulating from the Polya Posterior
Sensitivity Indexes Calculated from Polynomial Chaos Expansions
Qualitative Palettes with Many Colors
Polygon Clipping
Polychoric and Polyserial Correlations
Cubature over Polygonal Domains
Bayesian Population Genomics in Autopolyploids
Linkage Analysis in Outcrossing Polyploids
A Collection of Functions to Implement a Class for Univariate
Polynomial Manipulations
Polynomials in R
Paternity Exclusion in Autopolyploid Species
The Pharmacokinetics (PK) of Multi-Component Drugs Using a
Metabolomics Approach
Helper Functions for Orthogonal Polynomials
Tools for Polyploid Microsatellite Analysis
Simulate and test marker dosage for dominant markers in
autopolyploids
Bayesian mixture models for marker dosage in autopolyploids
Trend Classification Algorithm
Bootstrapped Basis Regression with Oracle Model Selection
POM - Patch Occupancy Models
Adaptive Association Tests for Multiple Phenotypes using
Proportional Odds Model (POM-aSPU)
Pattern Oriented Modelling Information Criterion
Statistical Inference for Partially Observed Markov Processes
Person-Oriented Method and Perturbation on the Model
Partial Orders and Relations
Object Pooling
Pooled Mean Group Estimation of Dynamic Heterogenous Panels
A Flexible Syntax for Population Dynamic Modelling
Models for Simulating Wolf Populations
Construction and Analysis of Matrix Population Models
Demographic Modelling Using Projection Matrices
Plot Population Demographic History
Population (and Individual) Optimal Experimental Design
Functions for Epidemiological Analysis using Population Data
Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
An Efficient Swiss Army Knife for Population Genomic Analyses
A Simple Framework to Analyse Population and Landscape Genetic
Data
For interval estimation of mean of selected populations
Tools for Simplifying the Population and Querying of SQLite
Databases
Genetic Analysis of Populations with Mixed Reproduction
Read GenAlEx Files Directly from Excel
popRange: A spatially and temporally explicit forward genetic
simulator
Reconstruct Human Populations of the Recent Past
Functions for Constructing and Evaluating Self-Organizing Maps
Estimate Smooth and Linear Trends from Population Count Survey
Data
Models for Simulating Populations
Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Portmanteau Tests for Univariate and Multivariate Time Series
Models
Analysing equity portfolios
Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
High Frequency Price Estimators by PortfolioEffect
High Frequency Portfolio Analytics by PortfolioEffect
Small/Large Sample Portfolio Optimization
Framework for simulating equity portfolio strategies
Portfolio Risk Analysis
Valid Post-Selection Inference for Linear LS Regression
Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
Parses Web Pages using Postlight Mercury
Generalized Pareto Distribution and Peaks Over Threshold
Markov Chain Monte Carlo for Potts Models
Utility Functions of the Potts Models
The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Power and Reversal Power Distributions
Powell's UObyQA algorithm
Computation of Power and Level Tables for Hypothesis Tests
Power and Sample-Size Distribution of 2-Stage Bioequivalence
Studies
Power Analysis in Experimental Design
Power Estimates for ANOVA Designs
Power Analysis Tool for Joint Testing Hazards with Competing
Risks Data
Power and Sample Size Calculation for eQTL Analysis
Power Calculations for GxE and GxG Interactions for GWAS
Analysis of Heavy Tailed Distributions
Power Calculations for Longitudinal Multilevel Models
Power/Sample Size Calculation for Mediation Analysis
Power Normal Distribution
Power analyses for the affected sib pair and the TDT design
Exponentiation Operations
Power and Sample Size Calculation for Survival Analysis of
Epidemiological Studies
Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Power Analysis Tools for Multilevel Randomized Experiments
Person Parameter Estimation
Probability Plot Correlation Coefficient Test
Projection Pursuit for Cluster Identification
Probabilistic and Possibilistic Cluster Analysis
Partial and Semi-Partial (Part) Correlation
Projection Pursuit Classification Forest
Predict Protein-Protein Interactions Based on Functional and
Topological Similarities
Penalized Partial Least Squares
Point Process Models with LASSO Penalties
Functions for PPS sampling
Projection pursuit classification tree
Projection Pursuit Classification Tree Visualization
web tool for estimating under-five deaths caused by poor-quality
antimalarials in sub-Saharan Africa
Functions for Clustering of Presence-Absence, Abundance and
Multilocus Genetic Data
Practical Numerical Math Functions
Tools for Designing and Weighting Survey Samples
Provides a pragma / directive / keyword syntax for R
Prais-Winsten Estimation Procedure for AR(1) Serial Correlation
Praise Users
Kvantitatiivsete meetodite praktikumi asjad / Functions used in
the course "Quantitative methods in behavioural sciences"
(SHPH.00.004), University of Tartu
Collection of Information-Based Feature Selection Filters
Paired Response Curve
Testing Workbench for Precision-Recall Curves
Penalized Regression-Based Clustering Method
Person-Centered Analysis
Prediction Rule Ensembles
Precipitation Intensity, Concentration and Anomaly Analysis
Accurate Floating Point Sums and Products
Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Tools for Detecting Predatory Publishers and Journals
Assessment of Risk Prediction Models
Tidy, Type-Safe 'prediction()' Methods
Prediction Interval Functions for Assessing Replication Study
Results
Prediction Intervals for Three Basic Statistical Models
Calculate Predicted Means for Linear Models
Test Bench for Comparison of Data Prediction Models
Covariate Adaptive Clustering
Classification rule based on Bayesian mixture models with
feature selection bias corrected
Predictive Approaches in Psychology
Time Series Prediction
R Package for Pairwise Preference Elicitation
2-Stage Clinical Trial Design and Analysis
Utilities to Fit Paired Comparison Models for Preferences
Pre-Knitting Processing and Post HTML-Rendering Processing
Dirichlet Process Bayesian Clustering, Profile Regression
Preparing Experimental Data for Statistical Analysis
Basic Functions for Pre-Processing Microarrays
Tools for Preprocessing Combinations
Lightweight Data Quality Simulation for Classification
Tools for Visualization of Interdependent Data Quality Issues
R Markdown Templates to Preregister Scientific Studies
Presence-Absence Model Evaluation
Interface for PreSens Fiber Optic Data
Predicting the Number of Species in a Random Sample
Probability-Scale Residuals and Residual Correlations
Diagnostics to Assess the Effects of Text Preprocessing
Decisions
Pretty Print R Code in the Terminal
Creating Pretty Documents from R Markdown
publication-quality graphics
Scale Bar, North Arrow, and Pretty Margins in R
Pretty Descriptive Stats
Pretty, Human Readable Formatting of Quantities
Tools for Prevalence Assessment Studies
Geostatistical Modelling of Spatially Referenced Prevalence Data
Estimating Regional Trends of a Prevalence from a DHS
Permutation Significance for Random Forests
Patient Rule Induction Method (PRIM)
Use Prime Factorization for Computations
Functions and data for A Primer of Ecology with R
Visually Assessing the Specificity and Informativeness of Primer
Pairs
Generate and Test for Prime Numbers
Eigenvalues and Singular Values and Vectors from Large Matrices
PRIM Survival Regression Classification
Fits a Principal Curve in Arbitrary Dimension
Finding and plotting simple basis vectors for multivariate data
Automatically Print R Objects to Appropriate Formats According
to the 'knitr' Output Format
Systematic Conservation Prioritization in R
Conservation Planning Data Sets
Analyzing Multiple Omics Data with an Offset Approach
Access Data from the Oregon State Prism Climate Project
Protocol Inspection and State Machine Analysis
Plot Flow Charts According to the "PRISMA" Statement
Downloads and Parses World Prison Brief Data
Differentially Private Regularized Logistic Regression
Estimation of Prevalence Ratios using Logistic Models
Point-Process Response Model for Optogenetics
Statistical Tools for Probing Moderation Effects
Probabilistic Fisher Discriminant Analysis
Probabilistic weather forecast using the GOP method
Probit with Spatial Dependence, SAR and SEM Models
Unsupervised Multivariate Outlier Probabilities for Large
Datasets
probsvm: Class probability estimation for Support Vector
Machines
Inference for the Stress-Strength Model R = P(Y<X)
Display and Analyze ROC Curves
Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT
Statistical Process Control Charts
Construct Process Maps Using Event Data
Building Process Monitoring Dashboards
Execute and Control System Processes
Product Density Estimation for ICA using tilted Gaussian density
estimates
Production Function Estimation
Research Project Directory Generator
Product-Limit Estimation for Censored Event History Analysis
Indices of Productivity Using Data Envelopment Analysis (DEA)
Product Plots for R
An Alternative Display Profiling Data as Tree Structure
The package can prioritize candidate disease metabolites based
on global functional relationships between metabolites in the
context of metabolic pathways
Profile Dirichlet Process Mixtures
Grades Setting and Exam Maker
Read, Manipulate, and Write Profiler Data
Profile Likelihood for a Parameter in Commonly Used Statistical
Models
Tools for profiling inference functions for various model
classes
Profile Analysis of Multivariate Data in R
Quickly Profile Data in R
Fit Projected 2D Profiles to Galaxy Images
Simple Memory Profiling for R
Photometry Tools
An alternative display for profiling information
Profile Output Processing Tools for R
Interactive Visualizations for Profiling R Code
Finding the Optimal Cluster Number Using Progeny Clustering
support package for "Programming Graphical User Interfaces in R"
Prognostic ROC curves for evaluating the predictive capacity of
a binary test
Terminal Progress Bars
A simple interface to the PROJ.4 cartographic projections
library
Projection Based Clustering
Project Future Case Incidence
Project Dense Vectors Representation of Texts on a 2D Plan
Automates the Creation of New Statistical Analysis Projects
Project Management Tools
Calculates and Analyzes the Proliferative Index
Client for the 'Alteryx Promote' API
Biological Network Construction, Visualization and Analyses
Analyzing Combination of Proportions and Relative Risk
Propagation of Uncertainty
Various confidence interval methods for proportions
Propensity Clustering and Decomposition
Parse Java Properties Files for R Service Bus Applications
Automatic Forecasting Procedure
Inference on Single Binomial Proportion and Bayesian
Computations
Feature (gene) selection based on the Proportional Overlapping
Scores
Calculating Proportionality Between Vectors of Compositional
Data
Propensity score methods for assigning treatment in randomized
trials
'ProPublica' U.S. Congress Bills API Wrapper
Patient Reported Outcomes Regression Analysis
Functions to Score Commonly-Used Patient-Reported Outcome (PRO)
Measures and Other Psychometric Instruments
Tools to Score Patient-Reported Outcome (PRO) and Other
Psychometric Measures
Miscellaneous functions for processing and sample selection of
vis-NIR diffuse reflectance data
Generates Various Protein Descriptors for Machine Learning
Algorithms
Optimization of a multi-stage proteomic study
Statistical Analysis of High Throughput Proteomics Data
Protein (identification and) quantification based on peptide
evidence
Prototype Object-Based Programming
Interpretable classification with prototypes
Hierarchical Clustering with Prototypes
PRocess TOol LIdar DAta in R
Fast and Simple Object Serialization to Protocol Buffers
The Proton Game
Inference on Prototypes from Clusters of Features
Generating Various Numerical Representation Schemes for Protein
Sequences
Manipulate and Play 'ProTracker' Modules
Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Tools for Natural Language Processing in French
Statistical Toolbox for Sedimentary Provenance Analysis
Distance and Similarity Measures
Minimal Protein Set Explaining Peptide Spectrum Matches
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Test of Periodicity using Response Surface Regression
Tools for Computing on the Language
Datasets and Functions Used in the Book 'Przewodnik po Pakiecie
R'
Bootstrapping for Propensity Score Analysis
Propensity Score Analysis Graphics
Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Analysis of Parent-Specific DNA Copy Numbers
Political Science Computational Laboratory
Standardizing Physiological Composite Risk Endpoints
Adaptive, Sine-Multitaper Power Spectral Density Estimation
Polygonal Symbolic Data Analysis
Download Regularly Maintained Political Science Data Sets
Parameter Space Exploration with Latin Hypercubes
Computes Pseudo-Observations for Modeling
Methods for Evaluating Principal Surrogates of Treatment
Response
Forecasting of Univariate Time Series Using the Pattern
Sequence-Based Forecasting (PSF) Algorithm
Projected Spatial Gaussian Process (psgp) methods
Specificity Index Statistic
Build Panel Data Sets from PSID Raw Data
Several Local False Discovery Rate Estimators
SIMEX Algorithm on Pedigree Structures
Pakistan Social and Living Standards Measurement Survey 2014-15
Non-Linear Mixed-Effects Modelling using Stochastic Differential
Equations
Particle Swarm Optimization
Particle Swarm Optimization
Spearman's rank correlation test
Penalized Smoothing Splines
Analysis of Physiologically Structured Population Models
Piecewise Exponential Model for Time to Progression and Time
from Progression to Death
Probabilistic Suffix Trees and Variable Length Markov Chains
Assessing Pst Statistics
Specification Tests for Parametric Propensity Score Models
Panel Smooth Transition Regression Modelling
Simulations of grouped responses relative to baseline
Propensity Score Weighting Methods for Dichotomous Treatments
Various procedures used in psychometry
Procedures for Psychological, Psychometric, and Personality
Research
Psychometric Meta-Analysis Toolkit
Efficient and Publishing-Oriented Workflow for Psychological
Science
Applied Psychometric Theory
Psychometric Mixture Models
Infrastructure for Psychometric Modeling
Recursive Partitioning Based on Psychometric Models
CUSUM Person Fit Statistics
Functions for analyzing psychophysical data in R
Produce Well-Formatted Tables for Psychological Research
Principal Tensor Analysis on k Modes
Personalized Treatment Evaluator
Periodicity Tests in Short Time Series
Point-In-Polyhedron Test (2D and 3D)
Time Dependent Point Process Modelling
Stemming Algorithms for the Portuguese Language
Parametric Time Warping
Words Used in Portuguese Wikipedia
Quality Report Generation for MaxQuant Results
Bayesian Variable Selection with Hierarchical Priors
Performs simulation study to look for publication bias, using a
technique described by Ioannidis and Trikalinos; Clin Trials.
2007;4(3):245-53
Format Output of Various Routines in a Suitable Way for Reports
and Publication
Text Mining of PubMed Abstracts
'Pubmed' Word Clouds
Printing Results of Statistical Computing in a Publishable Way
High-Dimensional Variable Selection with Presence-Only Data
R Interface to Pullword Service
Parallel Utilities for Lambda Selection along a Regularization
Path
Parallel Ultra-Rapid p-Value Computation for Linear Regression
Interaction Terms
Pumilio in R
Bayesian Estimation of Tumor Purity and Clonality
Purge Training Data from Models
Functional Programming Tools
Tools at the Intersection of 'purrr' and 'dplyr'
Send Push Notifications using Pushover
Population Viability Analysis with Data Cloning
Calculation and Application of p-Variation
P-Values for Classification
Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
An R package to interact with the Project Vote Smart API for
scientific research
Time Series Regression Using the Power Weighted Densities (PWD)
Approach
Design and Monitoring of Survival Trials Accounting for Complex
Situations
P-Value Weighting
Utilities for Working with Air Quality Monitoring Data
Basic Functions for Power Analysis
Power and Sample Size Analysis for One-way and Two-way ANOVA
Models
Power Analysis for AB Testing
Power in a Group Sequential Design
Statistical Power Simulation for Testing the Rasch Model
Penn World Table (Versions 5.6, 6.x, 7.x)
Penn World Table (Version 8.x)
Penn World Table (Version 9.x)
PC-Axis with R
R Interface to the PX-Web/PC-Axis API
Pycnophylactic Interpolation
Functions to draw population pyramid
Use Python from Within R
Heuristics for the Quadratic Assignment Problem (QAP)
Quality Assurance Toolkit
Quantile-Based Boxplot
Qualitative Comparative Analysis
Tests for Type I Error in Qualitative Comparative Analysis (QCA)
Advanced Functionality for Performing and Evaluating Qualitative
Comparative Analysis
Helper Functions for QCA in R
Quantitative Classification by Association Rules
Quality Control Charts
Fast and Easy Quality Control of EWAS Results Files
Quality Control of Genome Wide Association Study results
Robust Estimation of Gaussian Mixture Models
Quality Control Review
A 5-Qubit Quantum Computing Simulator
Sure Independence Screening via Quantile Correlation and
Composite Quantile Correlation
Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Dictionaries and Word Lists for the 'qdap' Package
Regular Expression Removal, Extraction, and Replacement Tools
Tools for the 'qdap' Package
Fitting a Quadrilateral Dissimilarity Model to Same-Different
Judgments
Quantitative Fatty Acid Signature Analysis
Quantitative Fatty Acid Signature Analysis in R
Pricing of Vanilla and Exotic Option Contracts
Smooth Additive Quantile Regression Models
The q-Gaussian Distribution
Estimate Quantitative Genetics Parameters from Generalised
Linear Mixed Models
Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Tools for Quantitative Genetics Data Analyses
Qualitative Harmonic Analysis
Estimate the Coefficients for Non-Convex Penalized Quantile
Regression Model by using QICD Algorithm
Quality Improvement Charts
Quality Improvement Charts
Work with QIIME Output Files in R
R Interface to Qiita API
Processing Data for Quantitative Language Comparison (QLC)
Utility Sparse Matrix Functions for Quantitative Language
Comparison
Visualization for Quantitative Language Comparison (QLC)
Simulation-Based Quasi-Likelihood Estimation
Estimation and inference for Q-learning
Reinforcement Learning using the Q Learning Algorithm
Statistical Transformations for Post-Processing Climate Model
Output
Analysis of Subjective Perspectives Using Q Methodology
Parser combinator in R
Differential RNA Methylation Analysis for Count-Based
Small-Sample Sequencing Data with a Quad-Negative Binomial
Model
Analysis of Health-Related Quality of Life in Oncology
Model Validation using Quantile Spectral Analysis and Parametric
Bootstrap
Modelling and analysis of real-time PCR data
qPCR data analysis and plot package
Quasi-Potential Analysis for Stochastic Differential Equations
Q-Q and Manhattan Plots for GWAS Data
Permutation Based QQ Plot and Inflation Factor Estimation
Quantile-Quantile Plot Extensions for 'ggplot2'
Self Calibrating Quantile-Quantile Plots for Visual Testing
Animated Normal Quantile-Quantile Plots
A 'Shiny' Gadget for Interactive 'QRA' Visualizations
Tools that Create D3 JavaScript Force Directed Graph from R
A Novel Quantile Regression Approach for eQTL Discovery
Quantile Regression Coefficients Modeling
Nonlinear and Penalized Quantile Regression Coefficients
Modeling
QRcode Generator for R
Quantile Regression in Varying-Coefficient Models
Quick Response Code (QR Code) / Matrix Barcode Creator
Simultaneous simulation of Q and R mode factor analyses with
Spatial data
Joint Estimation in Linear Quantile Regression
Quantile Regression for Linear Mixed-Effects Models
Provides R-Language Code to Examine Quantitative Risk Management
Concepts
Data Sets for Quantitative Risk Management Practice
Quantile Regression Mixture Models
Tools for Quantitative Risk Management
(Randomized) Quasi-Random Number Generators
Quantile Regression for Nonlinear Mixed-Effects Models
Quantile Regression Neural Network
SVM Quantile Regression with the Pinball Loss
Quantitative Structure Activity Relationship (QSAR) Data Sets
Interface Between R and Qt
Quantile Treatment Effects
Tools for Analyzing QTL Experiments
Datasets for the R/qtl Book
Densitometric Analysis of Thin-Layer Chromatography Plates
Interactive Graphics for QTL Experiments
Design of QTL experiments
Inference for QTL Hotspots
Tools for Mapping Multiple Complex Traits
Causal Inference of QTL Networks
Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
Utilities for Quantiles
Qt-Based Painting Infrastructure
Miscellaneous Qt-based utilities
QuACN: Quantitative Analysis of Complex Networks
Exact permutation moments of quadratic form statistics
Quadrangle Mesh
Functions to solve Quadratic Programming Problems
Quadratic Programming with Absolute Value Constraints
Sparsity by Worst-Case Quadratic Penalties
Causal Inference with Qualitative and Ordinal Information on
Outcomes
Test for Qualitative Interactions
Statistical Methods for Quality Science
Automatic Generation of Qualitative Color Palettes
Download Qualtrics Survey Data Directly into R
Qualitative Validation Methods
Implements Indices of Qualitative Variation Proposed by Wilcox
(1973)
API Wrapper for Quandl.com
Streamline Descriptive Analysis of Quantitative Data Matrices
Quantitative chemical analysis: calibration and evaluation of
results
Quantitative Analysis of Textual Data
Quantification of Qualitative Survey Data
Estimation of Conditional Quantiles using Optimal Quantization
Quantile Classifier
Quantile-Adjusted Restaurant Grading
Quantitative Financial Modelling Framework
Algorithms for Quantile- And Mean-Optimal Treatment Regimes
Quantitative Psychology Tools
Quantile Regression
Nonparametric Series Quantile Regression
Quantile Regression Forests
Growth Charts via Regression Quantiles
Quantile Regression Forests for 'ranger'
Quantile-Based Spectral Analysis of Time Series
Enhanced Quantitative Trading Modelling
Clustering Mutations using High Throughput Sequencing (HTS) Data
Interaction Prediction Between Groundwater and Quarry Extension
Using Discrete Choice Models and Artificial Neural Networks
Functions to Make Surveys Processing Easier
Computationally Efficient Queue Simulation
Analysis of Queueing Networks and Models
Calculation of Homology of Quandles, Racks, Biquandles and
Biracks
Regularized sparse inverse covariance matrix estimation
Quick Threshold Blocking
Quickly Map and Explore Spatial Data
Quick Generalized Full Matching
A System of Plotting Optimized for Speed and Modularity
Fits Psychometric Functions for Multiple Groups
Build Regression Models Quickly and Display the Results Using
'ggplot2'
Quick Linear Regression
Qualitative Interaction Trees
Summary charts of micro satellite profiles for a set of
biological samples
Quantile Regression Outlier Diagnostics with K Left Out Analysis
A Way of Writing Functions that Quote their Arguments
Quantile Universal Threshold
Variables Selection for Clustering and Classification
Quasi Variances for Factor Effects in Statistical Models
Questionnaires Validation Module
Quick Wraps 2
Generalized Eigenvalues and QZ Decomposition
Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Unified Handling of Graphics Devices
Easy Handling of and Access to Files Organized in Structured
Directories
Methods for Accessing Huge Amounts of Data [deprecated]
Perform JIVE Decomposition for Multi-Source Data
Read and Write MAT Files and Call MATLAB from Within R
S3 Methods Simplified
R Object-Oriented Programming with or without References
Dynamic Generation of Scientific Reports
Various Programming Utilities
Estimation of R0 and Real-Time Reproduction Number from
Epidemics
Compressive Sampling: Sparse Signal Recovery Utilities
'ADMB' to R Interface Functions
Estimate Structured Additive Regression Models with 'BayesX'
Multidimensional Numerical Integration
Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Multiple Peak Alignment for 2D Gas Chromatography Mass
Spectrometry Metabolomics Analysis
2d Rain Use Efficience model
Converting R CRAN outputs into Google Earth
Computes R Squared for Mixed (Multilevel) Models
Wrapper Functions for GUESS
HTML Exportation for R Objects
Using R to Run 'JAGS'
R to LaTeX and HTML
Running 'MLwiN' from Within R
Running OpenBUGS from R
Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient
A GTK GUI for fitting and comparing GLM and GLMM in R
r2stl, R package for visualizing data using a 3D printer
Convert R Graphics to Flash Animations
Goodness-of-Fit Tests for Capture-Recapture Models
Write MS-Word documents from R
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
An R package for Stats 330
A R Convenience Layer for CouchDB 2.0
4dfp MRI Image Read and Write Routines
R Code for Stock Synthesis
Classes with Reference Semantics
Generate Codes to Uniquely and Robustly Identify Individuals for
Animal Behavior Studies
R Package for Aqua Culture
Racing methods for the selection of the best
Fit RAD models to biological data
Phylogenetic Analysis of RADseq Data
Normalization and Study of Rank Abundance Distributions
Fundamental Formulas for Radar
Radar Chart from 'Chart.js'
Business Analytics using R and Shiny
Basics Menu for Radiant: Business Analytics using R and Shiny
Data Menu for Radiant: Business Analytics using R and Shiny
Design Menu for Radiant: Business Analytics using R and Shiny
Model Menu for Radiant: Business Analytics using R and Shiny
Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Tools for plotting skew-T diagrams and wind profiles
Inverse-Regression Estimation of Radioactive Doses
Calculate Population Stratification
Analytical Tools for Radiation Oncology
Radon and Soil Gas Transport in 2D Porous Medium
Project Multidimensional Data in 2D Space
Loading Google Adwords Data into R
Convenience Functions for Routine Data Exploration
Ridge Estimation of Precision Matrices from High-Dimensional
Data
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
Pricing Equity Derivatives with Extensions of Black-Scholes
Data Fusion Filters for Attitude Heading Reference System (AHRS)
with Several Variants of the Kalman Filter and the Mahoney and
Madgwick Filters
Rail Trail Data for Trails in the United States from the
Rails-to-Trails
Rainbow Plots, Bagplots and Boxplots for Functional Data
Obtain and Analyze Rainfall Data from the Climate Prediction
Center
Rainfall Frequency (Design Storm) Estimates from the US National
Weather Service
Easy Spatial Microsimulation (Raking) in R
Retrieves Altmerics Data for Any Published Paper from
'Altmetric.com'
R for Amplicon-Sequencing-Based Microbial-Ecology
Parser Combinator for R
The Random Subgraph Model
JavaScript Charts Tool
Estimation and Inference in Random Attention Models
Robust Adaptive Metropolis Algorithm
An Interface to the AMIDST Toolbox for Data Stream Processing
Additional Matrix Functionality
Regularized Generalized Linear Models with Interaction Effects
Structural Equation Modeling Using the Reticular Action Model
(RAM) Notation
Bayesian Geostatistical Modeling with RAMPS
Reinforced Angle-Based Multicategory Support Vector Machines
Random number generator based on AES cipher
Generate Random 'WKT' or 'GeoJSON'
Efficient Numerical Algorithm for Exact Inference in Meta
Analysis
Package Provides Access to Fake User Data
Random Network Model Selection and Parameter Tuning
True Random Numbers using RANDOM.ORG
A Parallel Analysis with Polychoric Correlation Matrices
Generate Attractive Random Colors
Simulation and Analysis of Random Fields
Utilities for the Simulation and Analysis of Random Fields
Breiman and Cutler's Random Forests for Classification and
Regression
Distributed 'randomForest' for Big Data using 'ddR' API
Explaining and Visualizing Random Forests in Terms of Variable
Importance
Random Forests for Survival, Regression, and Classification
(RF-SRC)
Random General Linear Model Prediction
Flexible Randomization-Based Inference
Create a Random List for Crossover Studies
Randomization for Clinical Trials
Easy to Use Tools for Common Forms of Random Assignment and
Sampling
Random Effects Latent Class Analysis
Function for Generating Random Names and a Dataset
Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Random Projection with Classification
Generate Random Strings
Testing randomness in R
Toolbox for Pseudo and Quasi Random Number Generation and RNG
Tests
Implementation of Random Variables
Occurrence Filtering, Geographic and Taxonomic Standardization
and Generation of Species Range Polygons
A Platform for the Study of Macro-Ecology of Life History Traits
Mid-Domain Effect and Species Richness Patterns
A Fast Implementation of Random Forests
Weighted Rank Aggregation
Model-Based Clustering for Multivariate Partial Ranking Data
Distance Based Ranking Models
Rank-Based Tests for General Factorial Designs
Rank-Hazard Plots
The Ranking Project: Visualizations for Comparing Populations
Ranking Responses in a Single Response Question or a Multiple
Response Question
Ranking of Nodes with Kernelized Score Functions
Fast Nearest Neighbour Search (Wraps ANN Library) Using L2
Metric
Fast Nearest Neighbour Search (Wraps ANN Library) Using L1
Metric
Reversal Association Pattern
Dynamic OpenAPI/Swagger Client
R API Datetime
Polygon lookup using kd trees
Reliable Accurate Prenatal non-Invasive Diagnosis R package
Rapid Automatic Keyword Extraction (RAKE) Algorithm
R API Serialization
Bindings to AppArmor and Security Related Linux Tools
Application Directories: Determine Where to Save Data, Caches,
and Logs
A Report Templating System
Miscellaneous (stats) helper functions with sane defaults for
reporting
Row and Position Tracheid Organizer
Representative and Adequate Prioritization Toolkit in R
Functions to import data from Arc/Info V7.x binary coverages
Testing Gene-Environment Interaction for Rare Genetic Variants
Ecological and biogeographical null model tests for comparing
rarefaction curves
Regularized Autoregressive Hidden Semi Markov Model
Calculation of Rarity Indices for Species and Assemblages of
Species
Solvers for Large Scale Eigenvalue and SVD Problems
Rasch Sampler
Supervised Raster Image Classification
Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Geographic Data Analysis and Modeling
An Improved Wrapper of Image()
Kernel Based Estimates on in-Memory Raster Images
A Raster Where Cells are Generic Objects
Visualization Methods for Raster Data
Routines for Solving Rate-Distortion Problems
Rate Limiting for R
Exact rate ratio test
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Confidence Intervals for Comparisons of Binomial or Poisson
Rates
Randomization Tests
Rating Scale Reduction Procedure
Manipulation of Rational Functions
Calculating Ratios Between Two Data Sets and Correction for
Adhering Particles on Plants
Standard Atmospheric profiles
Graphical User Interface for Data Science in R
Rattle Datasets
Parameter Estimation for the Averaging Model of Information
Integration Theory
Interface to the Bird-Watching Dataset Proyecto AVIS
R Actuarial Workshops
Age-Depth Modelling using Bayesian Statistics
Read and Write BAM (Binary Alignment) Files
Bayesian Optimization of Hyperparameters
R Interface to Brazilian Central Bank Web Services
BEFdata R package
Benchmarking routine for R
Robust Bent Line Regression
R Bayesian Evidence Synthesis Tools
The Beta Random Number and Dirichlet Random Vector Generating
Functions
Tools for 'Box Geometry Model' (BGM) Files and Topology for the
Atlantis Ecosystem Model
Reading and Background Subtraction in Videos
Interface to the 'Biodiversity' 'Heritage' Library
R Interface to LibBi
Interact with BioUML Server
Interface to the 'USGS' 'BISON' 'API'
R & bitcoin integration
R Package for the BitCoinCharts.com API
R Interface to 'Bloomberg'
Handling Linear Gaussian Bayesian Networks
BMRB Data Access and Visualization
R Interface for Bokeh
Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data
The Residual-Based Predictiveness Curve
Alternative Bootstrap-Based t-Test Aiming to Reduce Type-I Error
for Non-Negative, Zero-Inflated Data
Fusing R and OpenBugs and Beyond
Rbundler manages an application's dependencies systematically
and repeatedly
Ranking-Based Variable Selection
Relational Class Analysis
Calculation of the Integrated Flow of Particles Between Polygons
Access and Plot CanVec and CanVec+ Data for Rapid Basemap
Creation in Canada
Loglinear Models for Capture-Recapture Experiments
Calibration and Analysis of Radiocarbon Dates
This package builds maps with a full cartographic layout
'CARTOColors' Palettes
R/Cassandra interface
Conservation Assessment Tools
CBA Classifier for R
Large, Sparse Optimal Matching with Refined Covariate Balance
Optimal Subset Matching with Refined Covariate Balance
Parametric Bootstrapping to Control Rank Conditional Coverage
Date Functions for Swedish Cancer Data
Miscellaneous R Functions for Swedish Regional Cancer Centers
Computational Geometry
Interface to the 'CDK' Libraries
The CDK Libraries Packaged for R
R Cross Entropy Inspired Method for Optimization
Example Dataset for 'Rcell' Package
C++11 Header Files for 'cereal'
Analytical Procedures in Support of Brazilian Public Sector
External Auditing
Conjugate Gradient Minimization of Nonlinear Functions
A Simple Data Science Challenge System
Chess Move, Generation/Validation, Piece Placement/ Movement,
and Check/Checkmate/Stalemate Detection
Analyzing Archival Tagging Data
Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
rChoiceDialogs collection
Post-Processing of the Markov Chain Simulated by ChronoModel or
Oxcal
Reverse-Correlation Image-Classification Toolbox
Circos 2D Track Plot
A 'DBI' Interface to the 'Yandex Clickhouse' Database Providing
Basic 'dplyr' Support
Fetch Climate Data from Environment Canada
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather
GENeretor): a package to generate time series of climate
indices from RMAWGEN generations
R tools for integrating with the www.clinicalcodes.org
repository
Shiny/R Wrapper for 'clipboard.js'
Partially Clonal Populations Analysis
Linkable C++ clustering
R-to-Java Interface for 'CMA-ES'
Run 'R CMD check' from 'R' and Capture Results
R Commander
R Commander Miscellaneous Functions
R Commander Plug-in for Repeated-Measures ANOVA
Rcmdr Plug-In for Business and Customer Analytics
'Rcmdr' Plug-in GUI for Biclustering
Rcmdr Coin Plug-In
R commander Depth Tools Plug-In
R Commander Plugin for (industrial) Design of Experiments
Rcmdr plugin for Stat 4309 course
Plugin de R-Commander para el Manual 'EACSPIR'
Rcmdr Evidence Based Medicine Plug-in Package
Rcmdr EcoVirtual Plugin
Rcmdr plugin for time series
Export R Output to LaTeX or HTML
R Commander Plug-in for the EZR (Easy R) Package
Graphical User Interface for FactoMineR
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means
and Gustafson Kessel)
R Commander Plug-in for Fitting Generalized Waring Regression
Models
Rcmdr Support for the HH Package
An IPSUR Plugin for the R Commander
R Commander Plug-in for Data Visualization with 'ggplot2'
Rcmdr Plug-in for Low Flow Analysis
Graphical User Interface for Conducting Meta-Analyses in R
Adds menu items to produce mosaic plots and assoc plots to Rcmdr
R Commander Plug-in for MPA Statistics
R Commander Plug-in for University Level Applied Statistics
orloca Rcmdr Plug-in
R Commander Plug-in for Robust Principal Component Analysis
Rcmdr plots by group using lattice
Graphical POINT of view for questionnaire data Rcmdr Plug-In
Rcmdr plugin for quality control course
R Commander Plug-in for Risk Demonstration
R MTC Jags 'Rcmdr' Plugin
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE
Tools for sampling in Official Statistical Surveys
Rcmdr Plugin for Designing and Analyzing Single-case Experiments
SLC Rcmdr Plug-in
Rcmdr Sport Management Plug-In
Efficiently search the R help pages
Steepness Rcmdr Plug-in
R Commander Plug-in for the 'survival' Package
'Rcmdr' Plugin for Alpha-Sutte Indicator 'sutteForecastR'
Rcmdr Teaching Demos Plug-in
Graphical Integrated Text Mining Solution
UCA Rcmdr Plug-in
Tools for Manipulating and Summarizing CMIP5 Data
Interface to Colombos Compendia using the Exposed REST API
ColorBrewer Palettes
Functions to Support Extension Education Program Evaluation
Wraps the API for the Brazilian Chamber of Deputies
Computations on Conics
Client for the CORE API
A Collection of Small Text Corpora of Interesting Data
R Interface to CPLEX
Regions of Common Profiles Modelling with Mixtures-of-Experts
Seamless R and C++ Integration
R and C++11
Tools for Combinatorics and Computational Mathematics
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
'Rcpp' Interface to the APT Package Manager
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Rcpp bindings for the Boost Date_Time library
'Rcpp' Integration for the 'Blaze' High-Performance C++ Math
Library
'Rcpp' Bindings for the 'CCTZ' Library
Deprecated 'classic' 'Rcpp' 'API'
Examples using RcppClassic to interface R and C++
Read-Write Support for 'NumPy' Files via 'Rcpp'
'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Global Optimization by Differential Evolution in C++
Deep Learning Methods via Rcpp
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Examples using 'Rcpp' to Interface R and C++
'Rcpp' Bindings for the 'Faddeeva' Package
'Rcpp' Interface for Querying System Configuration Variables
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Rcpp Hidden Markov Model
Iterator Based Expression Template Expansion of Standard
Operators
'Rcpp' Integration for the 'MLPACK' Library
'MsgPack' C++ Header Files
'Rcpp' Integration for Numerical Computing Libraries
Parallel Programming Tools for 'Rcpp'
An Interruptible Progress Bar with OpenMP Support for C++ in R
Packages
R Bindings to the 'Quantuccia' Header-Only Essentials of
'QuantLib'
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
Efficient Rolling / Windowed Operations
R Interface to the Shark Machine Learning Library
Rcpp Bindings for Sequential Monte Carlo
'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
R-Friendly Threading in C++
Rcpp-Based Truncated Normal Distribution RNG and Family
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
XPtr Add-Ons for 'Rcpp'
Interface the xts API via Rcpp
'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
Interface to the Corpus Query Protocol
Web Crawler and Scraper
Securely Use Credentials Within R Scripts
Loading Criteo Data into R
Client for Various 'CrossRef' 'APIs'
Symmetric File Encryption Using GPG
R Interface to the CSDP Semidefinite Programming Library
Convex Switching Systems
Styling of Graphics using Cascading Style Sheets
CUR decomposition package
Robust Cure Models for Survival Analysis
General Network (HTTP/FTP/...) Client Interface for R
Ranked Choice Voting
Markdown Reference Manuals
Convert Rd to 'Roxygen' Documentation
Shrunken Centroids Regularized Discriminant Analysis
Basic Runtime Support for Datacanvas.io
'DataCite' Client for 'OAI-PMH' Methods and their Search API
Data access API for DataMarket.com
R Interface to the Data Retriever
Regression Discontinuity Estimation
Regression Discontinuity Design Application
Manipulation Testing Based on Density Discontinuity
Toolbox for Regression Discontinuity Design ('RDD')
Robust Data Envelopment Analysis (DEA) for R
Interact with the UK AIR Pollution Database from DEFRA
Relevant Dimension Estimation (RDE) in Feature Spaces
Client Library for The Guardian
A Collection of Functions to Experiment Dice Rolls
It perform Quality check on data
R interface to the dieharder RNG test suite
Dimension Reduction and Estimation Methods
Calculate Pairwise Distances
Distance Sampling Analyses
Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Local Randomization Methods for RD Designs
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Generating Various Numerical Representation Schemes of DNA
Sequences
R Interface to the 'Deutsche Nationalbibliothek (German National
Library) API'
Get the Category of Content Hosted by a Domain
An R Steam API Client for Valve's Dota2
Low-Level Interface to the '.NET' Virtual Machine Along the
Lines of the R C/Call API
Create Doxygen Documentation for Source Code
Update and Manipulate Rd Documentation Objects
Client for the Digital Public Library of America ('DPLA')
Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
A Rules Engine Based on 'Drools'
Rdrools JARs
Programmatic Interface to the 'Dropbox' API
Access for Dryad Web Services
Respondent-Driven Sampling
R Interface to DSDP Semidefinite Programming Library
Threads Environment for R
An R wrapper for the Data Science Toolkit API
RDS Tree Bootstrap Method
Density Tracking by Quadrature
A Microcontroller Interface
The rDVR package allows you to start stop and save a video
server from within R
Select and Download Climate Data from 'DWD' (German Weather
Service)
RE2 Regular Expression
React Helpers
Reactive Transport Modelling in 1d, 2d and 3d
Read Data Stored in DBC (Compressed DBF) Files
Calculate Readability Scores
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
Reads Mass Spectrometry Data in Bruker *flex Format
Read and Combine Multiple Data Files
Suite of Functions to Flexibly Read Data from Files
Read Acoustic HAC Format
Import Data in the JCAMP-DX Format
Reading Machine Learning Benchmark Data Sets in Different
Formats
Reads Mass Spectrometry Data in mzXML Format
Fast Reader for 'Wavefront' OBJ 3D Scene Files
Read and Write ODS Files
Read Text Out of Modern Office Files
Read Rectangular Text Data
Import 'Stata' Data Files
Import and Handling for Plain and Formatted Text Files
Read Excel Files
A Wrapper for the API of the Danish Housing Market Statistics
Multivariate VAM Fitting
Resampling-Based Adaptive Model Selection
Monotonize Point and Interval Functional Estimates by
Rearrangement
Regional Economic Analysis Toolbox
Empirical Bayes Estimation and Inference
R Client for the eBird Database of Bird Observations
Finite Mixture Modeling, Clustering & Classification
Build Regular Expressions in a Human Readable Way
Core Functionality for the 'rebus' Package
Date and Time Extensions for the 'rebus' Package
Numeric Extensions for the 'rebus' Package
Unicode Extensions for the 'rebus' Package
Relevant Component Analysis for Supervised Distance Metric
Learning
3D Reconstruction of Archaeological Excavations
R Interface to Echo Nest API
Redundancy Control in Pathways databases
Preprocessing Tools to Create Design Matrices
Ordination Methods for the Analysis of Beta-Diversity Indices
Compute the Rectangular Statistical Cartogram
A Simple and Flexible Recoder
Recombinate Nested Lists to Dataframes
Lab for Developing and Testing Recommender Algorithms
Book-Crossing Dataset (BX) for 'recommenderlab'
Jester Dataset for 'recommenderlab'
Session Reconstruction and Analysis
Record Linkage in R
Record Values and Record Times
Recommender System using Matrix Factorization
Computes Revisitation Metrics for Trajectory Data
IUCN Redlisting Tools
Recurrent Event Data Analysis
Companion Package to the Book 'R: Einführung durch angewandte
Statistik'
R Interface to REDCap
Interaction Between R and REDCap
Reddit Data Extraction Toolkit
Reconstruction of Daily Data - Precipitation
Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Markov Chain Monte Carlo Methods for Redistricting Simulation
RDF Library Bindings in R
Tools for the IUCN Red List of Ecosystems and Species
Applications of Empirical Dynamic Modeling from Time Series
Microsoft(r)-Inspired Color Palettes
REgularization by Denoising (RED)
R Bindings to 'hiredis'
Regression Trees with Random Effects for Longitudinal (Panel)
Data
References for R
Reference Intervals
EWAS using Reference-Free DNA Methylation Mixture Deconvolution
Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
API Wrapper for the UK REF 2014 Impact Case Studies Database
Cluster and Merge Similar Values Within a Character Vector
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Refining Data Table Using a Set of Formulas
Subsets with Reference Semantics
Regression with Functional Data
Interactive Plotting for Functional Data Analyses
Wavelet-Domain Regression with Functional Data
Tools for an Introductory Class in Regression and Modeling
Cluster analysis via regression coefficients
Detecting Mislabeled Samples in Genetic Data
Risk Estimation for Genetic and Environmental Traits
Wrappers Around 'base::grep()' for Use with Pipes
Readable Regular Expressions
Regular Expressions in 'shiny' Select Lists
Helper Functions for Regression Analysis
Infrastructure for R Package Registries
Simulation-Based Regularized Logistic Regression
Network-Based Regularization for Generalized Linear Models
Enhanced Regression Nomogram Plot
Nonparametric Regression
Gaussian Linear Models with Linear Covariance Structure
Expander Functions for Generating Full Gradient and Hessian from
Single-Slot and Multi-Slot Base Distributions
Random Subspace Method (RSM) for Linear Regression
Variable Selection and Regression
Regularized Structural Equation Modeling
Non-Parametric Bayesian Spectrum Estimation for Multirate Data
Detect and Test Regular Sequences and Subsequences
Regression testing
Regression Tools
Regularized Simultaneous Component Based Data Integration
Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Data Only: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Reinforcement Learning
Model-Free Reinforcement Learning
Functions from "Reinsurance: Actuarial and Statistical Aspects"
Search and Install Missing Packages
Reliability Coefficients
Item Analysis Package with Standard Errors
Relabel Loadings from MCMC Output for Confirmatory Factor
Analysis
Relative importance of regressors in linear models
Maximum Likelihood Estimation of Relatedness using EM Algorithm
Data Structures and Algorithms for Relations
relax -- R Editor for Literate Analysis and lateX
Relaxation of glmnet models (as in relaxed lasso, Meinshausen
2007)
Relaxed Lasso
Relative Distribution Methods
Compute Relative Entropy
Relational Event Models
Functions for estimating parameters in software reliability
models
Tools for Structural Reliability Analysis
Package for some probability distributions
Relative Contribution of Effects in a Regression Model
Relative Importance PCA Regression
Relationship Inference for DNA Mixtures
Relative Simulator
Relative Survival
Relative Value Analysis
Relational Event Models (REM)
Match Regular Expressions with a Nicer 'API'
Tidy Output from Regular Expression Matching
Insert and Extract "Reminders" from Function Comments
Remix your data
Extensible Markov Model for Modelling Temporal Relationships
Between Clusters
Regularized Multivariate Regression for Identifying Master
Predictors
Empirical Orthogonal Teleconnections in R
Remote R: Control a Remote R Session from a Local One
R Package Installation from Remote Repositories, Including
'GitHub'
Epistemic Network Analysis
Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Renewal Method for Extreme Values Extrapolation
GUI for Renext
Entrez in R
R interface to the Encyclopedia of Life
Reordering the dendrogram according to the class labels
GWAS for Multiple Observations on Related Individuals
Non-Normal Repeated Measurements Models
Global tests for expression data of high-dimensional sets of
molecular features
Replicability Analysis for Multiple Studies of High Dimension
Tools for Handling EpiJSON (Epidemiology Data) Files
Statistical Metrics for Multisite Replication Studies
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
Replication Interval Functions
Reliable Adaption of Big Data with R
Miscellaneous Tools for Reproducible Research
A Data-Centered Data Flow Manager
Repeated Measures Proportional Odds Logistic Regression
Microsoft Word and PowerPoint Documents Generation
External Jars Required for Package 'ReporteRs'
A General Message and Error Reporting System
An Easy Way to Report Regression Analysis
An Easy Way to Report ROC Analysis
Tools for automatically generating reproducible clinical report
Assist the Workflow of Writing Academic Articles and Other
Reports
Generate LaTeX Tables of Descriptive Statistics
R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Serializable Representations
Determine the representativity of two multidimensional data sets
Reproducible Research Tools
Prepare Reproducible Example Code for Sharing
Reproduce Statistical Analyses and Meta-Analyses
A Set of Tools that Enhance Reproducibility Beyond Package
Management
Regulatory DNA Element Prediction
Examples of Recursive Lists and Nested or Split Data Frames
Powerful Classes for HTTP Requests and Responses
R/EQS Interface
High Level 'HTTP' Client
R Source Code Modularizer
General Purpose Client for 'ERDDAP' Servers
Reordering and/or Reflecting Factors for Simulation Studies with
Exploratory Factor Analysis
Recurrent Event Regression
Randomer Forest
Resampling Functions
Data Sets for Mathematical Statistics with Resampling in R
Regression and Similarity Evaluation for Memory-Based Learning
in Spectral Chemometrics
Tools for Analysis, Design, and Operation of Water Supply
Storages
Flexibly Reshape Data
Flexibly Reshape Data: A Reboot of the Reshape Package
A GUI for the reshape2 and plyr packages
electrical properties of resistor networks
Resource Selection (Probability) Functions for Use-Availability
Data
Tools for Conducting Respirometry Experiments
Integrates R and Essentia
RcmdrPlugin Easy Script Templates
R Interface to RESTful Web Services
Functions for Working with the 'www.estimize.com' Web Services
Robust Estimation of Location and Scatter
Multivariate Normal Restricted by Affine Constraints
Restricted Statistical Estimation and Inference for Linear
Models
Build Resumes with R
RethinkDB Client
Interface to 'Python'
Reaction Time Analysis
Retinal Reconstruction Program
Talk to the NCBI EUtils
Repeated Function Evaluation for Sensitivity Analysis
Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Revealed Preferences and Microeconomic Rationality
R Markdown Format for 'reveal.js' Presentations
Reverse Ecology Analysis on Microbiome
Reverse Engineering Censored, Decoupled Residential Data for
Population Density Estimation
Reverse Geocoding with the Photon Geocoder for OpenStreetMap,
Google Maps, and Bing
Adjustment of Survey Respondent Weights
Friendly Regular Expressions
R Interface to Experigen
R Wrappers for EXPOKIT; Other Matrix Functions
Access to Facebook API via R
A Collection of Efficient and Extremely Fast R Functions
Get Seismic Data from the International Federation of Digital
Seismograph Networks
Random Ferns Classifier
Rapid Feasible Generalized Least Squares
Importance Measure and Selection for Groups of Variables with
Random Forests
An R Interface to 'figshare'
RFinanceYJ
Inference for Random Forests
R Interface to 'FishBase'
'Programmatic Interface to the 'openfisheries.org' API'
Rank Estimation for Linear Models
Basic R Interface to the 'FLANN' C++ Library
Tools to analyse RFLP data
Multivariate Analysis of Metabolomics Data using Random Forests
MarkLogic NoSQL Database Server in-Database Analytics for R
R Interface to 'FOAAS'
Data Integration Feature for Force.com and Salesforce.com
Code Examples to Accompany the Book "R for Dummies"
BATWING for calculating forensic trace-suspect match
probabilities
R Source Code Formatter
Estimate Permutation p-Values for Random Forest Importance
Metrics
R/FrEAK interface
Feasible Solution Algorithm for Finding Best Subsets and
Interactions
FTRL-Proximal Algorithm
Random Forests Model Selection and Performance Evaluation
A Google Analytics API Client
An Interface to the GA4GH API
Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Robust Generalized Additive Model
Gamma convolutions for methylation array background correction
The R Genome Browser
Interface to the Global 'Biodiversity' Information Facility API
LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network
Reconstruction
Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
Regularized and Sparse Generalized Canonical Correlation
Analysis for Multiblock Data
R Interface for GCVPACK Fortran Package
Bindings for the 'Geospatial' Data Abstraction Library
Wrapper for 'GDAX' Cryptocurrency Exchange
Random Sampling Distribution C++ Routines for Armadillo
Tools to Generate Vector Time Series
Tools to Generate Daily-Precipitation Time Series
R packages for genetics research
R Version of GENetic Optimization Using Derivatives
Get Information from the GeoAPI
Geometric Density Estimation
IP Address Geolocation
Additional Functions for 'geoPAT' 2.0
Interface to Geometry Engine - Open Source ('GEOS')
Build, Import and Export GEXF Graph Files
Interface Between R and 'GGobi'
Access WHO Global Health Observatory Data from R
Create quizzes in GIFT Format
3D Visualization Using OpenGL
R Interface to Global Biotic Interactions
R/GNU Linear Programming Kit Interface
'rgl' in 'htmlwidgets' Framework
R Interface for Gnuplot
GoodData API Client Package
R Wrapper for the Google Analytics API
Unsampled Data in R for Google Analytics Premium Accounts
R Interface to Google Fit API
Overlays on Static Maps
Applied Geochemistry EDA
Data and Functions from the Book R Graphics, Second Edition
Interface Between GRASS 7 Geographical Information System and R
Interface to 'gretlcli'
Groovy Language Integration
R Bindings for Gtk 2.8.0 and Above
Data frame editor and dialog making wrapper for RGtk2
Goodman-Weare Affine-Invariant Sampling
DBI/RJDBC interface to h2 Database
Interface to the 'Handsontable.js' Library
Renewal Hawkes Process
Retrieve data sets from the HealthData.gov data API
Utilities Parsing 'HMMER' Results
Hydrologic Modelling System for R Users
Random Heteroscedastic Nested Error Regression
Rho for Inter Rater Reliability
Side Effect Risks in Hospital : Simulation and Estimation
Permits *apply() Style Dispatch for 'HPC'
Benchmarks for High-Performance Computing Environments
Control the Number of Threads on 'BLAS'
Interface between HPCC and R
Heart Rate Variability Analysis of ECG Data
Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis
Connect to 'R-hub'
Wrapper for the 'Datamuse' API to Find Rhyming and Associated
Words
ri: R package for performing randomization-based inference for
experiments
Randomization Inference for Treatment Effects on a Binary
Outcome
Radiomics Image Analysis Toolbox for Grayscale Images
A Diceware Passphrase Implementation
Computes and Compares Species Richnesses
Ridge Regression with Automatic Selection of the Penalty
Parameter
R Package for Ridge Fusion in Statistical Learning
Interface to the iDigBio Data API
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Accesses Weather Data from the Iowa Environment Mesonet
Client for 'Neuroscience' Information Framework 'APIs'
Random Iterated Function System (RIFS)
ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
Read 'ImageJ' Region of Interest (ROI) Files
Extract the Colors from Images
Access iNaturalist Data Through APIs
Indexing for R
Circular / Ring Buffers
An Installation Framework for Shiny Apps
C++ Classes to Embed R in C++ Applications
R Individual Specialization (RInSp)
Wrapper for the 'Intro.js' Library
A Swiss-Army Knife for Data I/O
Analysis of Quaternary Science Data
Utils for IP4 and IP6 Addresses
R Image Processing and Analysis
High-Dimensional Ising Model Selection
Computes 26 Financial Risk Measures for Any Continuous
Distribution
Computation of Risk-Based Portfolios
Risk Management
Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks
Riskset ROC curve estimation from censored survival data
Risk Quantification for Stock Portfolios under the T-Copula
Model
Download Content from NCBI Databases
Isothermal Titration Calorimetry (ITC) Data Analysis
The Right Editor to Write R
Integrated Taxonomic Information System Client
Randomization Inference Tools
Robust instrumental variables estimator
River Network Distance Computation and Applications
Read, Analyze and Plot River Networks
Sankey or Ribbon Plots
River Visualisation Tool
In vitro in vivo correlation linear level A
Steady and Unsteady Open-Channel Flow Computation
Reversible Jump MCMC for the Analysis of CGH Arrays
A Clean, Whitespace-Sensitive Template Language for Writing HTML
Analysis of Data Acquired Using the Receiver Operating
Characteristic Paradigm and Its Extensions
Bayesian Graphical Models using MCMC
Low-Level R to Java Interface
Provides access to databases through the JDBC interface
Miscellaneous useful functions
Reversible-Jump MCMC Using Post-Processing
R-interface to Gene Drop Simulation from JPSGCS
R interface of the Gateway to Advanced and User-friendly
Statistics Service
R Interface to SDMX Web Services
JSON for R
Consumer for APIs that Follow the JSON API Specification
Serialize R objects to JSON, JavaScript Object Notation
Interactive Graphs with R
Read and Write 'JSON-stat' Data Sets
R interface to Python via Jython
Using Apache 'Kafka' Messaging Queue Through 'R'
External Jars Required for Package 'rkafka'
R/KEA Interface
R/KEA Interface Jars
Using Keel in R Code
Datasets from KEEL for it Use in RKEEL
Java Executable .jar Files for 'RKEEL'
(Kernel) Isotope Niche Estimation
Fetch Klout Scores for Twitter Users
Hybrid Mortality Estimation
Random KNN Classification and Regression
Topological Analysis of Knotted Proteins, Biopolymers and 3D
Structures
Mann-Kendall Test, Seasonal and Regional Kendall Tests
Read Key/Value Pair Observations
Functions and Datasets Required for ST370 class
Data Exchange Between R and LabKey Server
Lake Physics Tools
Functions for Base Types and Core R and 'Tidyverse' Features
Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Analyze and Design Repeated Low-Dose Challenge Experiments
Bayesian LDA for Mixed-Membership Clustering Analysis
Text Generation from Data
Estimates, Plots and Evaluates Leaf Angle Distribution
Functions, Calculates Extinction Coefficients
Interactive Maps with R and Leaflet
R Interface to RNG with Multiple Streams
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
LiDAR Data Processing and Visualization
R Interface to LINDO API
Access to the LinkedIn API via R
Iterative Solvers for (Sparse) Linear System of Equations
A Toolbox for Non-Tabular Data Manipulation
Robust Fitting of Linear Model
Rank-Based Estimation and Prediction in Random Effects Nested
Models
Utilities for Writing to 'LibreOffice Writer' Documents
R Parallel Implementation of Local Outlier Factor(LOF)
Process Logical Operations
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive
Models
Reinforcement Learning Trees
R Interface to the 'LTP'-Cloud Service
Solving Ordinary Differential Equations to Understand
Luminescence
'Shiny' Applications for the R Package 'Luminescence'
'Lex' and 'Yacc'
Weighted Rasch Modeling and Extensions using Conditional Maximum
Likelihood
Revenue Management and Pricing Package
Exact Confidence Intervals for Random Effects Meta-Analyses
Refined Moving Average Filter
Fit Multi-Modal Mallows' Models to ranking data
Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Client for 'mapshaper' for 'Geospatial' Operations
Client for the 'Mapzen' API
Database Interface and 'MariaDB' Driver
Detect Marine Heat Waves and Marine Cold Spells
R Code for Mark Analysis
Dynamic Documents for R
Read and Write 'Matlab' Files
Multi-Site Auto-Regressive Weather GENerator
Functions for fitting Markov models
The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Repeated Measures Correlation
Risk Model Decision Analysis
HTML Output Formats and Templates for 'rmarkdown' Documents
Helper Functions for Rmd Documents
'R' 'Markdown' Format for 'shower' Presentations
An 'Rcpp' Interface for Eunjeon Project
Mediation Analysis Confidence Intervals
Meta-analysis
An Individual-Based Population Genetic Simulation Environment
Multivariate GARCH Models
Data Mining Classification and Regression Methods
Rmisc: Ryan Miscellaneous
Supervised, Unsupervised, Semi-Supervised Classification with
MIXture MODelling (Interface of MIXMOD Software)
Combining Mixture Components for Clustering
API for Mixpanel
Sundry Discrete Probability Distributions
Miscellaneous Collection of Functions for Medical Data Analysis
Connect R with MOA for Massive Online Analysis
External jars required for package RMOA
A Monadic Pipeline System
MongoDB Client for R
The R-to-MOSEK Optimization Interface
Automate Mouse Clicks and Send Keyboard Input
Rounded Mixture Package. Performs Probability Mass Function
Estimation with Nonparametric Mixtures of Rounded Kernels
R MPFR - Multiple Precision Floating-Point Reliable
Interface (Wrapper) to MPI (Message-Passing Interface)
Causal Mediation Analysis Using Weighting Approach
Importing Data from Loligo Systems Software, Calculating
Metabolic Rates and Critical Tensions
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to
generate daily time series of rainfall from monthly mean values
Regression Modeling Strategies
Root-mean-square goodness-of-fit test for simple null hypothesis
Amazing Random Facts About the World's Greatest Hacker
Quickly View Data Frames in 'Excel', Build Folder Paths and
Create Date Vectors
Signal-Noise Separation in Random Matrices by using Eigenvalue
Spectrum Analysis
Distributions, Statistics and Tests derived from Random Matrix
Theory
Wrapper for MUMPS Library
Utilities for Nonlinear Regression and Repeated Measurements
Models
Database Interface and 'MySQL' Driver for R
Log-Linear Poisson Graphical Model with Hot-Deck Multiple
Imputation
Wrapper for several R packages and scripts to automate RNA-seq
analysis
RNA Secondary Structure Module Mining, Comparison and Plotting
RNA Secondary Structure Comparison and Module Mining
World Map Data from Natural Earth
World Vector Map Data from Natural Earth Used in 'rnaturalearth'
Using Graphs as a Navigational Infrastructure
Some image data used in the RnavGraph package demos
Visualization of High-Throughput Data on Large-Scale Biological
Networks
EUtils libraries for use in the R environment
Obtain, Organize, and Visualize NCEP Weather Data
An Interface to the Nexus Class Library
Risk Neutral Density Extraction Package
Build and Grade Multiple Choice Exams with Randomized Content
Neo4j Driver for R
XML-RPC Interface to NEOS
Fast Network Modularity and Roles Computation by Simulated
Annealing (Rgraph C Library Wrapper for R)
Interface to NetCDF Datasets
Provides an Interface to the Agent-Based Modelling Platform
'NetLogo'
Resistance Relationship Networks using Graphical LASSO
Tools for Analyzing Content Homogeneity and News Diffusion using
Computational Text Analysis
Semantically Rich I/O for the 'NeXML' Format
Seeding the Default RNG with a Numeric Vector
Utility functions for working with Random Number Generators
Toolbox for WELL Random Number Generators
Random number generator WELL19937a with 53 or 32 bit output
Facilitates Analysis of CDC NHANES Data
Fast R and C++ Access to NIfTI Images
Image Registration Using the 'NiftyReg' Library
Satellite Nightlight Data Extraction
Robust Nonnegative Matrix Factorization
Recurrent Neural Network
'NOAA' Weather Data from R
An Interface to the NOAA Operational Model Archive and
Distribution System
Omnibus Test for Genetic Association Analysis using the Rank
Normal Transformation
Interface to the National 'Phenology' Network 'API'
Download NRCS Data
UK National River Flow Archive Data from R
Interface to the Numerai Machine Learning Tournament API
Find Free Versions of Scholarly Publications via the oaDOI
Service
Robust Analysis of High Dimensional Data
R Interface For OAuth
Robust Asymptotic Statistics
Interpolation Grids for Packages of the 'RobASt' - Family of
Packages
Robust Estimation for Compositional Data
Robust Correlations
R functions for robust statistics
Forecasting Time Series with Robust Exponential Smoothing
Robust Time Series Filters
Ocean Biogeographic Information System (OBIS) Client
Optimally Robust Influence Curves and Estimators for Location
and Scale
Infinitesimally robust estimators for preprocessing omics data
(Robust) Mediation Analysis
Generation of Dynamic Coappearance Matrices Within Texts
A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Robust Periodogram and Periodicity Detection Methods
Three-Step Regression and Inference for Cellwise and Casewise
Contamination
Optimally robust influence curves for regression and scale
Robust Regularized Singular Value Decomposition
Data Management for Hydrology and Beyond Using the Observations
Data Model
Robust Variance Meta-Regression
Port of the S+ "Robust Library"
Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Robust ARIMA Modeling
Basic Robust Statistics
Robust Bayesian Linear Mixed-Effects Models using ABC
Robust Mixture Discriminant Analysis
Robust Methods using Exponential Tilt Model
An Object Oriented Solution for Robust Factor Analysis
Robust Estimation for Generalized Additive Models
Robust Gaussian Stochastic Process Emulation
Robust Methods for High-Dimensional Data
Robust Linear Mixed Effects Models
Robust Estimation of the Generalized log Gamma Model
Robust Rank-Based Tests
Methods for robust rank aggregation
An Extended Rao-Stirling Diversity Index to Handle Missing Data
Robust Regression Functions
Robust Bayesian Small Area Estimation
Robust Estimation of Variance Component Models
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Construction of diagnostic or prognostic scoring system and
internal validation of its discriminative capacities based on
ROC curve and 0.633+ boostrap resampling
ROC based classification
ROC for Cross Validation Results
Regression Estimation and Presentation
Rock fabric and strain analysis tools
Non-Inferiority Test for Paired ROC Curves
Robust Rank Correlation Coefficient and Test
Visualizing the Performance of Scoring Classifiers
Receiver Operating Characteristics Surface
Time-Dependent ROC Curve Estimators and Expected Utility
Functions
Non-parametric estimation of ROC curves without Gold Standard
Test
Wrapper Functions for 'ODAM' (Open Data for Access and Mining)
Web Services
ODBC Database Access
Provides Access to Databases Through the ODBC Interface
Parameterized Queries Extension for RODBC
Optimal Discriminating Designs
Ordinary Differential Equation (ODE) Solvers Written in R Using
S4 Classes
A Code Generator for ODE-Based Models
Fetch Hillary Rodham Clinton's Emails
R interface to Oracle Data Mining
R Optimization Infrastructure
'ROI' Optimization Problems Based on 'globalOptTests'
R Optimization Infrastructure: 'MIPLIB' 2010 Benchmark Instances
'ROI' Optimization Problems Based on 'NETLIB-LP'
'alabama' Plug-in for the 'R' Optimization Infrastructure
'Clp (Coin-or linear programming)' Plugin for the 'R'
Optimization Interface
ROI Plug-in CPLEX
'DEoptim' and 'DEoptimR' Plugin for the 'R' Optimization
Interface
'ECOS' Plugin for the 'R' Optimization Infrastructure
'ROI' Plug-in 'GLPK'
ROI Plug-in {ipop}
'lp_solve' Plugin for the 'R' Optimization Infrastructure
'Multi-Solution' Binary Linear Problem Plug-in for the 'R'
Optimization Interface
'nloptr' Plug-in for the 'R' Optimization Infrastructure
'optimx' Plug-in for the 'R' Optimization Infrastructure
ROI Plug-in {quadprog}
'SCS' Plug-in for the 'R' Optimization Infrastructure
ROI Plug-in SYMPHONY
Rolling Statistics
Error Tracking and Logging
Rolling Entry Matching
Moving-Window Add-on for 'plyr'
Finding Optimal Three-Group Splits Based on a Survival Outcome
Identifying Trait-Relevant Functional Annotations
Plots Surfaces of Rates of Mortality Improvement
Read and Search Interface to the 'HL7 FHIR' REST API
Rook - a web server interface for R
Reconstructing Ordered Ontogenic Trajectories
Finds Roots, Extrema and Inflection Points of a Curve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Distribution of Largest Root for Single and Double Wishart
Settings
Model Selection with FDR Control of Selected Variables
Accesses Air Quality Data from the Open Data Platform OpenAQ
Access OpenDota Services in R
R Interface to OpenFIGI
R Package for the OpenSecrets.org API
R Interface to OpenWeatherMap API
Reproducible Data Retrieval from the Roper Center Data Archive
Optimally Robust Estimation
Optimally robust estimation - old version
R Optimizely API
Optimally robust estimation for regression-type models
Matrix Reconstruction from a Few Entries
OCI Based Oracle Database Interface for R
Interface to the 'Orcid.org' 'API'
Robust Ordinal Regression UTADIS
ROSE: Random Over-Sampling Examples
Rosette API
Plot Raster Map Tiles from Open Street Map and Other Sources
Robust Sparse PCA using the ROSPCA Algorithm
Fit and Deploy Rotation Forest Models
Tools for Working with Rotation Data
Rothermel fire spread model for R
Interface to the 'Open Tree of Life' API
Roughened Random Forests for Binary Classification
Simplification of Decision Tables using Rough Sets
Data Analysis Using Rough Set and Fuzzy Rough Set Theories
A Simple Router for HTTP and WebSocket Requests
Row-Based Functions for R Objects
In-Line Documentation for R
Royston's H Test: Multivariate Normality Test
Phylogenetic ANalyses of DiversificAtion
Simple interactive controls for R using the tcltk library
Recursive Partitioning and Regression Trees
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Tools for parsing and manipulating rpart objects, including
generating machine readable rules
Code for integer partitioning
Classification trees for ordinal responses
Recognising Visual Charting Patterns in Time Series Data
RobustPCA: Decompose a Matrix into Low-Rank and Sparse
Components
Tools for the Construction of Clinical Code Lists for Primary
Care Database Studies
RPCLR (Random-Penalized Conditional Logistic Regression)
Read, Write, Visualize and Manipulate PDB Files
Pacific Decadal Oscillation Index Data
Tools for Chromatographic Column Characterization and Modelling
Chromatographic Peak
Random Projection Ensemble Classification
Reduced Piecewise Exponential Estimate/Test Software
Response Probability Functions
Easy Interface to Advanced PostgreSQL Features
Fast Simulation of Normal/Exponential Random Variables and
Stochastic Differential Equations / Poisson Processes
Interface to PHAST Software for Comparative Genomics
An R interface for PHYLIP
Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
R Bindings for the 'PicoSAT' SAT Solver
Access Pinterest API
Build Powerful Pivot Tables and Dynamically Slice & Dice your
Data
Interface to the Search 'API' for 'PLoS' Journals
R as a Plotting Engine
Graphical User Interface (GUI) for Interactive R Analysis
Sessions
Recursively Partitioned Mixture Model
Recursive Partitioning for Modeling Survey Data
Converter and Interpreter for Reverse Polish Notation
Expressions
Point and Figure Package
Polyhedra Database
PDF Tools Based on Poppler
Random Portfolio Generation
R Interface to a 'PostGIS' Database
Managing Animal Movement Data with 'PostGIS' and R
'Rcpp' Interface to 'PostgreSQL'
R Interface to the 'PostgreSQL' Database System
Sample Size Computations Controlling the Type-II Generalized
Family-Wise Error Rate
Resolvable partially pairwise balanced design and Space-filling
design via association scheme
Reads, Annotates, and Normalizes Reverse Phase Protein Array
Data
Regularized PQL for Joint Selection in GLMMs
Interface to Praat
Database Preferences and Skyline Computation
DBI Connector to Presto
Estimating Disease Prevalence from Registry Data
Functions for Working with 'Eprime' Text Files
Adaptive Builder for Formatted Strings
Finding Files in Project Subdirectories
R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Rank Preserving Structural Failure Time Models
Recursive Partitioning Survival Trees
Statistics for psychiatric research
Goodness of Fit Tests for High-Dimensional Linear Regression
Models
Repeatability Estimation for Gaussian and Non-Gaussian Data
An Interface to the PubChem Collection
ProPublica API Client
R Interface to the Pushbullet Messaging Service
ArcGIS Geoprocessing in R via Python
Package Allowing R to Call Python
R-Based Qualitative Data Analysis
Integrating R with QGIS
Penalized Quantile Regression
Seismic Hypocenter Determination
R Interface to the 'QuantLib' Library
Statistical Methods for the Randomized Response Technique
Matrix Population Models
Real-Time Adaptive Penalization for Streaming Lasso Models
Estimating Replication Rate for Genome-Wide Association Studies
Connecting R and 'Raven' Sound Analysis Software
Ridge Regression and Other Kernels for Genomic Selection
Re-parametrization of RR-BLUP to allow for a fixed residual
variance
Scalable Robust Estimators with High Breakdown Point
Robust Methods for Multiway Data Analysis, Applicable also for
Compositional Data
Robust Multivariate Methods for High Dimensional Data
Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Environment for Evaluating Recommender Systems
"Redis" Key/Value Database Client
'IUCN' Red List Client
R Interface to the 'Redshift' Database
R Client for OpenRefine API
Visualization for Norwegian Health Quality Registries
Invoke 'Repast Simphony' Simulation Models
Regularized Random Forest
Fitting Distributions to Given Data or Known Quantiles
Robust Regularized Linear Discriminant Analysis
Secondary Structure Plotting for RNA
Road Condition Analysis
Reduced-Rank Regression
Reduced-Rank Regression
Correlation and Regression Analyses for Randomized Response Data
Randomized Response Techniques for Complex Surveys
Response Surface Analysis
Data related to the book "R Statistical Application Development
by Example"
Robust Small Area Estimation
SAGA Geoprocessing and Terrain Analysis in R
General Resampling Infrastructure
MCMC Sampling of Gene Genealogies Conditional on Genetic Data
Ports the Workflow of "Resampling Stats" Add-in to R
SAP Netweaver RFC connector for R
Functions to Create and Evaluate Search and Rescue Plans
Random Sampling Association Rules from a Transaction Dataset
Tools, Classes, and Methods for Interfacing with SaTScan
Stand-Alone Software
R Wrapper for 'SauceLabs' REST API
An R Package for Stepwise Cluster Analysis
Rao-Scott Cochran-Armitage by Slices Trend Test
Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
SciMark 2.0 Benchmark for Scientific and Numerical Computing
Client for Rserve
Deployment Interface for R Markdown Documents and Shiny
Applications
Scopus Database 'API' Interface
A Method to Download Department of Education College Scorecard
Data
Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis
Tools for Reading SDMX Data and Metadata
Stream Editing
Borenstein Analysis
Estimating the Proportion of Genetically Modified Seeds in
Seedlots via Multinomial Group Testing
Seismic Time Series Analysis Tools
R Bindings for 'Selenium WebDriver'
Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Analyse Sentiment of English Sentences
Binary R server
Slow Feature Analysis in R
Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Robust Sparse Gaussian Graphical Modeling via the
Gamma-Divergence
Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Siena - Simulation Investigation for Empirical Network Analysis
Robust Signature Selection for Survival Outcomes
R Simple Image Mosaic Creation Library
Remote Sensing and Image Processing
R Client for Adobe Analytics API V1.4
Robust Sparse K-Means
A Stemming Algorithm for the Portuguese Language
Submit R Calculations to a Slurm Cluster
Response-Surface Analysis
Loading Facebook and Instagram Advertising Data from
'Smartly.io'
Get Real-Time Meteorological Data in SMET Format
Remote Sensing for Movement Ecology
Neural Networks using the Stuttgart Neural Network Simulator
(SNNS)
Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web
Efficient Score Statistics for Genome-Wide SNP Set Analysis
Download or Upload 'Socrata' Data Sets
El Nino/Southern Oscillation (ENSO) and Related Climate Indices
General Non-Linear Optimization
R to Solr Interface
Somoclu
Adapt Numerical Records to Fit (in)Equality Restrictions
R Interface for H2O Sparkling Water
Solvers for Large Scale Eigenvalue and SVD Problems
Conversion Between Attitude Representations of DCM, Euler
Angles, Quaternions, and Euler Vectors
RNA-Seq Power Simulation
R-Squared and Related Measures
'SQLite' Interface for R
SQL Server R Database Interface (DBI) and 'dplyr' SQL Backend
Statistical Downscaling Toolkit for Climate Change Scenario
using Non Parametric Quantile Mapping
A Collection of Methods for Singular Spectrum Analysis
Implementations of Semi-Supervised Learning Approaches for
Classification
Simulation of Supply Reservoir Systems using Standard Operation
Policy
Stack Data Type as an 'R6' Class
Persistent Fast Amortized Stack and Queue Data Structures
R Interface to Stan
Bayesian Applied Regression Modeling via Stan
Simulation Studies with Stan
Tools for Developing R Packages Interfacing with 'Stan'
A Bit of Glue Between R and Stata
R Interface for China National Data
Random orthonormal matrix generation on the Stiefel manifold
Tools for Remote Sensing Data Analysis
Simulate and Develop Streaming Processing in [R]
Generalized Survival Models
Streams of Random Numbers
A Convenience Interface for the Stripe Payment API
Safely Access the RStudio API
Subgroup Discovery and Analytics
Interface to 'Sunlight' Foundation 'APIs'
Design of Rotatable Central Composite Experiments and Response
Surface Analysis
Manipulating 'Freesurfer' Generated Data
Robust Estimation of the Proportion of Treatment Effect
Explained by Surrogate Marker Information
Design and Analysis of Disease Surveillance Activities
Geographic Information System Application
Randomized Singular Value Decomposition
Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
An R SVG graphics device
An R SVG Graphics Device with Dynamic Tips and Hyperlinks
Plot and Save Customised Swiss Maps
SYMPHONY in R
R interface to SymPy computer algebra system
Tic-Tac-Toe Package for R
Tabular Reporting Functions
Random Generation of Contingency Tables
Manage and manipulate large collections of R objects stored as
tape-like files
Discretization of AR(1) Processes
Taxometric Analysis
Tools for analyzing sales report files of iTunes Connect
Robust Tail Dependence Estimation
Response Time Distributions
The rtematres API package
Tools for Tensor Analysis and Decomposition
R6 Objects for Text and Data
TextRank for Korean
Automatic Text Classification via Supervised Learning
Functions for calculation of texture metrics for Grey Level
Co-occurrence Matrices
Rich Text Format (RTF) Output
Transcription Factor Binding Site Identification Tool
Article Formats for R Markdown
Tide Heights
Read and Write TIFF Files
Client for New York Times 'APIs'
Supports the Analysis of RTI MicroPEM Output Files
Inequality, Welfare and Poverty Indices and Curves using the
EU-SILC Data
Rarefaction Tool Kit
'STK++' Core Library Integration to 'R' using 'Rcpp'
Truncated Newton Function Minimization with Bounds Constraints
Visualization for Seismic Tomography
Interpolation of Data with Variable Spatial Support
Analyze and Forecast Credit Migrations
Analyze Download Logs from the CRAN RStudio Mirror
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
A Simple R-Based Implementation of a Trie (A.k.a. Digital
Tree/Radix Tree/Prefix Tree)
Trends and Indices for Monitoring Data
Raster Time Series Analysis
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
Implementation
Typed JSON
'ttf2pt1' Program
Convert Text into Speech
Shiny Apps for Plotting and Exploratory Analysis
The R Implementation of the 't-walk' MCMC Algorithm
Collecting Twitter Data
A strong type system for R
Interface to 'typeform' Results
R package to detect character encoding
Implementation of Unobserved Components Model (UCM)
R Bindings for the UCR Suite
Univariate GARCH Models
Tidy Data Validation Reports
Data and Functions for USA State and County Unemployment Data
R Unit Test Framework
Convert 'RUnit' Test Functions into 'testthat' Tests
Runiversal - Package for converting R objects to Java variables
and XML
Interface Utilities, Model Templates, Parallel Computing Methods
and Additional Distributions for MCMC Models in JAGS
R Interface to the UNU.RAN Random Variate Generators
A GUI for the UNU.RAN random variate generators
Interface to USDA Databases
Ratio-of-Uniforms Simulation with Transformation
Detect and Remove Unwanted Variation using Negative Controls
Simulation-Based Random Variable Objects
Testing and Plotting Procedures for Biostatistics
R-Values for Ranking in High-Dimensional Settings
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
R/Package Version Check
Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Easily Harvest (Scrape) Web Pages
Rare Variants Association Analyses with Family Data
R Graphics Devices for Vector Graphics Output
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Calling haplotype-based and variant-based pedigree
disequilibrium test for rare variants in pedigrees
Play Video Poker with R
'ViennaCL' C++ Header Files
High Performance Algorithms for Vine Copula Modeling
Variable Metric Nonlinear Function Minimization
Calculates the Distance Between Voter and Multiple Polling
Locations
R Interface to the Vowpal Wabbit
Methods for Family-Based Rare-Variant Genetic Association Tests
Probability of Sharing Rare Variants among Relatives
population control weighted rare-variants TDT
Rare Variant Tests
API to Melbourne Pedestrian Data
R Client for the Star Wars API
Time-Frequency Analysis of 1-D Signals
A package for accessing World Bank climate data
Detects spatial outliers using a Random Walk on Bipartite Graph
Random Walk Covariance Models
plotting custom sequence logos
R/Weka Interface
R/Weka Interface Jars
R Wireless, Forward Error Correction
Wiener Process Distribution Functions
Interface for the 'Wildbook' Wildlife Data Management Framework
Download, Edit and Include Wind Data in Ecological and
Evolutionary Analysis
R Interface to 'WinEdt'
Running Winsteps in R
Random Wishart Matrix Generation
Mapping Global Data
Country boundaries at high resolution
Rice Wavelet Toolbox wrapper
R We There Yet? Visualizing MCMC Convergence in Phylogenetics
R Interface to Weather Underground API
R x C Ecological Inference With Optional Incorporation of Survey
Information
Get XKCD Comic from R
Functions to Parse and Create XMCDA Files
Functions to Compute Chemical Reaction Similarity
Facilities for Simulating from ODE-Based Models
Combined Total and Allele Specific Reads Sequencing Study
Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression
Import XY-Data into R
R Interface to the Yacas Computer Algebra System
R Interface to Yandex Translate API
R package provide functions to translate English words into
Chinese
Companion to the Forthcoming Book - R you Ready?
Access to the YouTheria Mammal Trait Database
Grain size analysis, textural classifications and distribution
of unconsolidated sediments
GUI Tool for Data Management like SPSS or Stata
R Module for Working with the 'Zabbix API'
Zig-Zag Sampler
R Bindings for 'ZeroMQ'
Google's S2 Library for Geometry on the Sphere
Functions for University of Auckland Course STATS 201/208 Data
Analysis
Set of Common Tools for Forecast Verification
Spatial Two Stage Least Squares Estimation
Biclustering via Sparse Singular Value Decomposition
Incorporating Stability Selection
Somatic Copy Number Alteration Analysis Using Sequencing and SNP
Array Data
Semiparametric Analysis of Changepoint
Detection of Fixations in Eye-Tracking Data
SA Counterparty Credit Risk under Basel III
Self-Adjusting COBRA
Stability Analysis in Differentially Expressed Genes
Species Abundance Distributions with Independent-Species
Assumption
Some Additional Distributions
Maximum Likelihood Models for Species Abundance Distributions
Small Area Estimation
Small Area Estimation: Time-series Models
Stochastic Approximation Expectation Maximization (SAEM)
Algorithm
A Stacked Autoencoder Implementation with Interface to
'neuralnet'
Robust Small Area Estimation
Small Area Estimation for Rao and Yu Model
Simulation Tools for Small Area Estimation
Statistical Analysis of Fuzzy Data
Generalized and Safe-Bayesian Ridge and Lasso Regression
Safe Binary Regression
A Toolbox for the Analysis of Proteomics Data
Encrypt and Decrypt Strings, R Objects and Files
Sensitivity Analysis for Functional Input
Software for the Analysis of Genetic Architecture
Akaike Information Criterion for Sparse Estimation
Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric
Least Squares (SALES) and Coupled Sparse Asymmetric Least
Squares (COSALES) using Coordinate Descent and Proximal
Gradient Algorithms
Efficient Sampling on the Simplex
Sparse Additive Modelling
Some Algorithms for Mixed Models
Sensitivity Analysis for Missing Data
Sample size calculation
A Framework for Comparing the Performance of MCMC Samplers
Sample Selection Models
Sample Size Calculation for Various t-Tests and Wilcoxon-Test
Sample Size Calculation for Mean and Proportion Comparisons in
Phase 3 Clinical Trials
Sample Size Calculations for Complex Surveys
Power and Sample Size Calculation for the
Cochran-Mantel-Haenszel Test
Sample Size Calculations for Case-Control Studies
Sample size calculations for normal means
Calculating sample size requirements when estimating the
difference between two binomial proportions
Survey Sampling
Survey Sampling Procedures
Sampling Data Within Different Study Designs for Cluster
Randomized Trials
Sampling Estimates
Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Sampling Variance Estimation
Sampling Surface Simulation for Areal Sampling Methods
SAM: Significance Analysis of Microarrays
Stochastic Augmentation of Matched Data Using Restriction
Methods
Sensitivity Analysis of a Meta-analysis with Unpublished but
Registered Analytical Investigations
Statistical Analysis of Network Data with R
Robust Covariance Matrix Estimators
Downloads and Tidies the San Francisco Public Utilities
Commission Beach Water Quality Monitoring Program Data
C/C++ source code to trigger Address and Undefined Behaviour
Sanitizers
Illustrate the Flow of Information or Material
Stratified Analysis with Nonparametric Covariable Adjustment
Spectral Analysis for Physical Applications
Statistical Analysis of Point Processes
Simulation and Prediction with Seasonal ARIMA Models
Network-based Interpretation of Changes in Compositional Data
XML Output Functions for Easy Creation of Moodle Questions
SAS Database Reader (experimental)
Import ASCII files directly into R using only a SAS input script
Static 'SAS' Code Analysis
'SAS' Markdown
Data sets from "SAS System for Mixed Models"
Significant AnalysiS of PEptide CounTs
Read and Write 'SAS' 'XPORT' Files
Handling and Manipulating Remote Sensing Data
'SaTScan' (TM) Results Mapper
Spanning Trees Used for Network Inference
Bayesian Emulation, Calibration and Validation of Computer
Models
Fast load variables
Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Sequential BART for Imputation of Missing Covariates
Smooth Backfitting
Selective Bayesian Forest Classifier
Semiparametric Bayesian Gaussian copula estimation and
imputation
Computing the Singular BIC for Multiple Models
sbioPN: Simulation of deterministic and stochastic spatial
biochemical reaction networks using Petri Nets
Semidefinite Programming for Fitting Block Models of Equal Block
Sizes
Detecting structural breaks using rectangle covering
(non-parametric method)
Scalable Bayesian Rule Lists Model
Simplified Bayesian Sensitivity Analysis
USGS ScienceBase Tools
Simple Component Analysis
Compute scagnostics - scatterplot diagnostics
Likert Type Questionnaire Item Analysis
Approximately Unbiased P-Values via Multiscale Bootstrap
Scale Functions for Visualization
Processes Calcium Imaging Data
Scaled sparse linear regression
Shape Constrained Additive Models
Single-Case Data Analyses for Single and Multiple AB Designs
Space-Time Anomaly Detection using Scan Statistics
Statistical Catch-at-Age Plotting Environment
Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
Summary based Conditional Association Test
Create Scatter Plots with Marginal Density or Box Plots
D3 JavaScript Scatterplot from R
Scatter Pie Plot
3D Scatter Plot
Simultaneous Confidence Bands for the Mean of Functional Data
Size-Constrained Clustering
Estimating Hierarchical Linear Models for Single-Case Designs
Construct Reduced Trees with Predefined Nodal Structures
Stellar CharactEristics Pisa Estimation gRid
Stellar CharactEristics Pisa Estimation gRid for Binary Systems
Supervised Component Generalized Linear Regression
Automated Schema on Read
Analyse Citation Data from Google Scholar
Functions and datasets for math used in school
Tools for Analyzing Factorial Experiments
Schumaker Shape-Preserving Spline
A package on the Schwartz two-factor commodity model
Standardized Climate Indices Such as SPI, SRI or SPEI
An R Interface to SciDB
A Tool Set for Analyzing Political Behavior Data
Text & Scientometric Analytics
Visualize Reproducibility and Replicability in a Comparison of
Scientific Studies
Sparse Column-wise Inverse Operator
Scientific Graphing Functions for Factorial Designs
SciViews - Main package
Measure Growth Patterns and Align Sampling Spots in Photographs
Single-Case Meta-Analysis
Statistical Comparison of Multiple Algorithms in Multiple
Problems
A Package to Score Behavioral Questionnaires
Credit Risk Scorecard
Score Persons Using the Generalized Graded Unfolding Model
Quickly Score Models in Data Science and Machine Learning
SCORER 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences
Proper scoring rules
Scoring Rules for Parametric and Simulated Distribution
Forecasts
Inferring Developmental Chronologies from Single-Cell RNA
Sequencing Data
The ScottKnott Clustering Algorithm
The Scott-Knott Effect Size Difference (ESD) Test
Implements the Scout Method for Covariance-Regularized
Regression
Supply Chain Perform
An R Package for Spatial Smoothing
Calculates Scrabble score for strings
Scrape European Parliament Careers
Tools for Scraping Data from HTML and XML Documents
Screen and clean variable selection procedures
Analysis of High-Dimensional Categorical Data such as SNP Data
Transcript-Based Unit Tests that are Easy to Create and Maintain
Execute Native Scripts
Simulating the Evolution of Biological Sequences
Performs Bayesian Variable Selection on the Covariates in a
Semi-Competing Risks Model
Single-Case Randomization Tests
Clean Biological Occurrence Records
scrypt key derivation functions for R
Splitting Conic Solver
Diving Calculations and Decompression Models
Single-Case Visual Analysis
Shrinkage Discriminant Analysis and CAT Score Variable Selection
Sampling: Design and Analysis
Signal Detection via Adaptive Test
Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Methods for Statistical Disclosure Control in Tabular Data
Statistical Disclosure Control Substitution Matrix Calculator
Serial Dependence Diagrams
Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome
Similarity Networks
Semidiscrete Decomposition
Simulation and Inference for Stochastic Differential Equations
Synthesizing List of Differentially Expressed Features
Subgroup Discovery with Evolutionary Fuzzy Systems in R
Species Distribution Modelling
Species Distribution Modelling Playground
Species Distribution Modelling Predictor Datasets
Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Create Virtual Species for Species Distribution Modelling
Soft-Discretization-Based Bayesian Network Inference
Summarizing Distributions of Latent Structures
Scale-Dependent Hyperpriors in Structured Additive
Distributional Regression
Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Semi-Definite Quadratic Linear Programming Solver
Spatially Balanced Sample Draws for Spatial Objects
Scenario Discovery Tools to Support Robust Decision Making
Sparse Distance Weighted Discrimination
Sea Around Us API Wrapper
Seawater Carbonate Chemistry
Standard Error Adjusted Adaptive Lasso
Tools for Custom Searches / Subsets / Slices of Named R Objects
Google Search Console R Client
Spatial Search Trees
Seasonal analysis and graphics, especially for climatology
Score Equity Assessment- summary index computation
Seasonal analysis of health data
R Interface to X-13-ARIMA-SEATS
Graphical User Interface for Seasonal Adjustment
U.S. Geological Survey seawaveQ model
SEchart
The SecKW Distribution
Statistical Estimation of Cluster Parameters (SECP)
Spatially Explicit Capture-Recapture
Sampling Design for Spatially Explicit Capture-Recapture
Share Sensitive Information in R Packages
Spatially Explicit Capture-Recapture for Linear Habitats
Sequential Co-Sparse Factor Regression
Identify and Parse Web Security Policies Files
Access Data from the SeeClickFix Web API
Seeded Canonical Correlation Analysis
Simulation of Evolutionary and Epidemiological Dynamics
reading and writing SEER*STAT data files
SEER and Atomic Bomb Survivor Data Analysis Tools
A Quick Way to Map U.S. Rates and Data of U. S. States,
Counties, Census Tracts, or Seer Registries using 2000 and 2010
U. S. Census Boundaries
Supplemental U. S. 2010 Census Tract Boundaries for 23 Eastern
States without Registries for 'SeerMapper'
Supplemental U. S. 2010 Census Tract Boundaries for 15 States
with Seer Registries for 'SeerMapper'
Supplemental U.S. 2010 Census Tract Boundaries for 14 Western
States without Seer Registries for 'SeerMapper'
Supplemental U. S. 2000 Census Tract Boundaries for 23 Eastern
States without Seer Registries
Supplemental U. S. 2000 Census Tract Boundary for 15 States with
Seer Registries for 'SeerMapper'
Supplemental U.S. 2000 Census Tract Boundaries for 14 Western
States without Seer Registries for 'SeerMapper'
Sound Analysis and Synthesis
A set of tools for measuring spatial segregation
Detecting Correlated Genomic Regions
Determine Event Boundaries in Event Segmentation Experiments
Regression Models with Break-Points / Change-Points Estimation
A Fast Segmentation Algorithm
Predict Information Cascade by Self-Exciting Point Process
Fast Rolling Functions for Seismology using Rcpp
An Information About Deputies and Votings in Polish Diet from
Seventh to Eighth Term of Office
KoNLP static dictionaries and Sejong project resources
Semiparametric elicitation
Determines Species Probabilities Based on Functional Traits
Analysis of Field and Laboratory Foraging
Correcting Biased Estimates Under Selection
A Tool for Calculation and Optimization of the Expected Gain
from Multi-Stage Selection
Tools for Post-Selection Inference
Estimation of Weight Functions in Meta Analysis
Translate CSS Selectors to XPath Expressions
Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
Selective Editing via Mixture Models
R Client Implementing the W3C WebDriver Specification
A Structural Equation Embedded Likelihood Framework for Causal
Discovery
Select Features Reliably with Cohen's Effect Sizes
Genotype Probabilities in Intermediate Generations of Inbreeding
Through Selfing
Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis
Structural Equation Models
Structural equation modeling diagnostics
Structural Equation Multidimensional Scaling
Goodness-of-fit indexes for structural equation models
Generator of Semi-Artificial Data
Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Identifiability of Linear Structural Equation Models
Multi-States Semi-Markov Models
Domain-Specific Language for Building PLS Structural Equation
Models
Semiparametic Regression
Semi-Parametric Sample Selection Modelling with Continuous or
Discrete Response
Kernel PCA projection, and semi-supervised variant
Model Comparisons for SEM
Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Structural Equation Modeling Using Partial Least Squares
Semiparametric Estimation of Stochastic Frontier Models
Useful Tools for Structural Equation Modeling
Recursive Partitioning for Structural Equation Models
'Semantic Versioning V2.0.0' Parser
send email using R
Tool for sending interactive plots with tool-tip content
Sensitivity Analysis for Comparative Methods
Global Sensitivity Analysis of Model Outputs
Sensitivity Analysis for 2x2xk Tables in Observational Studies
Sensitivity Analysis for Case-Control Studies
Sensitivity Analysis for Full Matching in Observational Studies
Sensitivity Analysis for Observational Studies with Multiple
Outcomes
Sensitivity Analysis in Observational Studies
Sensitivity analysis using weighted M-statistics
Principal Stratification Sensitivity Analysis Functions
Sensory and Consumer Data Mapping
Analysis of Sensory and Consumer Data in a Mixed Model Framework
Sensory Data Analysis
Test and Optimise Sampling Designs Based on Plume Simulations
Simultaneous Model-Based Clustering and Imputation via a
Progressive Expectation-Maximization Algorithm
Thurstonian Models for Sensory Discrimination
Datasets from Sen & Srivastava
Sensitivity Analysis for Stratified Observational Studies
Sensus Analytics
Dictionary-Based Sentiment Analysis
Calculate Text Polarity Sentiment
An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Maximum Likelihood Estimation and Likelihood Ratio Test
Functions for Separable Variance-Covariance Structures
Separation Plots
Improved Standard Evaluation Interfaces for Common Data
Manipulation Tasks
Sequential Allocation for Prospective Experiments
CN Profiling using Sequencing and CBS
Simulation and Group Sequential Monitoring of Randomized
Two-Stage Treatment Efficacy Trials with Time-to-Event
Endpoints
A Tool to Associate FASTA Sequences and Features
Simple GUI for Graph Based Visualization of Cluster of DNA
Sequence Reads
Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Sequential Invariant Causal Prediction
Biological Sequences Retrieval and Analysis
Network Module-Based Model in the Differential Expression
Analysis for RNA-Seq
Meta-Analysis of Region-Based Tests of Rare DNA Variants
Efficiently Read Sequence Data (VCF Format, BCF Format and METAL
Format) into R
Group Sequential Design Class for Clinical Trials
Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences
Sequential Triangular Test
Sequence Analysis
Generic and Biological Sequences
Exact Sequential Analysis for Poisson and Binomial Data
Observational Database Study Planning using Exact Sequential
Analysis for Poisson and Binomial Data
Copy Number Estimation from Tumor Genome Sequencing Data
Pedigree Inference from SNPs
Tools to Transform and Query Data with 'Apache' 'Drill'
The Serial Interface Package
Infrastructure for Ordering Objects Using Seriation
Estimating Infection Rates from Serological Data
A Simple HTTP Server to Serve Static Files or Dynamic Documents
Spatially Explicit Structural Equation Modeling
Functions for interacting with, saving and restoring R sessions
R Session Information
Functions for Set-Theoretic Multi-Method Research and Advanced
QCA
Spiked Eigenvalue Test for Pathway data
Advanced Gene Set Enrichment Analysis
Set (Normal) Random Number Generator and Seed
Sets, Generalized Sets, Customizable Sets and Intervals
Mutators that Work with Pipes
Group Testing Procedures for Signal Detection and
Goodness-of-Fit
Software Option Settings Manager for R
Tools for Single Cell Genomics
Mayo's Post-data Severity Evaluation
Calculates the historic date of extinction given a series of
sighting events
Simple Features for R
Stochastic Frontier Analysis
Advanced Methods for Stochastic Frontier Analysis
Substance Flow Computation
Constrained Triangulation for Simple Features
Sequential Full Factorial-Based Latin Hypercube Design
Straightforward Filtering Index for AP-MS Data Analysis (SFINX)
Similarity-First Search Seriation Algorithm
Utilities from 'Seminar fuer Statistik' ETH Zurich
Functions for Systems Factorial Technology Analysis of Data
Space Filling Based Tools for Data Mining
Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Stochastic Gradient Descent for Scalable Estimation
Stagewise Generalized Estimating Equations
An Object-Oriented Framework for Geostatistical Modeling in S+
Fit a GLM (or cox model) with a combination of lasso and group
lasso regularization
Lasso Method for RCON(V,E) Models
Fitting Semi-Parametric Generalized log-Gamma Regression Models
Generic Sparse Group Lasso Solver
An R package for power and boundary calculations in
pre-licensure vaccine trials using a sequential generalized
likelihood ratio test
Stochastic Gradient Markov Chain Monte Carlo
Multiple Hypothesis Testing
Student Growth Percentiles & Percentile Growth Trajectories
Sparse Generalized Principal Component Analysis
Exemplar Data Sets for SGP Analyses
Sparse Group Partial Least Square Methods
Sample Generation by Replacement
Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data
Skewed Generalized T Distribution Tree
Simple Colour Manipulation
Geometric Shadow Calculations
Shadow Text Grob and Layer
Random Partition Distribution Indexed by Pairwise Information
Functions for Plotting Graphical Shapes, Colors
Change-Point Estimation using Shape-Restricted Splines
Read and Write ESRI Shapefiles
Tools for Analyzing Planar Shape and Associated Patterns
Collection and Analysis of Otolith Shape Data
Statistical Shape Analysis
Shape Selection for Landsat Time Series of Forest Dynamics
Statistical Significance of the Sharpe Ratio
Moment-Free Estimation of Sharpe Ratios
Estimating Regulatory Scores and Identifying HiDRA Data
A Soil Survey Toolkit
Models and Data Sets for the Study of Species-Area Relationships
Immunoglobulin Somatic Hypermutation Analysis
Tools to Support the Sheffield Elicitation Framework
Bivalve Growth and Trace Element Accumulation Model
Fast Enrichment Analysis via Circular Permutations
Web Application Framework for R
Semantic UI Support for Shiny
Ace Editor Bindings for Shiny
'WebVR' Data Visualizations with 'RStudio Shiny' and 'Mozilla
A-Frame'
Bootstrap 2 Web Components for Use with Shiny
Twitter Bootstrap Components for Shiny
Add CSS Loading Animations to 'shiny' Outputs
Create Dashboards with 'Shiny'
Shiny Drag-n-Drop
Displays User Feedback Next to Shiny Inputs
A Server-Side File System Viewer for Shiny
Deploy 'heatmaply' using 'shiny'
Image Manipulation, with an Emphasis on Journaling
Test and Item Analysis via Shiny
'jQuery UI' Interactions and Effects for Shiny
Easily Improve the User Experience of Your Shiny Apps in Seconds
An Interactive Application for ODE Parameter Inference Using
Gradient Matching
Bootstrap Landing Home Pages for Shiny Applications
Implement Material Design in Shiny Applications
Shiny Wrappers for RGL
Creates an Executable Shortcut for Shiny Applications
Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Functions to Minimize Bonehead Moves While Working with 'shiny'
Themes for Shiny
A Time Input Widget for Shiny
Notifications from 'Shiny'
jsTree Bindings for Shiny
Custom Inputs Widgets for Shiny
SHrinkage covariance Incorporating Prior knowledge
Slope Heuristic for Block-Diagonal Covariance Selection in High
Dimensional Gaussian Graphical Models
An R Interface to the Shopify API
Automatic Short Form Creation
Analyze Shot Group Data
Using Fonts More Easily in R Graphs
Font Files for the 'showtext' Package
Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Global, Parameterwise and Joint Shrinkage Factor Estimation
Shrinkage Covariance Matrix Estimators
The Shuffle Estimator for Explainable Variance
Stable Isotope Analysis in R
Stable Isotope Bayesian Ellipses in R
Systematic Identification of Bimodally Expressed Genes Using
RNAseq Data
Analysis of Single-Cell Viral Growth Curves
Structural Intervention Distance
Side Channel Attack
Subgroup Identification Based on Differential Effect Search
Substitution and Indel Distances to Infer Evolutionary
Relationships
An Interface to IBGE's SIDRA API
Signal Extraction Approach for Sparse Multivariate Response
Regression
Sieve test reporting functions
Print Function Signatures
Statistical Significance of Clustering
Wildlife Sightability Modeling
Signal Location Estimation
Sigmoid Functions for Machine Learning
Signal Processing
Predict Presence of Signal Peptides
Significant Variable Selection in Linear Regression
Perform Exact Sign Test and Asymptotic Sign Test in Large
Samples
R API Wrapper for SigOpt
Signature Overrepresentation Analysis
Quality Control Metrics for Gene Signatures
Succinct and Correct Statistical Summaries for Reports
Identify and Visualize Significantly Responsive Branches in a
Phylogenetic Tree
Calculate ANSI S3.5-1997 Speech Intelligibility Index
Spatial Influence of Landscape
Statistical Inference of Large-Scale Gaussian Graphical Model in
Gene Networks
Simulation of Diffusion Processes
Simulation of Piecewise Linear Fuzzy Numbers
Genotype Simulations for Rare or Common Variants Using
Haplotypes from 1000 Genomes
A Collection of functions for similarity analysis of vegetation
data
Simultaneous Inference for Diversity Indices
Simulating Longitudinal Data with Causal Inference Applications
Simultaneous Comparisons for Multiple Endpoints
Simulate from Arbitrary Copulae
Simulates Correlated Multinomial Responses
Safe Implementation of Monte Carlo Tests
Structure for Organizing Monte Carlo Simulation Designs
Simulation of Ecological (and Other) Dynamic Systems
Simulation Education
Constrained Single Index Model Estimation
SIMEX- And MCSIMEX-Algorithm for Measurement Error Models
simexaft
Simulation framework
Simulate Models Based on the Generalized Linear Model
Simulated Survival and Hazard Analysis for Time-Dependent
Exposure
Trajectory Similarity Measures
Interact with Simile Models
A Framework for Data-Driven Stochastic Disease Spread
Simulations
Simulation of Fatigue Lifetimes
Discrete-Event Simulation for R
Plotting Methods for 'simmer'
Simulate Somatic Mutations in Cancer Genomes from Mutational
Processes
A Stable Isotope Mixing Model
Subnetwork Integration for Multi-Modal Signatures
Simulation of Event Histories for Multi-State Models
Simulation of Correlated Data with Multiple Variable Types
A Method for Simulating Data from Perturbed Biological Pathways
Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Tools to Simulate Phenotype(s) with Epistatic Interaction
Simple Bootstrap Routines
Simply Caching R Objects
Simple Graph Data Types and Basic Algorithms
An Easy to Use Multilayer Perceptron
Simple R Cache
Set Up R Source Code Files for Use on Multiple Machines
Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding
Regression Analysis of Proportional Data Using Simplex
Distribution
Integration of Functions Over Simplices
Basic Symbolic Expression Simplification
Simulation of Synthetic Populations for Survey Data Considering
Auxiliary Information
Detecting Simpson's Paradox
Simple Imputation
Power Analysis for Generalised Linear Mixed Models by Simulation
Simulations to Predict the Number of RAD and GBS Loci
Similarity Regression
Linear Model Data Simulation and Design of Computer Experiments
Simulating Multistate Movements in River/Heterogeneous
Landscapes
Simulate Pedigrees Ascertained for a Rare Disease
Tools for Simulation Studies in Parallel
'Simulates Univariate and Semi-Competing Risks Data Given
Covariates and Piecewise Exponential Baseline Hazards'
SIMulated Structural Equation Modeling
Nonparametric Simulation of RNA-Seq Data
Simulation of Study Data
Simulation summary
Simulate Survival Data
Datetimes as Integers for Discrete-Event Simulations
Simulate Longitudinal Dataset with Time-Varying Correlated
Covariates
Conduct Simulation Studies with a Minimal Amount of Source Code
Simulation process of 4 selection methods in predicting chemical
potent compounds
An Engine for Running Simulations
A Constrained L1 Minimization Approach for Estimating Multiple
Sparse Gaussian or Nonparanormal Graphical Models
Correspondence and Simultaneous Analysis
A SINful Approach to Selection of Gaussian Graphical Markov
Models
An Enhanced Chart for Simple and Truthful Representation of
Single Observations over Multiple Classes
Create 'roxygen2' Skeleton with Information from Function Script
Sum of Independent Non-Identical Binomial Random Variables
The SinIW Distribution
Spatial Individual-Plant Modelling
Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Single-Index Response Surface Models
Supplementary Item Response Theory Models
Sure Independence Screening
Sequential Input Selection Algorithm
Sparse Interval Sliced Inverse Regression
SISUS: Stable Isotope Sourcing using Sampling
Some Invalid Some Valid Instrumental Variables Estimator
Super Imposition by Translation and Rotation Growth Curve
Analysis
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header
Files
Format a number to a string with SI prefix
Single Tree Simulator
Sitree Extensions
Sensitivity Indices with Dependent Inputs
Six Sigma Tools for Quality Control and Improvement
Estimating the Sizes of Populations at Risk of HIV Infection
from Multiple Data Sources Using a Bayesian Hierarchical Model
Estimate Size at Sexual Maturity
SiZer: Significant Zero Crossings
JDBC Driver Interface
Labelled Data Utility Functions
Data and Variable Transformation Functions
Data Visualization for Statistics in Social Science
Collection of Convenient Functions for Common Statistical
Computations
SNP-Set (Sequence) Kernel Association Test
Sparse (Multicategory) Kernel Discriminant Analysis
Genetic Simulation Engine
An R Package Skeleton Generator
Densities and Sampling for the Skellam Distribution
The Skew Hyperbolic Student t-Distribution
The Skewed Student-t Distribution
The Skillings-Mack Test Statistic for Block Designs with Missing
Observations
Compact and Flexible Summaries of Data
Selective k-Means
Spherical k-Means Clustering
Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Canopy Openness Analyzer Package
Skyscape Archaeology Data Reduction, Visualization and Analysis
Search and Download Satellite Imagery using the SkyWatch API
Two-Group Straight Line ANCOVA
Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Sparse Lightweight Arrays and Matrices
Slope and level change
Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Software for Analyzing Limiting Dilution Assays
4253H, Twice Smoothing
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd
Ed)"
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd
Ed)"
Tools for Fitting Sparse Latent Factor Model
Maximin-Distance (Sliced) Latin Hypercube Designs
Selective Locally Linear Inference of Cellular Expression
Relationships
Create Interactive Carousels with the JavaScript 'Slick' Library
Singular Linear Models for Longitudinal Data
Sparse Linear Method to Predict Ratings and Top-N
Recommendations
Sorted L1 Penalized Estimation (SLOPE)
A Slow Version of the Rapid Automatic Keyword Extraction (RAKE)
Algorithm
Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Smoothing methods for nonparametric regression and density
estimation
Stochastic Multi-Criteria Acceptability Analysis
Sparse Multi-category Angle-Based Large-Margin Classifiers
Multidimensional Scaling
Statistical Methods for the Analysis of Case-Control Point Data
Fits a Fay Herriot Model
Statistical Modeling of Animal Movements
Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Sparse Multivariate Analysis via Rank Transformation
Tools for Accessing Various Datasets Developed by the Foundation
SmarterPoland.pl
Online Unsupervised Outlier Detection Using Finite Mixtures with
Discounting Learning Algorithms
Fast and Robust Surrogate Variable Analysis
(Standardised) Major Axis Estimation and Testing Routines
Scoring Modeling and Optimal Binning
Sequential Monte Carlo (SMC) Algorithm
Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
A simple Monte Carlo optimizer using adaptive coordinate
sampling
Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies
Data Sets for Statistical Methods in Customer Relationship
Management by Kumar and Petersen (2012)
Fit Semiparametric Mixture Cure Models
Utility functions for sequential Monte Carlo
Data to accompany Smithson & Merkle, 2013
Document Similarity
Symbolic Multidimensional Scaling
Smoothing-splines Mixed-effects Models
Statistical Methods for Regional Counts
R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
SMfSB 2e: Stochastic Modelling for Systems Biology, second
edition
Companion to Statistical Modelling in R
Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book
Sego Miscellaneous
Smith-Wilson Yield Curve Construction
Outlier Detection Using Statistical and Machine Learning Methods
Simulation and Estimation of Multi-State Discrete-Time
Semi-Markov and Markov Models
Soft Maximin Estimation for Large Scale Array-Tensor Models
Fitting Univariate Censored Regression Model Under the Family of
Scale Mixture of Normal Distributions
Smoothing for Stream Network Data
Single and Multi-Objective Optimization Test Functions
Forecasting Using Smoothing Functions
Smoothing of Two-Dimensional Demographic Data, Optionally Taking
into Account Period and Cohort Effects
Functions Relating to the Smoothing of Numerical Data
Estimation of Smooth Hazard Models for Interval-Censored Data
with Applications to Survival and Illness-Death Models
Smooth Hazard Ratio Curves Taking a Reference Value
Two-dimensional Field Smoothing
Smoothed M-estimators for 1-dimensional location
Survival Regression with Smoothed Error Distribution
Smooth Estimation of GPD Shape Parameter
Soft Windowing on Linear Regression
A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Creates Images Sized for Social Media
Practicals for use with Davison (2003) Statistical Models
Externally Studentized Midrange Distribution
Spatial Microsimulation
Datasets for Agresti and Finlay's "Statistical Methods for the
Social Sciences"
Structural Model for variances
The Skew-Normal and Related Distributions Such as the Skew-t
Tools for Social Network Analysis
Convert Strings into any Case
R and Python Integration
Gadget N-body cosmological simulation code snapshot I/O
utilities
Similarity Network Fusion
Standard Normal Homogeneity Test
Snipping methods for robust estimation and clustering
Stabilized Nearest Neighbor Classifier
Sparse Neural Networks for Genomic Selection in Animal Breeding
Simple Network of Workstations
Snowball stemmers based on the C libstemmer UTF-8 library
Bootstrap Methods for Network Inference
Easier cluster computing (based on snow)
Random Snowflake Generator
Fault Tolerant Simple Network of Workstations
snp.plotter
Supplementary Non-parametric Statistics Methods
SNPs-based whole genome association studies
SNPs Enrichment Analysis
Knockoffs for Hidden Markov Models and Genomic Data
Tools to Create Gene Sets
NPLS Regression with L1 Penalization
Maximally selected statistics for SNP data
Bivariate Gaussian Genotype Clustering and Calling for Illumina
Microarrays
Preparing Genotypic Datasets in Order to Run Genomic Analysis
Random Forest for SNPs to Prevent X-chromosome SNP Importance
Bias
Flexible writing of snpStats objects to flat files
Accessing, subsetting and plotting mouse SNPs
Stochastic Newton Sampler (SNS)
Scan Statistics in Social Networks
Standard and Nonstandard Statistical Models and Methods for Test
Equating
Memory management in R by delayed assignments
Sobol Sequences with Better Two-Dimensional Projections
Specific Correspondence Analysis for the Social Sciences
Social Autocorrelation
Tools for Collecting Social Media Data and Generating Networks
for Analysis
A Social Media Search and Analytic Tool
Social Mixing Matrices for Infectious Disease Modelling
Generates social networks based on distance
Social Position Indicators Construction Toolbox
SOD for multidimensional scaling
Functions and Examples for "Software for Data Analysis"
SODA: Main and Interaction Effects Selection for Logistic
Regression, Quadratic Discriminant and General Index Models
Optimal Discriminant Clustering(ODC) and Sparse Optimal
Discriminant Clustering(SODC)
A Modern and Easy-to-Use Crypto Library
Connector to 'CouchDB'
Interfaz interactiva con fines didacticos
Making Sophisticated and Aesthetical Figures in R
Soft Classification Performance Measures
Soft Clustering Algorithms
Read Exported Data from 'SoftMax Pro'
Matrix Completion via Iterative Soft-Thresholded SVD
Training Multi-Layer Neural Network for Softmax Regression and
Classification
Sparsity Oriented Importance Learning
Soil Spectroscopy Tools and Reference Models
Tools to Analyze Soil Carbon Database Created by Powell Center
Working Group
Soil Database Interface
Soil Physical Analysis
A package to consistently represent soil properties along a soil
profile
Models of Soil Organic Matter Decomposition
Functions for Soil Texture Plot, Classification and
Transformation
Implementation of Parametric Formulas for Soil Water Retention
or Conductivity Curve
Radiation and Photovoltaic Systems
An R Interface to SOLAR
Solar Position Algorithm for Solar Radiation Applications
Solid Earth Tide Computation
Parentage analysis
General Purpose R Interface to Solr
General Purpose R Interface to 'Solr'
The Official SolveBio API Client
Self-Organizing Map
Topological k-NN Classifier Based on Self-Organising Maps
General-Purpose Optimisation With the Self-Organising Migrating
Algorithm
SOM Bound to Realize Euclidean and Relational Outputs
some Brownian motions simulation functions
Controlling the Generalized Familywise Error Rate
Some Multiple Testing Procedures
Solving Mixed Model Equations in R
Visualisation of hexagonal Kohonen maps
Fundamental Formulas for Sonar
Estimating Abundance of Clones from DNA fragmentation data
Data Sonification - Turning Data into Sound
Single Objective Optimization Benchmark Functions
Load Russian Economic Indicators from the Archive of Economic
and Social Data
Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar
Sequential Optimal Designs for Two-Colour cDNA Microarray
Experiments
Helps Make Socrata Open Data API Calls
Estimation using Sequential Offsetted Regression
Static Adsorption Experiment Plotting and Analysis
Turns a data frame into an HTML file containing a sortable
table
sortinghat
Finnish Open Government Data Toolkit
Search Contributed R Packages, Sort by Package
An R client for the OGC Sensor Observation Service
Sotkanet Open Data Access and Analysis
United States Presidential State of the Union Addresses
A Sound Interface for R
Soundscape Ecology
Phonetic-Coding for Portuguese
Parametric Voice Synthesis
Stochastic Ordering Using Permutations (and Pairwise
Comparisons)
Read R code from a GitHub Gist
Fits a Non-Parametric Bayesian Source Attribution Model
Tools for Reading, Tokenizing and Parsing R Code
Soybean Nested Association Mapping Dataset
Classes and Methods for Spatial Data
Design and Simulation of seamless Phase II-III Clinical Trials
Implements The Sequential Predictions Algorithm
SPA3G: R package for the method of Li and Cui (2012)
SPecies Association Analysis
Spatial Convex Clustering
Sparse PArtial Correlation Estimation
A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models
Extension of SPACE
Sparse conditional graph estimation with joint additive models
Classes and Methods for Spatio-Temporal Data
Spatial and Phylogenetic Analysis of Community Diversity
Spatially Weighted Context Data for Multilevel Modelling
R Wrapper to the spaCy NLP Library
Spherical Projections of Astronomical Data
A Set of RStudio Addins
Species-Richness Prediction and Diversity Estimation with R
Develop and Run Spatially Explicit Discrete Event Simulation
Models
Development Tools for 'SpaDES' and 'SpaDES' Modules
Core Utilities for Developing and Running Spatially Explicit
Discrete Event Simulation Models
Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Software for Project AERO
SPArse Matrix
64-Bit Extension of the SPArse Matrix R Package 'spam'
Mixed-Effect Models, Particularly Spatial Models
Spatial Panel Data Models
Translate Quantities from Strings Spelled in Spanish to Integer
MR Spectroscopy Analysis Tools
Perform rare variants association analysis based on summation of
partition approaches
Semiparametric Generalized Linear Models
Perform sparse hierarchical clustering and sparse k-means
clustering
Client Side Load Balancing
'Sparklines' in the 'R' Terminal
Read in 'SAS' Data ('.sas7bdat' Files) into 'Apache Spark'
Load Avro File into 'Apache Spark'
'jQuery' Sparkline 'htmlwidget'
R Interface to Apache Spark
Sparklines and Graphical Tables for TeX and HTML
Generate LaTeX sparklines in R
Load WARC Files into Apache Spark
SPARQL client
Spatial and Spatiotemporal Relative Risk
Sparse Biclustering of Transposable Data
Learning Sparse Bayesian Networks from High-Dimensional Data
Utilities for Learning Sparse Bayesian Networks
Implementation of SparseDC Algorithm
Sparse and Regularized Discriminant Analysis
Computation of Sparse Eigenvectors of a Matrix
Scaling Count and Binary Data with Sparse Factor Analysis
Functional Linear Mixed Models for Irregularly or Sparsely
Sampled Data
Sparse grid integration in R
Numerical Estimation of Sparse Hessians
Sparse Discriminant Analysis
Sparse Learning Algorithms Using a LASSO-Type Penalty for
Coefficient Estimation and Model Prediction
RcppEigen back end for sparse least trimmed squares regression
Sparse Linear Algebra
Multivariate Normal Functions for Sparse Covariance and
Precision Matrices
Fit sparse linear regression models via nonconvex optimization
'Rcpp' Interface to 'sparsepp'
Sparse Bayesian Models for Regression, Subgroup Analysis, and
Panel Data
Sparse-aware Maximum Likelihood for Structural Equation Models
SparseStep Regression
Sparse Truncated Singular Value Decomposition (from 'SVDLIBC')
Solution Paths of Sparse Linear Support Vector Machine with
Lasso or ELastic-Net Regularization
Sparse Time Series Chain Graphical Models
A Package for Sparse VAR/VECM Estimation
I/O Operations with Sparse Matrices
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan
Study Planning and Adaptation of Sample Size
Spatial count regression
Spatio-Temporal Modeling of Large Data Using a Spectral SPDE
Approach
Score Test Based on Saddlepoint Approximation
Graph Edge Computations for Spatial Point Patterns
Functions for Kriging and Point Pattern Analysis
Hierarchical spatial generalized extreme value (GEV) modeling
with Bayesian Model Averaging (BMA)
R functions for working with spatial data
Spatial Accessibility Measures
Spatial NBA Visualization and Analysis
Spatial Clustering using Fuzzy Geographically Weighted
Clustering
Computation of Spatial Covariance Matrices for Data on
Rectangles
Spatial Analysis and Modelling
Methods and Data for Spatial Epidemiology
A Shiny Web Application for the Analysis of Spatial and
Spatio-Temporal Disease Data
Modelling Spatial Extremes
Application of 2D Convolution Kernel Filters to Matrices or 3D
Arrays
Spatial Floor Simulation (Isotropic)
Non-Parametric Estimation of Spatial Segregation in a
Multivariate Point Process
Performs spatial NBDA in a Bayesian context
Multivariate Nonparametric Methods Based on Spatial Signs and
Ranks
Package for analysis of spatial data
Spatial Position Models
Spatial Probit Models
Segregation Measures for Multitype Spatial Point Patterns
Estimation of spatial tail dependence models
Tools for Spatial Data Analysis
Spatial Forecast Verification
Spatial Early Warning Signals of Ecosystem Degradation
Model-Based Clustering of Spatio-Temporal Data
Spatio-Temporal Model Estimation
Regularized Spatial Maximum Covariance Analysis
Regularized Principal Component Analysis for Spatial Data
Spatial Analysis of Field Trials with Splines
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Datasets for 'spatstat'
Extension to 'spatstat' for Local Composite Likelihood
Utility Functions for 'spatstat'
Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Convert Spatial Data Using Tidy Tables
Univariate and Multivariate Spatial-Temporal Modeling
Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Statistical Process Control -- Collection of Some Useful
Functions
Statistical Process Control for Stochastic Textured Surfaces
Functions for Calibrating Control Charts
A New Reduced-Rank Linear Discriminant Analysis Method
Sparse Principal Component Analysis via Random Projections
(SPCAvRP)
Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Sparse Estimation of a Covariance Matrix
Sparse Principal Component Regression
Semi Parametric Distribution
Datasets for Spatial Analysis
Spatial Dependence: Weighting Schemes, Statistics and Models
Spatial Downscaling Using Bias Correction Approach
Data Manipulation Verbs for the Spatial Classes
Split-Population Duration (Cure) Regression
Spatio-Dynamic Wetland Plant Communities Model
Stochastic Proximity Embedding
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment,
Peak Based Processing, Quantitative Analysis and Visualizations
A Data Specification Format and Interface
Alternative spectral clustering, with automatic estimation of k
Spectroscopy Related Utilities
Statistical package for species richness estimation
Prepare Species Distributions for the Use in Phylogenetic
Analyses
Fit Mixtures of Archetype Species
Specificity of personality trait-outcome (or trait-trait)
associations
Metabolomics and Spectral Data Analysis and Mining
Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Storing, Manipulating and Analysis Spectroscopy and Associated
Data
Common Methods of Spectral Data Analysis
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
Approximate Gaussian Processes Using the Fourier Basis
Diffusion Map and Spectral Map
Spectra Visualization, Organizer and Data Preparation
Class and Methods for Hyperspectral Data
Estimation of the Relative Importance of Factors Affecting
Species Distribution Based on Stability Concept
Fitting Linear and Generalized Linear Models to Large Data Sets
Semiparametric Estimating Functions
Semiparametric efficient estimation for a two-sample treatment
effect
Calculation of the Standardised Precipitation-Evapotranspiration
Index
Correct the Spelling of a Given Word in the English Language
Tools for Spell Checking in R
Auxiliary Functions to Estimate Centers of Biodiversity
Perform Spatial Error Estimation and Variable Importance in
Parallel
SPEW Framework for Generating Synthetic Ecosystems
Spatial Extent as Polygons with Projection
Spatial Stochastic Frontier Models
Pre-Processing and Analysis of Mid-Infrared Spectral Region
Interface Between GRASS 6+ Geographical Information System and R
Statistical Patterns in Genomic Sequences
Geographically Weighted Regression
Spherical plotting
Numerical Integration over Spheres and Balls in n-Dimensions;
Multivariate Polar Coordinates
Spherical K-Function
Estimation of spatial autoregressive models with and without
heteroskedastic innovations
Compute SPI index
A Genetic-Based Assay for the Identification of Cell Lines
Parse and Test Robots Exclusion Protocol Files and Rules
Fits Predator Preferences Model
Compute SPI Index using the Methods Genetic Algorithm and
Maximum Likelihood
Detecting Election Fraud from Irregularities in Vote-Share
Distributions
Prediction and variable selection using spike and slab
regression
Bayesian Variable Selection and Model Choice for Generalized
Additive Mixed Models
Simulation-efficient Shortest Probability Intervals
Spatial Methods and Indices
Sparse Generative Model and Its EM Algorithm
Spatial and Space-Time Point Pattern Analysis
Tools to Work with the 'Splash' 'JavaScript' Rendering and
Scraping Service
Regression Spline Functions and Classes
Combined Evaluation and Split Access of Functions
Calculate Task Split Half Reliability Estimates
Stack and Reshape Datasets After Splitting Concatenated Values
Econometric Models for Spatial Panel Data
Split Plot
Sparse Partial Least Squares (SPLS) Regression and
Classification
Supplemental S-PLUS Functionality in R
Times and Dates from S-PLUS
Time Series from S-PLUS
Spatial Predictive Modeling
Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Europe SpatialPolygonsDataFrame Builder
Continuous-Lag Spatial Markov Chains
Semiparametric Maximum Likelihood Method for Interactions
Gene-Environment in Case-Mother Control-Mother Designs
Moran's Eigenvector-Based Spatial Regression Models
Plotting (Social) Networks on Maps
Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Interface to Species Occurrence Data Sources
Spatial Oblique Decision Tree
Transform a Movie into a Synthetic Picture
Semiparametric proportional odds rate model
Infrastructure for Sports Analytics
Sequential Parameter Optimization Toolbox
Pull Track Audio Features from the 'Spotify' Web API
Combining Different Spatial Datasets in Cancer Risk Estimation
Modeling Spatial Poisson and Related Point Processes
Sparse Arrays and Multivariate Polynomials
Statistical Package for Reliability Data Analysis
Selecting a Predictive Function for a Given Gene Expression Data
Calculate Species Richness and Extrapolation Metrics
Simple Parallel R INTerface
Framework for Screening Prognostic Interactions
Sparse and Non-Sparse Partial Robust M Regression and
Classification
Sparse modeling toolkit
Wald's Sequential Probability Ratio Test
Optimization of Sample Configurations using Spatial Simulated
Annealing
Selecting Spatial Scale of Covariates in Regression Models
Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation
Site Percolation on Square Lattice (SPSL)
Spatial Survey Design and Analysis
Sierpinski Pedal Triangle
Spatially Varying and Spatio-Temporal Dynamic Linear Models
Constrained Spatiotemporal Mixed Models for Exposure Estimation
Nonparametric Hypothesis Tests of Isotropy and Symmetry
Functions for Spatial Thinning of Species Occurrence Records for
Use in Ecological Models
Spatio-Temporal Bayesian Modelling
SemiParametric Transformation Model Methods
Spatial Uncertainty Propagation Analysis
Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R"
Spy vs. Spy Data
Sparse Quadratic Discriminant Analysis
Manipulate R Data Frames Using SQL
Connection wrapper to SQLite databases
Rendering Parameterized SQL and Translation to Dialects
Utilities for Generating SQL Queries from Model Objects
Utilities for working with SQL files
subset quantile normalization
Database Query Interfaces
Squared Extrapolation Methods for Accelerating EM-Like Monotone
Algorithms
Color-Based Plots for Multivariate Visualization
Statistical Quantification of Individual Differences
Selection Response Analysis
Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Sparse Redundancy Analysis
Nonparametric Smooth ROC Curves for Continuous Data
The Stepwise Response Refinement Screener (SRRS)
'dplyr'-Like Syntax for Summary Statistics of Survey Data
Fisheries Stock Assessment Simulation Testing with Stock
Synthesis
Simultaneous Signal Analysis
Sample Size Adjusted for Nonadherence or Variability of Input
Parameters
Statistics Norway's Miscellaneous Small Tools
Semi-Supervised Classification Methods
Robust Correlation Estimation and Testing Based on Spatial Signs
Sample Size Determination (SSD) for Unordered Categorical Data
Functions to Analyze Single System Data
Stacked Species Distribution Modelling
Tools Developed for Structured Sufficient Dimension Reduction
(sSDR)
Spatial Stochastic Frontier Analysis
Fitting of parametric models using summary statistics
Local and remote system commands with output and error capture
Sample Size Calculations for Microarray Experiments
Sample Size Calculation for RNA-Seq Experimental Design
Stable Sparse K-Means
Semi-Supervised Learning
The Spike-and-Slab LASSO
Fit and Analyze Smooth Supersaturated Models
Skew Scale Mixtures of Normal Distributions
Robust estimation and inference in sample selection models
Scale-Shape Mixtures of Skew-Normal Distributions
Spatial Modeling on Stream Networks
Smoothing Splines on the Sphere
Estimating Hidden Population Size using Respondent Driven
Sampling Data
Sakai Sequential Relation Analysis
Two-dimensional sociometric status determination with rating
scales
Sample Size Calculation using Restricted Mean Survival Time
Tools for Importing Files in the Triple-s (Standard Survey
Structure) Format
State space models
Sparse SVD
Fitting Semi-Parametric log-Symmetric Regression Models
Shrinkage t Statistic and Correlation-Adjusted t-Score
Probability Functions and Generalized Regression Models for
Stable Distributions
Stable Distribution Functions
Estimate the Four Parameters of Stable Laws using Different
Methods
Stable Specification Search in Structural Equation Models
Stability Selection with Error Control
Stylized concatenation of data.frames or ffdfs
Stack Overflow's Greatest Hits
Fish Migration Monitoring
'ODBC' Connection Class for Package stacomiR
Mixture of Two-Stage Logistic Regressions with Fixed Candidate
Knots
Modelling the Population Dynamics of a Stage-Structured Species
in Continuous Time
Measuring Stakeholder Influence
Spatio-Temporal Analysis and Modelling
Statistical Analysis of Mixed Ploidy Populations
Spatial Temporal Analysis of Moving Polygons
Statistical Analysis of Non-Detects
Tools for Standardizing Variables for Regression in R
Standardize Text
C++ Header Files for Stan
Simultaneous Truth and Performance Level Estimation
Spike Train Analysis with R
Well-Formatted Regression and Summary Statistics Tables
Modelling Space Time AutoRegressive Moving Average (STARMA)
Processes
Population Structure Model Inference and Visualisation
Single to Double Arm Transition Design for Phase II Clinical
Trials
Automatically Retrieve Multidimensional Distributed Data Sets
Functions for the STARTS Model
Friendly R Startup Configuration
Utilities for Start-Up Messages
Datasets for Stat2
Tools Inspired by 'Stata' to Manipulate Tabular Data
Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Extract Statistics from Articles and Recompute p Values
Statistical Complexity and Information Measures for Time Series
Analysis
Statistical Analysis for Environmental Data
Read and Write StatDataML Files
U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth
Maps for USA States
Shapefiles for the Contiguous United States of America
Statistical Methods for Graphs
Get Hourly Meteorological Data from Global Stations
Statistical Functions for Probability Distributions
Statistical Matching
Easy Data Manipulation, Data Quality and Statistical Checks
Statistical Modeling
Software Tools for the Statistical Analysis of Network Data
Common R Scripts and Utilities Used by the Statnet Project
Software
A Graphical User Interface for Network Modeling with 'Statnet'
Statistical Tools for Social Network Analysis
Statistical Performance Measures to Evaluate Covariance Matrix
Estimates
Graduate Statistics Program Datasets
Quotes on Statistics, Data Visualization and Science
Statistical Rank Aggregation: Inference, Evaluation, and
Visualization
A Wrapper for the API of Statistics Denmark
Simultaneous Tolerance Bounds
Stein's Covariance Estimator
Calculate the Standardized Difference for Numeric, Binary and
Category Variables
Regression Standardization
C++ Standard Library Vectors in R
ICA and Tests of Independence via Multivariate Distance
Covariance
Testing Steepness of Dominance Hierarchies
Semi-Parametric Stein-Like Estimator with Instrumental Variables
stellar evolution tracks and isochrones
Spatio-temporal models in R
ABC-SMC Inference of STEPCAM
Subpopulation Treatment Effect Pattern Plot (STEPP)
Stepwise Forward Variable Selection in Penalized Regression
L2 penalized logistic regression with a stepwise variable
selection
Multiscale Change-Point Inference
Stepwise Regression Analysis
Step-Wise Signal Extraction via Marginal Likelihood
Stepwise detection of recombination breakpoints
Multiple Testing Method to Control Generalized Family-Wise Error
Rate and False Discovery Proportion
Stereo Camera Calibration and Reconstruction
Klimontovich's S-Theorem Algorithm Implementation and Data
Preparation Tools
Calculation of the Standardized Temperature Index
Fits Stickbreaking, Multiplicative and Additive Models to Data
Persist Attributes Across Data Operations
Separable Gaussian Process Interpolation (Emulation)
Stineman, a consistently well behaved method of interpolation
Enhanced Seasonal Decomposition of Time Series by Loess
Estimation of the Structural Topic Model
Structural Topic Model Browser
A Tool for Structural Topic Model Visualizations
Spatio-Temporal Median Polish
Rapid and Accurate Genetic Prediction Modeling for Genome-Wide
Association or Whole-Genome Sequencing Study Data
Shiny Application for Creating STM Models
Stochastic Mortality Modelling
Plots a QQ-Norm Plot with several Gaussian simulations
Fit a Spatial Occupancy Model via Gibbs Sampling
Stochastic Profiling using Maximum Likelihood Estimation
Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Real-Time Stock Price & Volume in China Market
Fast Functions for Stock Market Analysis
R Functions for Solving Stoichiometric Equations
Multilingual Stopword Lists
Write Storm Bolts in R using the Storm Multi-Language Protocol
Model Tropical Cyclone Wind Speeds
Simple Key Value Stores
Theme Enrichment Analysis for Stories
Stochastic Simulator for Reliability Modeling of Repairable
Systems
Selection of Training Populations by Genetic Algorithm
Sustainable Transport Planning
Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Space-Time Point Pattern Simulation, Visualisation and Analysis
Perform residual analysis on space-time point process models
STR Decomposition
Ranking of Pathogen Strains
Stratigraphic Tree Analysis for Palaeontology
An Implementation of the Stratification Index
Summaries and Population Structure Analyses of Genetic Data
Optimal Stratification in Stratified Sampling
Strategic Players
Generic Framework to Analyze Trading Strategies
Univariate Stratification of Survey Populations
Performs Stratified Covariate Balancing for Data with Discrete
and Continuous Outcome Variables
Builds Trees by Sampling Variables in Groups
Strategic Selection Estimator
Optimal Stratification in Stratified Sampling Optimization
Algorithm
Stratified Weibull Regression Model
Infrastructure for Data Stream Mining
Parametric Ordinary Differential Equations Model of Growth,
Death, and Respiration of Macroinvertebrate and Algae Taxa
Calculate Single Station Metabolism from Diurnal Oxygen Curves
Interface for MOA Stream Clustering Algorithms
Access to Twitter Streaming API via R
Streamlined Estimation of Survival for Static, Dynamic and
Stochastic Treatment and Monitoring Regimes
Fetch and plot financial stress index and component data
Computation and Estimation of Reliability of Stress-Strength
Models
Strided Iterator and Range
Convenient Base R String Handling
Approximate String Matching and String Distance Functions
Dynamic String Formatting
Character String Processing Facilities
Simple, Consistent Wrappers for Common String Operations
Lighten your R Model Outputs
Structured Trellis Displays Without Strips for Lattice Graphics
Extract Text from RTF File
R Codes and Datasets for Generalized Linear Mixed Models: Modern
Concepts, Methods and Applications by Walter W. Stroup
Testing, Monitoring, and Dating Structural Changes
False Discovery Control Procedure Integrating the Prior
Structure Information
Tree-Structured Clustering
Multiple Testing for Hypotheses with Hierarchical or Group
Structure
STRUctural Modeling of Latent Variables for General Pedigree
Process Control and Internal Validation of Forensic STR Kits
Structural Time Series Models
Class and Methods for Structural Time Series Models
Stubbing Framework for R
Student's t Vector Autoregression (StVAR)
Non-Invasive Pretty Printing of R Code
Stylometric Analyses
Bivariate Empirical Subcopula
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
Detect Subgroup with an Enhanced Treatment Effect
Methods for exploring treatment effect heterogeneity in subgroup
analysis of clinical trials
Subgroup Discovery and Bump Hunting
Patient Subgroup Identification for Clinical Drug Development
Gene selection using Lasso for Microarray data with user-defined
genes fixed in model
Automatic Lesion Incidence Estimation and Detection using
Multi-Modality Longitudinal Magnetic Resonance Images
Effect Modification in Observational Studies Using the Submax
Method
Within Outlying Mean Indexes: Refining the OMI Analysis
Identify Metabolic Subpathways Mediated by MicroRNAs
Identify Signal Subpathways Competitively Regulated by LncRNAs
Based on ceRNA Theory
Unconstrained Optimization using the Subplex Algorithm
Manage Sub-Processes in R
Computes Copula using Ranks and Subsampling
Subsample Winner Algorithm for Variable Selection in Linear
Regression with a Large Number of Variables
Computing Subscores in Classical Test Theory and Item Response
Theory
Systematic Screening of Study Data for Subgroup Effects
Selecting Variable Subsets
An Ensemble Method for Combining Subset-Specific Algorithm Fits
Interface to OpenSubspace
Interface to 'subspaceMOA'
Subgroup Specific Optimal Dose Assignment
Cluster analysis to find molecular subtypes and their assessment
Visual Exploration of Protein Alignments Resulting from Multiple
Substitution Matrices
Sudoku Puzzle Generator and Solver
Tools for Making and Spoiling Sudoku Games
Subsampling method
Supporting Graphs for Analysing Time Series
Easy Calculation and Visualisation of Confidence Intervals
Tools to Quickly and Neatly Summarize Data
Spatio-Temporal Under-Five Mortality Methods for Estimation
'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence Sunburst
Compute Sun Position, Sunlight Phases, Moon Position and Lunar
Phase
Survival Analysis using Copulas
Quantification of the effect of geographic versus environmental
isolation on genetic differentiation
Sunter's sampling design
The Self-Updating Process Clustering Algorithms
Supervised Clustering of Predictor Variables such as Genes
Supervised Cluster Analysis
Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
R Code for Testing Markov Chain Nonconvergence
Exact Test and Visualization of Multi-Set Intersections
Superfast Likelihood Inference for Stationary Gaussian Time
Series
A Graphical Tool for Exploring Complex Datasets Using Heatmaps
Super Learner Prediction
Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011)
Supervised principal components
Sequential Rank Agreement
Supervised Classification Learning and Prediction using Patient
Rule Induction Method (PRIM)
Supplementary Distributions
Support Points
Basic Functions for Supporting an Implementation of Best-Worst
Scaling
Basic Functions for Supporting an Implementation of Case 2
Best-Worst Scaling
Basic Functions for Supporting an Implementation of Choice
Experiments
Calculates Likelihood Support Intervals for Common Data Types
Surrogate Residuals for Ordinal and General Regression Models
Fitting Hansen Models to Investigate Convergent Evolution
Evaluation of Surrogate Endpoints in Clinical Trials
Early Testing for a Treatment Effect using Surrogate Marker
Information
Evaluation of Failure Time Surrogate Endpoints in Individual
Patient Data Meta-Analyses
LaTeX descriptive statistic reporting for survey data
Inference for Model-Free Between-Group Parameters for Censored
Survival Data
Estimate accuracy measures for risk prediction markers from
survival data
Estimators of prediction accuracy for time-to-event data
Two-Sample Tests Based on Differences of Kaplan-Meier Curves
C-statistics for risk prediction models with censored survival
data
Survival Analysis for Pathways
Correlation of Bivariate Survival Times
Discrete Time Survival and Longitudinal Data Analysis
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Relative survival, AER and SMR based on French death rates
Analysis of Complex Survey Samples
Tools for the Bootstrap with Survey Data
Tools to Work with Survey Data
Generate a Survey that can be Completed by Survey Respondents
Helps Manage Outliers in Sample Surveys
Survey Planning Tools
The Gini concentration test for survival data
Survival Analysis in Health Economic Evaluation
IDI and NRI for comparing competing risk prediction models with
censored survival data
Inference and Prediction in an Illness-Death Model
Survival Analysis
Continuous Biomarker Assessment by Exhaustive Survival Analysis
Penalised Maximum Likelihood for Survival Analysis Models
Time-dependent ROC curve estimation from censored survival data
Survival Support Vector Analysis
Survival Prediction by Joint Analysis of Microarray Gene
Expression Data
Data for Package 'survJambda'
Analysis of Proportional Hazards Model with Sparse Longitudinal
Covariates
Drawing Survival Curves using 'ggplot2'
Miscellaneous Functions for Survival Data
Presmoothed Estimation in Survival Analysis
Rank Based Survival Modelling
Weibull Regression for a Right-Censored Endpoint with
Interval-Censored Covariate
Comparing Restricted Mean Survival Time
Simulation of Simple and Complex Survival Data
Power Calculations for SNP Studies with Censored Outcomes
Compute Targeted Minimum Loss-Based Estimates in Right-Censored
Survival Settings
Utility Functions for Survival Analysis
Forecasting Data using Alpha-Sutte Indicator
Measures of the Sturdiness of Regression Coefficients
Surrogate variable analysis using partial least squares in a
gene expression study
Data-Driven Identification of SVAR Models
2d and 3d Space-Varying Coefficient Models
Interfaces to Various State-of-Art SVD and Eigensolvers
SciViews GUI API - Dialog boxes
SciViews GUI API - Dialog boxes using Tcl/Tk
Singular Value Decomposition Visualization
SVD visualization tools
Svensson's Method
An 'SVG' Graphics Device
R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
SciViews GUI API - Functions to manage GUIs
3D Animated Interactive Visualizations Using SVG
SciViews GUI API - R HTTP server
SciViews GUI API - IDE and code editor functions
SciViews GUI API - Functions to interface with Komodo Edit/IDE
Linear/Nonlinear SVM Classification Solver Based on ADMM and
IADMM Algorithms
SciViews GUI API - Miscellaneous functions
SVMMaj algorithm
Causal Effect Estimation and Diagnostics with Support Vector
Machines
The SVM Path Algorithm
Tools for Semantic Vector Spaces
SciViews GUI API - R Socket Server
SciViews GUI API - Sweave functions
SciViews GUI API - Tools (wrapper for packages tools and
codetools)
SciViews GUI API - Unit testing
SciViews GUI API - Widgets & Windows
Nomograms for Right-Censored Outcomes from Survey Designs
A package for complex surveys including plausible values
Subsampling Winner Algorithm for Classification
Dynamically Generates Documentation from a 'Swagger' Compliant
API
Visualization, Analysis and Adjustment of High-Dimensional Data
in Respect to Sample Annotations
A Null Model Adapted to Abundance Class Data in Ecology
Ensemble Learning Algorithms Based on Support Vector Machines
Read, Inspect, and Manipulate Color Swatch Files
A multi-OS implementation of the TAMU SWAT model
Stepped Wedge Cluster Randomized Trial (SW CRT) Design
Utilities for Sweave Together with TeX 'listings' Package
Tidy Tools for Forecasting
Handling of Swedish Identity Numbers
Miscellaneous Functions for Southwest Fisheries Science Center
Learn R, in R
A Toolbox for Writing 'swirl' Courses
Air Quality Data of Switzerland for one year in 30 min
Resolution
Switching nonparametric regression models for a single curve and
functional data
Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Publish Package Manifests to GitHub Gists
R Interface for US EPA's SWMM
Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Efficient Constrained Based Modelling
Cost Constrained FLux Balance Analysis: MetabOlic Modeling with
ENzyme kineTics (MOMENT)
Cycle-Free Flux Balance Analysis
Dynamic FBA : Dynamic Flux Balance Analysis
Using Gene Expression Data to Improve Flux Balance Analysis
Predictions
SBML Integration in Package 'Sybil'
Syllable Counting and Readability Measurements
A Small Collection of Syllable Counting Functions
Hyphenation and Syllable Counting for Text Analysis
Analysis of Symbolic Data
Symbol plots
Partitioned Symmetric Matrices
Symbolic central and noncentral moments of the multivariate
normal distribution
Symmetric Tempered Stable Distributions
Framework for the Analysis of Genomic Prediction Data using R
Data for the Synbreed Package
Boost Mutex Functionality in R
Methods for computing spatial, temporal, and spatiotemporal
statistics
Synchrosqueezed Wavelet Transform
Subsample Temporal Data to Synchronal Events and Compute the MCI
A Synchronized Tausworthe RNG for R and Python
SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities
Interface to The Synergizer service for translating between sets
of biological identifiers
Inference and Analysis of Sympatry Networks
Synthetic Likelihood methods for intractable likelihoods
Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
Synthetic Control Group Method for Comparative Case Studies
Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Portable System Utilities
Loading Fonts into R
System Identification in R
Estimating Systems of Simultaneous Equations
A Toolbox for Systemic Risk
Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Functions for Applying the T^2-Test for Equivalence
Functions for Creating Summary Tables for Statistical Reports
Split and Recombine Your Data
Write Formatted Tables in Excel Workbooks
Table 1 Heatmap
Exports Reproducible Summary Tables to Multi-Tab Spreadsheet
Files (.xls or .xlsx)
A Tool to Create HTML Tables
Combines 'data.table' and 'matrix' Classes
Table Monster
Create 'Table 1' to Describe Baseline Characteristics
Represents tables as semi-graphic displays
Formula-Driven Table Generation
TableToLongForm
Tableplot, a Visualization of Large Datasets
Tabplotd3, interactive inspection of large data
Tidy Tools for 'Raster' Data
R based tabu search algorithm
New and Extended Plots, Methods, and Panel Functions for
'lattice'
Helpers for Data Analysis and Presentation Focused on Undergrad
Psychology
Tag Clouds
Minimum Distance Estimation of Tail Dependence Models
Estimate the Probability in the Upper Tail of the Aggregate Loss
Distribution
The Tail-Rank Statistic
Test Analysis Modules
The TanB Distribution
A Two-Stage Approach to Maximize Interpretability of Drug
Response Models Based on Multiple Molecular Data Types
The Grammar of Tables
Time Course Analysis of Variance for Microarray
Illustrations from Tao Te Programming
Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Manage Tick-by-Tick Transaction Data
Bayesian Modeling of Autoregressive Threshold Time Series Models
Replicate Tariff Method for Verbal Autopsy
Collection of utility and convenience functions
Schedule R Scripts and Processes with the Windows Task Scheduler
Combine and Export Data Frames
Text Analysis Utilities
Earthquake Traveltime Calculations for 1-D Earth Models
Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Clean Covariance Matrices Using Random Matrix Theory and
Shrinkage Estimators for Portfolio Optimization
Common types for tawny
Taxonomic Classes
Taxonomic Information from Around the Web
Tools for Working with 'Taxonomic' Databases
Handling Taxonomic Lists
Functions to Work with NCBI Accessions and Taxonomy
Taxonomic Standardization of Plant Species Names
Teitz and Bart's p-Median Algorithm
Functions for tuberculosis diagnostics research
Tree Branches Evaluated Statistically for Tightness
TBF Methodology Extension for Multinomial Outcomes
Convert Tibbles or Data Frames to Xts Easily
Survival Analysis using a Transform-Both-Sides Model
Treatment Choice Cox Model
Simple TCGA Data Access for Integrated Statistical Analysis in R
Retrieve Genomic and Clinical Data from TCGA
Time-Course Gene Set Analysis
Time-Course Gene Set Analysis for RNA-Seq Data
Client for the Cancer Imaging Archive REST API
Tcl/Tk Additions
Robust Trimmed Clustering
Data from the 2010 Tourism Forecasting Competition
ToxCast Data Analysis Pipeline
Advanced Data Analysis of Immune Receptor Repertoires
Statistical Tools for Topological Data Analysis
Analyze High-Dimensional Data Using Discrete Morse Theory
A Boosted Tweedie Compound Poisson Model
Gene Network Inference from Time-Series Transcriptomic Data
Time-Domain Deconvolution of Seismometer Response
Granier's Sap Flow Sensors (TDP) Analysis
Target Diagram
Nonparametric Estimation of Time-Dependent ROC Curve from Right
Censored Survival Data
TDT tests for extended haplotypes
Threshold Estimation Approaches
Teaching Bayesian Inference
Apps for Teaching Statistics, R Programming, and Shiny App
Development
Demonstrations for Teaching and Learning
Selection of Samples and Parameter Estimation in Finite
Population
Fits neural networks to learn about back propagation
Color Palettes for Pro Sports Teams
Turbulence Time Series Event Detection and Classification
An Implementation of the Typicality and Eccentricity Data
Analysis Framework
Trimmed Elemental Estimation for Linear Models
Model-Based Clustering and Classification with the Multivariate
t Distribution
R Wrapper Around the Telegram Bot API
Social Representation Theory Application: The Free Evocation of
Words Technique
Climate Data from Wang and Dillon
Methods for Temporal Disaggregation and Interpolation of Time
Series
Temperature Response
A System for Working with Templates
Estimating Conditional Distributions
Temporal Sensory Data Analysis
Tensor product of arrays
Advanced tensors arithmetic with named indices
Bayesian Tensor Factorization
Blind Source Separation Methods for Tensor-Valued Observations
R Interface to 'TensorFlow'
Sparse Tensors in R
Covariance Inference and Decompositions for Tensor Datasets
Target Equivalence Range Design
Test for A+B Traditional Escalation Rule
Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Zero-coupon Yield Curve Estimation
A Package to Generate Ternary Plots
Visualisation, verification and calibration of ternary
probabilistic forecasts
Diversification Rate Estimation and Fast Simulation of
Reconstructed Phylogenetic Trees under Tree-Wide
Time-Heterogeneous Birth-Death Processes Including
Mass-Extinction Events
Open Source OCR Engine for R
A Hypothesis Testing Framework for Validating an Assay for
Precision
Missing Item Responses Imputation for Test and Assessment Data
Tests and checks characteristics of R objects
Dependence Tests for Two Variables
Test Functions for Simulation Experiments and Evaluating
Optimization and Emulation Algorithms
Bootstrap Test for Similarity of Dose Response Curves Concerning
the Maximum Absolute Deviation
A Simple Package for Testing R Packages
GUI for Entering Test Items and Obtaining Raw and Transformed
Scores
Unit Testing for R
Utils and 'RStudio' Addins to Make Testing Even More Fun
Satisfaction Analysis using Tetraclasse Model and Llosa Matrix
Parses LaTeX Documents for Errors
Personalizes and Randomizes Exams Written in 'LaTeX'
Statistical Modelling of Extreme Values
Two-table ExPosition
Compile and Preview Snippets of 'LaTeX' in 'RStudio'
Conversion of R Regression Output to LaTeX or HTML Tables
Modern Text Mining Framework for R
N-Gram Based Text Categorization
Text Cleaning Tools
Discovering Latent Treatments in Text Corpora and Estimating
Their Causal Effects
Praat TextGrid Objects in R
Textile Images
Inverse Regression for Text Analysis
Functions for Text Mining and Topic Modeling
Integration of Text Mining and Topic Modeling Packages
Textual Data Analysis Package used by the TXM Software
Summarize Text by Ranking Sentences and Finding Keywords
Read Text Documents into R
n-Gram Text Regression, aka Concise Comparative Summarization
Detect Text Reuse and Document Similarity
Tools for Reshaping Text
Tools for Stemming and Lemmatizing Text
Text Processing for Small or Big Data Files
Utilities for Handling Strings and Text
Technology Forecasting using DEA (Data Envelopment Analysis)
Forensic Glass Transfer Probabilities
Interface to 'TensorFlow' Estimators
Optimal Thresholding Fisher's P-Value Combination Method
Efficient and Accurate P-Value Computation for Position Weight
Matrices
Time Frame User Utilities
Time Frame Coding Kernel
Time Frame Coding Kernel Extensions
Training Run Tools for 'TensorFlow'
R API to TrueFX(tm)
Thermoluminescence Glow Curve Deconvolution
The Standard Distribution Functions for the Truncated
Generalised Gamma Distribution
Binary Regressions under Independent Student-t Priors
Bayesian Treed Gaussian Process Models
Compute and Plot Tracheidograms
TH's Data Archive
Find Out Who Maintains the Packages you Use
Give your Dependencies Stars on GitHub!
Exploring Thematic Structure and Predicted Functionality of 16s
rRNA Amplicon Data
Thermal Image Analysis
Calculate Thermal Indexes
Temperature Measurement with Thermocouples, RTD and IC Sensors
Analysis and Visualization Tools for Microbial Community Data
Genetic Rare Variants Tests
Temporal Hierarchical Forecasting
Thinknum Data Connection
Design and Analysis of Clinical Non-Inferiority or Superiority
Trials with Active and Placebo Control
Thresholded variable selection and prediction based on
estimating equations
ML Estimator for Baseline-Placebo-Treatment (Three-Group)
Experiments
Interactive 3D Scatter Plots, Networks and Globes
Three-Way Component Analysis
Represent Precise Coordinates in Three Words
Threshold Regression
Threshold Regression for Interval-Censored Data with a Cure Rate
Option
Threshold Estimation
Threshold Selection and Uncertainty for Extreme Value Analysis
Three-Stage Least Squares Estimation for Systems of Simultaneous
Equations
Simple Data Frames
Time Aware Tibbles
R Interface to TIBCO 'tibbr'
Execution Functions for Tick Data Back Test
Tic-Tac-Toe Game
Functions for timing R scripts, as well as implementations of
Stack and List structures
Create dynamic reports using a TiddlyWiki template
Analysis and Prediction of Tides
Harmonic Analysis of Tides
Quasi-Periodic Time Series Characteristics
Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides
Tidyverse-Compatible Bootstrapping
Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Tidy Verbs for Dealing with Genomic Data Frames
A Tidy API for Graph Manipulation
Extract and Tidy Canadian 'Hydrometric' Data
Some Information-Theoretic Functions in the 'Tidy' Style
Bayesian Analysis to Compare Models using Resampling Statistics
Tidy Quantitative Financial Analysis
Easily Tidy Data with 'spread()' and 'gather()' Functions
Tidy RSS for R
Select from a Set of Strings
Create a Tidy Statistics Output File
String Distance Calculation with Tidy Data Principles
Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
A Tidy Tool for Phylogenetic Tree Data Manipulation
Easily Install and Load the 'Tidyverse'
Read Untidy Excel Files
Read and write TIFF images
TIme series of Grouped ERrors
Pre-Process of Time Series Data Set in R
R Functions for Elementary Statistics
R Tools for Inferring New Immunoglobulin Alleles from Rep-Seq
Data
Tight Clustering
'tigreBrowser' Database Writer
Load Census TIGER/Line Shapefiles
R Graphics Output in LaTeX Format
R Spatial Data for Tilegrams
Hidden Markov Models for ChIP-on-Chip Analysis
Tile Manager
Characterization of functional genes in complex microbial
communities using tiling DNA microarrays
Variable Selection via Tilted Correlation Screening Algorithm
Survival and Competing Risk Analyses with Time-to-Event Data as
Covariates
Rmetrics - Chronological and Calendar Objects
Time Delay Estimation for Stochastic Time Series of
Gravitationally Lensed Quasars
Timelines for a Grammar of Graphics
Visualization for Time Series Data
Timeline and Time Duration-Related Tools
Time Machine
Time-ordered and time-aggregated network analyses
Time Projections
Flexible Regression Models for Survival Data
Time-Dependent ROC Curve and AUC for Censored Survival Data
Bootstrap computations for time series objects
Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Rmetrics - Financial Time Series Objects
Manage Time Series with R and PostgreSQL
A Tool Kit for Working with Time Series in R
Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Interface to the TimeTree of Life Webpage
Create Interactive Timeline Visualizations in R
Date Calculations and Manipulation
Target Inhibition Interaction using Maximization and
Minimization Averaging
Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy
Time Series Analysis and Control Package
A Universal Non-Uniform Random Number Generator
Inference tests for TExPosition
Transform Functions using Decorators
'tint' is not 'Tufte'
A Lightweight Template for Data Analysis Projects
Helper Functions to Install and Maintain 'TeX Live', and Compile
'LaTeX' Documents
Using Tip Dates with Phylogenetic Trees in BEAST (Software for
Phylogenetic Analysis)
Automated measure-based classification for flint tools
Enhanced Tipping Point Displays the Results of Sensitivity
Analyses for Missing Data
Tipping Point Analyses
Time Indexes and Time Indexed Series
Titration analysis for mass spectrometry data
Threshold Indicator Taxa Analysis
Titanic Passenger Survival Data Set
Acid/Base, Complexation, Redox, and Precipitation Titration
Curves
Pairwise Distance Estimation with TKF91 and TKF92 Model
TK widget tools for rgl package
TK Rplot
Non-Convex Optimization and Statistical Inference for Sparse
Tensor Graphical Models
Two-Level Behavior Classification
Tools for Thermoluminescences Dating
Trimmed Maximum Likelihood Estimation
Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Linear Student-t Mixed-Effects Models with Censored Data
Calculate TL-Moments and Convert Them to Distribution Parameters
Text Mining Package
Import texts from files in the Alceste format using the tm text
mining framework
Text Mining Distributed Corpus Plug-In
Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Import Articles from 'Factiva' Using the 'tm' Text Mining
Framework
Import Articles from 'LexisNexis' Using the 'tm' Text Mining
Framework
Text Mining E-Mail Plug-In
Retrieve Structured, Textual Data from Various Web Sources
Thematic Maps
Thematic Map Tools
Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
MCMC Sampling from 'TMB' Model Object using 'Stan'
A Text Mining Toolkit for Chinese
Access to TMDb API - Apiary
Truncated Multivariate Gaussian Sampling
Turner Miscellaneous
Targeted Maximum Likelihood Estimation
Targeted Learning of a NP Importance of a Continuous Exposure
Targeted Maximum Likelihood Estimation for Network Data
Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics
Trauma Mortality Prediction Model
Manage 'tmux'
Truncated Multivariate Normal Simulation
Truncated Multivariate Normal and Student t Distribution
Temporal Network Autocorrelation Models (TNAM)
Temporal Network Centrality (TNC) Measures
Software for Analysis of Weighted, Two-Mode, and Longitudinal
Networks
Identification of Conditionally Essential Genes in Transposon
Sequencing Studies
Big Data in-Database Analytics that Scales with Teradata Aster
Distributed Platform
Total Operating Characteristic Curve and ROC Curve
'Toggl.com' Api for 'Rstudio'
A Consistent Interface to Tokenize Natural Language Text
Fundamental Definitions and Utilities of the Time Oriented
Language (TOL)
Statistical Tolerance Intervals and Regions
Multivariate Tools for Compositional Data Analysis
Cardinal to Ordinal Number Conversion
Topic Models
Inference, Aggregation and Visualization for Top-K Ranked Lists
Implementation of the hydrological model TOPMODEL in R
Gene Set Analysis Exploiting Pathway Topology
TOPSIS method for multiple-criteria decision making (MCDM)
Instrumental Variables Two Stage Least Squares estimation
Two One-Sided Tests (TOST) Equivalence Testing
Total Cophenetic Index: An R Package to Quantify Tree Balance
Tools of Utilization and Cost in Healthcare
Implement Tour Methods in R Code
A Tour GUI using gWidgets
Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Batch Processing, Modeling and Visualizing the Dose-Response of
High-Throughput Screening Bioassay
Experimental design for binary toxicity tests
Estimation of Transition Probabilities for the Illness-Death
Model
Estimation and Inference of Two-Way pAUC, pAUC and pODC
Methods for Measuring Functional Diversity Based on Trait
Probability Density
Tree preserving embedding
A Novel Topology-Based Pathway Enrichment Analysis Approach
Estimation of Transition Probabilities in Multistate Models
Temporal Process Regression
A Tool for Downloading Functional Traits Data for Plant Species
Slick Call Stacks
Standardize Tracheidograms
Store Objects on Disk Automatically
Particle Tracking and Demography
Infrastructure for Running and Cycling Data from GPS-Enabled
Tracking Devices
Reconstruct animal tracks from magnetometer, accelerometer,
depth and optional speed data
Read, Manipulate and Visualise Magnetic Resonance Images
Tree Ring Analysis of Disturbance Events in R
Trades, Curves, Rating Tables, Add-on Tables, CSAs
An interface for creating GUIs modeled in part after traits UI
module for python
Species Trait Data from Around the Web
A Predictive Model for Trait Based Community Assembly of Plant
Species
Trajectory Analysis
Trajectories Data Mining
Classes and Methods for Trajectory Data
Animal Trajectory Analysis
Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
TraMineR Extension
'TRFLP' Analysis and Matching Package for R
Automated Transcription of Audio Files Through the HP IDOL API
The Transfer Entropy Package
Bindings for the Google Translate API v2
Bindings for the Google and Microsoft Translation APIs
Toolset for Translating SPSS-Syntax to R-Code
R Manuals Literally Translated in Korean
Fit Linear Transformation Models for Right Censored Data
Implementation of Transportation Problem Algorithms
Optimal Transport in Various Forms
Estimating a Survival Distribution in the Presence of Dependent
Left Truncation and Right Censoring
The Trapezoidal Distribution
Transmission Ratio Distortion
Evaluate Treatment Selection Biomarkers
Sensitivity Analysis for Causal Inference
Classification and Regression Trees
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Hierarchical Multinomial Processing Tree Modeling
Numerical Calibration of Proxy-Climate Relationships
Cluster Distances Through Trees
Centre of Mass Assessment and Consolidation of Trees
Tree-Based Discriminant Analysis
An Adaptive Multi-Scale Basis for High-Dimensional, Sparse and
Unordered Data
Phylogenetic Tree Manipulation Class and Methods
Treemap Visualization
Draw Treemaps in 'ggplot2'
Estimating birth and death rates based on phylogenies
Exact and Asymptotic K Sample Permutation Test
'dplyr' Functionality for Matched Tree and Data Objects
Phylogenetic Tree Search Using Custom Optimality Criteria
Simulating Phylogenetic Trees
Simulating Phylogenetic Trees under General Bellman Harris and
Lineage Shift Model
Statistical Exploration of Landscapes of Phylogenetic Trees
Methods for Tree-Based Local Adaptive Thresholding
Create and Navigate Large Multi-Panel Visual Displays
R API for Trello
Non-Parametric Trend Tests and Change-Point Detection
Odds Ratio Estimation and Power Calculation for the Trend in
Trend Model
Simulating Triad Genomewide Genotypes
Clinical Trial Designs in 'RStan'
R functions in Chapter 3,4,6,7,9,10,11,12,14,15
Provides the Standard Distribution Functions for the Triangle
Distribution
Determine Position of Observer
Analysing and Visualizing Tribology Measurements
Play with the Tribe of Attributes
'Radix' Trees in 'Rcpp'
Some basic facilities for ternary fields and plots
Propensity Score Matching of Non-Binary Treatments
Cluster analysis with trimming
An Implementation of Common Response Time Trimming Methods
Trimmed opinion pools of trees in a random forest
A data smoothing approach to explore and test gene-environment
interaction in case-parent trio data
Trio Model with a Combination of Lasso and Group Lasso
Regularization
Tools for the Analysis of Animal Track Data
Triangulation of Irregularly Spaced Data
Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Diversity Measures on Tripartite Graphs
Transcriptome Overlap Measure
Tropical Algebra Functions
Tropical Fisheries Analysis
Bayesian Trophic Position Calculation with Stable Isotopes
TV Tropes Statistics
Pseudo-Vectors Containing All Permutations, Combinations and
Subsets of Objects Taken from a Vector
Functions and Datasets to Accompany the Book "The R Software:
Fundamentals of Programming and Statistical Analysis"
Transformation Trees and Forests
Implementation the TrueSkill algorithm in R
Truncated Multivariate Normal
Truncated Random Variables
GoF tests allowing for left truncated data
Truncated normal distribution
Truncated Gaussian Regression Models
Semi-parametric estimators of truncated regression models
Trust Region Optimization
Trust Region Optimization for Nonlinear Functions with Sparse
Hessians
Time Series Analysis
Tsallis q-Exp Distribution
Calculate normalising constants for Bayesian time series models
Blind Source Separation and Supervised Dimension Reduction for
Time Series
Create time series BUGS models
Likelihood-ratio Tests for Two-Sample Comparisons
Time Series Clustering Utilities
'TSdbi' Database Comparison
Analysis of Count Time Series
Time Series Cointegrated System
'TSdbi' Illustration
Time Series Database Interface
Decomposition of Time Series Data
Two-/Three-Stage Designs for Phase 1&2 Clinical Trials
Time Series Disaggregation
Distance Measures for Time Series Data
Nonlinear Time Series Models with Regime Switching
Dynamic Ensembles for Time Series Forecasting
Time Series Analysis and Computational Finance
Analysis of nonlinear time series
Entropy Based Analysis and Tests for Time Series
Multiscale Multifractal Analysis of Time Series Data
Download and Manage Data from Tehran Stock Exchange
Two Stage Forecasting (TSF) for Long Memory Time Series in
Presence of Structural Break
Time Series Factor Analysis
'TSdbi' Extensions for Fame
Two Stage-Grouped Sure Independence Screening
Gui for Simulating Time Series
Two Stage Hazard Rate Comparison
Tidy Temporal Data Frames and Tools
Intermittent Time Series Forecasting
An Implementation of the TSIR Model
Mining Univariate and Multivariate Motifs in Time-Series Data
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
Truncated Scale Mixtures of Normal Distributions
Time Series Modeling for Air Pollution and Health
'TSdbi' Extensions for 'MySQL'
Tools for Temporal Social Network Analysis
T-Distributed Stochastic Neighbor Embedding for R (t-SNE)
'TSdbi' Extensions for ODBC
Detection of Outliers in Time Series
Traveling Salesperson Problem (TSP)
Transposable Sphering for Large-Scale Inference with Correlated
Data
Improved Prediction Intervals for ARIMA Processes and Structural
Time Series
Instance Feature Calculation and Evolutionary Instance
Generation for the Traveling Salesman Problem
'TSdbi' Extensions for 'PostgreSQL'
Functions for Benchmarking Time Series Prediction
Applications of the Qn Estimator to Time Series (Univariate and
Multivariate)
Time Series Segmentation of Residual Trends
'TSdbi' Extension to Connect with 'SDMX'
Execution of Time Series Models
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
'TSdbi' Extensions for 'SQLite'
Tools for Time Series Analysis and Forecasting
Ternary Search Tree for Auto-Completion and Spell Checking
Fitting and Predict Time Series Interactive Laboratory
Applied Time Series Analysis
Bayesian Modelling of Extremal Dependence in Time Series
Temporal Trend Analysis Graphical Interface
US Beer Statistics from TTB
Transcript Time Course Analysis
TeX to HTML/MathML Translators tth/ttm
Sampling and Calculating the First and Second Moments for the
Doubly Truncated Multivariate t Distribution
Technical Trading Rules
Master Curve Estimates Corresponding to Time-Temperature
Superposition
Genome-wide DNA methylation sites screening by use of training
and testing samples
Time to Target Plot
Utility functions
Travel To Work Area
Client for the YouTube API
R Client for the YouTube Analytics and Reporting API
Three-Mode Principal Components Analysis
Tufte's Styles for R Markdown Documents
Tufte-style html document format for rmarkdown
Conventional Tukey Test
Tukeys Trend Test via Multiple Marginal Models
Access to Tumblr v2 API
Tumor Growth Rate Analysis
Multi-objective parameter tuning for classifiers
Analysis of Music and Speech
Find every match, or orphan, duplicate, triplicate, or other
replicated values
A Suite of Convergence Acceleration Schemes for EM, MM and other
fixed-point algorithms
TURF Analysis for R
Turn vectors and lists of vectors into indexed structures
Turtle Graphics
Convert R Markdown Files to DataCamp Light HTML Files
Lumped Hydrological Model for Education Purposes
Total Variation Denoising
Time Value of Money Functions
Total Variation Regularization
Time-Varying Coefficients Linear Regression for Single and
Multiple Equations
Toolkit for Weighting and Analysis of Nonequivalent Groups
Evaluation of Tweedie Exponential Family Models
Interpolate Data for Smooth Animations
Twitter Collector for R and Export to 'SQLite', 'postGIS' and
'GIS' Format
Drive the API for TheyWorkForYou
Interactive manipulation of R expressions
An Interface to the Twilio API for R
R Based Twitter Client
Nonparametric test of equality between two copulas
Estimate Gene-Treatment Interaction Exploiting Randomization
Compute thresholds and power for two-stage gwas
Two-Stage Threshold Estimation
Conditional Logistic Regression: A Two-Step Estimation Method
Text based plots
Type Annotations
Parse Browser 'User-Agent' Strings into Data Frames
UAV Mission Planner
Functions to Simulate and Conduct Dose-Escalation Phase I
Studies
Interface to the Uber API
An Implementation of Re-Sampling Approaches to Utility-Based
Learning for Both Classification and Regression Tasks
UC Berkeley graduate division thesis template
General-Purpose Unconstrained Non-Linear Optimization
Fixes Column Names for Uniform Crime Report "Offenses Known and
Clearance by Arrest" Datasets
Urban Dictionary API Client
Udder Quarter Infection Data
Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Udunits-2 Bindings for R
Estimate Univariate Gaussian or Student's t Mixture
Autoregressive Model
Construct an Unsupervised Hidden Markov Model
'R' 'Markdown' Themes for 'UIUC' Documents and Presentations
UK Baby Names Data
Manipulate and Explore UK Biobank Data
Reproducible Data Retrieval from the UK Data Service
API for UK Gas Market Information
Bayesian Analysis of Location-Scale Mixture Models using a
Weakly Informative Prior
Visualization of Structures in High-Dimensional Data
Uniformly Most Powerful Tests
Simulating Realistic Gene Expression Data
Structural Equation Modeling in R with 'OpenMx'
Racing for Unbalanced Methods Selection
Function estimation via Unbalanced Haar wavelets
Implements Models of Uncertainty into the Interpolation
Functions
Uncertain Area Methods for Cut-Point Determination in Tests
Unification of Clustering Results from Multiple Datasets using
External Specifications
UNC Men's Basketball Match Results Since 1949-1950 Season
Tools for Creating Universal Numeric Fingerprints for Data
Stereological Unfolding for Spheroidal Particles
Collate Gene Annotation Data from Uniprot and NIH Gene Databases
Unimodal Additive Hazards Model
Unicode Data and Utilities
Univarate shrinkage prediction in the Cox model
Uniform Design of Experiments
Uniform Sampling of Directed Acyclic Graphs
Tests for Uniformity
Unimodal and Isotonic L1, L2 and Linf Regression
Abbreviate Strings to Short, Unique Identifiers
Unimodal Penalized Spline Regression using B-Splines
Assessment and Evaluation of Formations in United
Interactive R Unit Tests
Measurement Units for R Vectors
TAP-Compliant Unit Testing
Detection of Univariate Outliers
Univariate Pseudo-Random Number Generation
Unix System Utilities
Separate a Data Frame by Normalization
Models for Data from Unmarked Animals
Unpivot Complex and Irregular Data Layouts
Analysis and Graphics for Unreplicated Experiments
Extract Text from Rich Text Format (RTF) Documents
Stationarity Test Based on Unsystematic Sub-Sampling
ecological drift under the UNTB
United Nations General Assembly Voting Data
Updated Classification Methods using Unlabeled Data
Uplift Modeling
Unsupervised Photometric Membership Assignment in Stellar
Clusters
Unified Probability Model Fitting
A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Get Data Frame Representations of 'Elasticsearch' Results
Access the UptimeRobot Ping API
Unconditional Quantile Regression
Unit Root and Cointegration Tests for Time Series Data
R Wrapper for the 'Bit.ly', 'Goo.gl' and 'Is.gd' URL Shortening
Services
Vectorised Tools for URL Handling and Parsing
Unit Root Tests for Seasonal Time Series
Historical and Contemporary Boundaries of the United States of
America
Create US cancer datasets from SEER, IARC, and US Census data
US Census 2000 Designated Places Shapefiles and Additional
Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic
Data
US Census 2010 Suite of R Packages
Elo Rating of a USCF Member
Uncertainty Analysis for Species Distribution Models
Distance Matrix Utilities
A Collection of Handy, Useful Functions
Quantitative Analysis Made Accessible
Automate Package and Project Setup
Replaced by 'states2k' -- United States of America Map with the
NAD 1983 Albers Projection
Data Sets, Etc. for the Text "Using R for Introductory
Statistics", Second Edition
Model-Based Clustering via Mixtures of Unrestricted Skew-t
Sactor Analyzer Models
Analyze System Scalability with the Universal Scalability Law
US Maps Including Alaska and Hawaii
A Companion Package to the Book "U-Statistics, M-Estimation and
Resampling"
Fetch US Treasury yield curve data
Unicode Text Processing
Importing, Exporting and Converting Between Datasets and LaTeX
Construct, Evaluate and Plot Value and Utility Functions
IPEA Common Functions
Utilities for Multi-Label Learning
Tools for generating and handling of UUIDs
Unbinned weighted histogram analysis method (UWHAM)
Descriptive Statistics, Inference, Regression, and Plotting in
an Introductory Statistics Course
Embedded JavaScript Engine for R
Non-Domestic Vaccine Adverse Event Reporting System (VAERS)
Vaccine Data for Present
US Vaccine Adverse Event Reporting System (VAERS) Vaccine Data
for Present
Access to the 'Vagalume' API
Functional Input Validation
Validation Tools for Artificial Neural Networks
Data Validation Infrastructure
Validate JSON Against JSON Schemas
One-Sided Multivariate Testing Procedures for Rating Systems
Checking and Simplifying Validation Rule Sets
Velocity and Accuracy of the LOg-RAnk TEst
Results from the Virginia Lottery Draw Games
Genome Interval Arithmetic in R
Pricing of Variable Annuities
Identification and Statistical Analysis of Conserved Waters in
Proteins
VAR modelling: estimation, testing, and prediction
Variable Banding of Large Precision Matrices
Large-Scale Bayesian Variable Selection Using Variational
Methods
Variogram Diagnostics
Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Variance Estimation using Difference-Based Methods
Computes value at risk and expected shortfall for over 100
parametric distributions
Disease-Gene-Variant Relations Mining from the Public Databases
and Literature
Functions for Robust Variable Handling
Testing of Genotypic Variance Heterogeneity to Detect
Potentially Interacting SNP
Variable Descriptions
High-Dimensional Screening for Semiparametric Longitudinal
Regression
Variability Analysis in R
The Variance Gamma Distribution
Spatial Dependence Based on Empirical Variograms
Semi-Parametric Variance Regression
VAR Modelling
An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Sequential Forward Floating Selection using Jeffries-Matusita
Distance
Variable Selection for Model-Based Clustering of Continuous,
Count, Categorical or Mixed-Type Data Set with Missing Values
Variable Selection using Random Forests
Sign Restrictions, Bayesian, Vector Autoregression Models
Pricing a variance swap on an equity index
Tests for Error Autocorrelation and ARCH Errors in Vector
Autoregressive Models
Variational Bayes Discrete Mixture Model
Variational Bayes Latent Position Cluster Model for Networks
Variational Bayesian Mixture Models
Variational Bayes Spike Regression Regularized Linear Models
Variance Component Analysis
Visualizing Categorical Data
'vcd' Extensions and Additions
Manipulate and Visualize VCF Data
Variance-Covariance Matrices and Standard Errors
Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
VDA
Peptide Array Analysis Tools
Variance Dispersion Graphs and Fraction of Design Space Plots
Variance dispersion graphs and Fraction of design space plots
for response surface designs
Plots of Scaled Prediction Variances for Response Surface
Designs
Visual Regression Testing and Graphical Diffing
Visual Data Mining Tools
Statistical Methods for Designing and Analyzing a Calibration
Study
2D Cartesian Coordinate Transformation
Perform Set Operations on Vectors, Automatically Generating All
n-Wise Comparisons, and Create Markdown Output
like base::sets tools but keeps duplicate elements
Vector Analysis using Graphical and Analytical Methods in 2D
Vector analysis using graphical and analytical methods in 3D
Tools to Encode Visualizations with the 'Grammar of
Graphics'-Like 'Vega-Lite' 'Spec'
Community Ecology Package
Static and Dynamic 3D Plots for the 'vegan' Package
Fuzzy Clustering of Vegetation Data
Access Vegetation Databases and Treat Taxonomy
Jost Diversity Measures for Community Data
Handling Vegetation Data Sets
Vehicular Emissions Inventories
Fossil Analysis
Fast Raster Manipulation and Extraction
Functions to Embed Video in HTML
Draw Venn Diagrams
Generate High-Resolution Venn and Euler Plots
Venn and Euler Diagrams
Variable Selection for Heterogeneous Populations
Venn Diagrams in 2D and 3D
Weather Forecast Verification Utilities
Query and Install Specific Versions of Packages on CRAN
Vertex Enumeration of Polytopes
Creates Vertex Similarity Matrix for an Undirected Graph
Network Hierarchical Structure and Randomization
Store and Manage Arbitrarily Large Integers
Gradient and Vesselness Tools for Arrays and NIfTI Images
Tools for Venezuelan Environmental Data
Trust, but Verify
Linear Mixed Models - An Introduction with Applications in
Veterinary Research
Computation of v Values for U and Copula C(U, v)
Vector Generalized Linear and Additive Models
Data Supporting the 'VGAM' Package
Discrimination/Classification in very high dimension with linear
and quadratic rules
Vertical and Horizontal Inheritance Consistence Analysis
Video Comparison Tool
Convert Vietnam Provincial Codes
VIF Regression: A Fast Regression Algorithm For Large Data
Detecting Change-Points via VIFCP Method
Variational Bayesian Inference for Genome-Wide Regression
Visualization and Imputation of Missing Values
Visualization and Imputation of Missing Values - Graphical User
Interface
Statistical Inference of Vine Copulas
Multivariate Dependence Modeling with Vines
Combination of violin plot with mean and standard deviation
Violin plot
1-D Scatter Plots with Jitter Using Kernel Density Estimates
Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Default Color Maps from 'matplotlib'
Default Color Maps from 'matplotlib' (Lite Version)
Generation of Virtual Species Distributions
R Client for the VirusTotal API
Preliminary Data Visualisation
A Visual Tool for Behaviour Analysis
Network Visualization using 'vis.js' Library
Visualization of Regression Models
Pretty Timeline Creation
Statistical Methods for Visual Fields
Graph Probability Distributions with User Supplied Parameters
and Statistics
Visualisation of Clusters in Multivariate Data
A Tool for the Visualization of Vowel Variation
Variable Importance Testing Approaches
Fitting Routines for the Vitality Family of Mortality Models
Graphical Visualization Tools for Complex Observational Data
with Focus on Health Sciences
Access to VK API via R
Frequency Matrix Approach for Assessing Very Low Frequency
Variants in Sequence Records
Variable Length Markov Chains ('VLMC') Models
Variational Mode Decomposition
GUI Tools to Process, Analyze and Plot Fisheries Data
Finding Multiple-Objective Optimal Designs for the 4-Parameter
Logistic Model
Create and Manipulate Vocalisation Diagrams
Post Vortex Simulation Analysis
Example Data for R Package 'vortexR'
Generic Voss algorithm (random sequential additions)
Election Vote Counting
United States House and Senate Voting Cartogram Generators
Voter Transition Analysis
Vowel Manipulation, Normalization, and Plotting
Voxelwise Semiparametrics
Mass-Univariate Voxelwise Analysis of Medical Imaging Data
Metrics extraction of trees from T-LiDAR data
Create Visual Predictive Checks
Genome Scans to Accommodate and Target Genetic and Non-Genetic
Effects on Trait Variance in Test Crosses
Change Point Estimation for Regression with Varying Segments and
Heteroscedastic Variances
Generate 3D visualizations for data exploration on the web
Visualizing Risk Prediction Models
Variance Ratio tests and other tests for Martingale Difference
Hypothesis
Variable selection for clustering and classification
Variant Set Enrichment
Variable Selection Using Random Forests
A Collection of Tools for the Analysis of Remote Acoustic
Telemetry Data
A Statistically Sound 'data.frame' Processor/Conditioner
Visualization of Univariate Data for Comparison
Tools for Preprocessing Visual World Data
Useful functions for visual word recognition research
A Graphical Tool for Wavelet (Cross) Correlation and Wavelet
Multiple (Cross) Correlation Analysis
R Interface to W3C Markup Validation Services
Cost of Capital by Sector Data
Multivariate Weather-State Approach Conditionally Skew-Normal
Generator
A package to simulate constrained phenotypes under a disease
model H1
Create Waffle Chart Visualizations in R
Autocorrelation and Heteroskedasticity Correction in Fixed
Effect Panel Data Model
Generate Random Data Sets
Bayesian Regression with Time-Varying Coefficients
Random Walks in the Intersection of Hyperplanes and the
N-Simplex
Walk Score and Transit Score API
A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
The Wally Calibration Plot for Risk Prediction Models
Walmart Open API Wrapper
Robust Statistical Methods
Retrieve 'Magic' Attributes from Files and Directories
Streamline Bioacoustic Analysis
Weaning Age Reconstruction with Nitrogen Isotope Analysis
Mixed Effects Modeling with Warping for Functional Data Using
B-Spline
Urban Water and Sanitation Survey Dataset
Visualisation and analysis of output files of the hydrological
model WASIM
Actual Evapotranspiration with Energy Balance Models
Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic
Time Series Data
Waterfall Charts
Create Waterfall Charts using 'ggplot2' Simply
Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Spatial Watershed Aggregation and Spatial Drainage Network
Analysis
Wrap Around Time Series Graphics
Computes credible intervals for Bayesian wavelet shrinkage
Wavelet Deconvolution
Wave Function Representation of Real Distributions
Wavelet ARIMA Model
Computational Wavelet Analysis
Estimating Long Memory Parameter using Wavelet
A package of functions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Wavelet Routines for Global and Local Multiple Correlation
Calculate Fetch and Wave Energy
Data Estimation using Weighted Averages of Multiple Regressions
Basic wavelet routines for one-, two- and three-dimensional
signal processing
Wavelets Statistics and Transforms
Bootstrap Methods
Wild Binary Segmentation for Multiple Change-Point Detection
Programmatic Access to Data and Statistics from the World Bank
API
Multiple Change-Point Detection for Nonstationary Time Series
Weighted Cumulative Exposure Models
Weighted Correlations
Detection of QTL effects in a small mapping population
World Development Indicators (World Bank)
'Webdriver'/'Selenium' Binary Manager
Get Weather Data from the Web
Functions to Convert Between Weather Metrics
Tools for Handling and Scrapping Instant Weather Forecast Feeds
Chemical Information from the Web
The R Version of WebGestalt
3D Interactive Globes
Stubbing and Setting Expectations on 'HTTP' Requests
A New Format for Lossless and Lossy Image Compression
Tools for Reading Formatted Access Log Files
Access Domains and Search Popular Websites
Take Screenshots of Web Pages
A Wrapper Around 'WebTRIS' Traffic Flow API from Highways
England
Import Stata 'webuse' Datasets
Utility Functions for Developing Web Applications
Create graphics for the web from R
Weighted Effect Coding
Western Electric Company Rules (WECO) for Shewhart Control Chart
Weighted Estimated Equation (WEE) Approaches in Genetic
Case-Control Studies
Weighted Descriptive Statistics
Clustering of Weighted Data
Weighted Portmanteau Tests for Time Series Goodness-of-fit
Fast, Weighted ROC Curves
Weighted Scores Method for Regression Models with Dependent Data
Weighting for Covariate Balance in Observational Studies
Estimating Weight-Function Models for Publication Bias
Weighting and Weighted Statistics
Weight TAPS Data
A Hydraulics Package to Compute Open-Channel Flow over Weirs
Welch-James Statistic for Robust Hypothesis Testing under
Heterocedasticity and Non-Normality
Convert Between 'WKT' and 'GeoJSON'
A Wes Anderson Palette Generator
Weighted Linear Fixed Effects Regression Models for Causal
Inference
Weighted Fast Greedy Algorithm
Crossword, Scrabble and Anagram Solver
Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Weighted Correlation Network Analysis
Weighted Generalized Estimating Equations and Model Selection
Wilcoxon based gene set enrichment analysis
Evaluate Counterfactuals
Geolocalization of IATA Codes
{{mustache}} for R, logicless templating
White Matter Normalization for Magnetic Resonance Images using
Whitestripe
R Client for the World Health Organization API
Username, Full Name, Email Address, 'GitHub' Username of the
Current User
A 'Whoapi' API Client
High-Speed Processing of VCF, FASTA and Alignment Data
Utilities to Handle WKT Spatial Data
Weighting by Inverse Distance with Adaptive Least Squares for
Massive Space-Time Data
Penalized Regression with Polynomial Basis Expansions
'Htmlwidgets' in Responsive 'iframes'
Widen, Process, then Re-Tidy Data
Functions and datasets of the german WikiBook "GNU R"
API Client Library for 'Wikidata Query Service'
API Client Library for 'Wikidata'
Scrape Lake Metadata Tables from Wikipedia
R-Based Wikipedia Client
Public Subject Attention via Wikipedia Page View Statistics
A MediaWiki API Wrapper
A MediaWiki API Wrapper
Taxonomic Information from 'Wikipedia'
Wilcoxon-based variable selection in cross-validation
Templates for Data Frames
Calculate Indices of Dynamic Interaction for Wildlife Telemetry
Data
Best Hand Analysis for Poker Variants Including Wildcards
windex: Analysing convergent evolution using the Wheatsheaf
index
Genetic Algorithm for Wind Farm Layout Optimization
Advanced Windows Functions
World Input Output Database 1995-2011
Quick and Dirty Estimates for Wildlife Populations
Wild Scale-Enhanced Bootstrap
Run Code 'With' Temporarily Modified Global State
Convert Between Spatial Objects and Well-Known Binary Geometry
Converting Weekly Data to Monthly Data
Weighted Likelihood Estimation
Regression Analysis Based on Win Loss Endpoints
GUI Implementing Bayesian Working Memory Models
Discriminant Analysis Methods by Weight Mahalanobis Distance and
bayes
Wamser Misc: Reading Files by Tokens, Stateful Computations,
Utility Functions
Wavelet Leaders in Multifractal Analysis
Wavelet Methods for Time Series Analysis
Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Weighted Nearest Neighbor Imputation of Missing Values using
Selected Variables
Roll Call Analysis Software
Computes Weight of Evidence and Information Values
Supervised Weight of Evidence Binning of Numeric Variables and
Factors
Weight of Evidence Based Segmentation of a Variable
Spatiotemporal Boundary Detection Model for Areal Unit Data
105 Data Sets from "Introductory Econometrics: A Modern
Approach" by Jeffrey M. Wooldridge
Computing Word Alignment Using IBM Model 1 (and Symmetrization)
for a Given Parallel Corpus and Its Evaluation
Word Clouds
Create Word Cloud by 'htmlwidget'
Matches words in one file with words in another file
WordNet Interface
Classical word pools used in studies of learning and memory
Rendering Word Documents with R Inline Code
Distributional Semantic Models in R
Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Retriving Aphia Information from World Register of Marine
Species
World Register of Marine Species (WoRMS) Client
Weighted Predictiveness Curve
Permutation Tests
Weighted Piecewise Kernel Density Estimation
World Population Prospects 2008
World Population Prospects 2010
World Population Prospects 2012
World Population Prospects 2015
World Population Prospects 2017
Explorer of World Population Prospects
Exploring Water Quality Monitoring Data
Weighted Quantile Sum Regression
A Systematic Data Wrangling Idiom
Computes Pdf, Cdf, Quantile, Random Numbers and Provides
Estimation for any Univariate Wrapped Distributions
Wrap R Functions for Debugging and Parametric Programming
Interface to the ASSP Library
IRT Item-Person Map with 'ConQuest' Integration
Function for exporting data to SNNS pattern files
Export Data Frames to 'xlsx' Format
Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
A Collection of Robust Statistical Methods
Functions for working with Worldwide Reference System (WRS)
Data used by the wrspathrow package
Water Resources System Simulator
Weighted Random Sampling without Replacement
Benchmark and Correctness Data for Weighted Random Sampling
Without Replacement
Weighted Regression for Water Quality Evaluation in Tidal Waters
Who are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Weighted k-Means Clustering
Weighted Subspace Random Forest for Classification
Weighted SVM with boosting algorithm for improving accuracy
The W-Test on Genetic Interactions Testing
Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
An R Client for a Web Time-Series Service
R Wrapper for the 'Wufoo.com' - The Form Building Service
Scrape the 'Wunderground' API
Wegener Center Climate Uncertainty Explorer
Common Plots for Analysis
Image Tools for Automated Wood Identification
Functions and datasets for WWGbook
Weighted Win Loss Statistics and their Variances
eXtraction of ENTity
Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and Structure for
Batch Processing of Seasonal Adjustment
X12 - Graphical User Interface
Provide the 'x13ashtml' Seasonal Adjustment Binary
Presentation Ninja
Genomic Simulation of Purebred and Crossbred Populations
Extraction of Business Financial Information from 'XBRL'
Documents
Extensions of Exponential Random Graph Models
Common Infrastructure for Extensions of Exponential Random Graph
Models
Read and Write XES Files
Extreme Gradient Boosting
Interface to the XGobi and XGvis programs for graphical data
analysis
Exploring Genomic Relations for Enhanced Interpretation Through
Enrichment, Similarity, Network and Annotation Analysis
XHMM R scripts
X Chromosome Hardy-Weinberg Equilibrium
A Simple XML Tree Parser and Generator
Plotting ggplot2 Graphics in an XKCD Style
Color Names from the XKCD Color Survey
Get XKCD Comic Data
Excel Connector for R
JAR Dependencies for the XLConnect Package
High Dimensional Locally-Linear Mapping
'XLConnect' Wrapper
Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Package required POI jars for the xlsx package
Automatically Write Beautifully Formatted Cross
Tabulations/Contingency Tables to Excel
Extract Multiple Excel Files at Once
A Toolbox for Multivariate Meta-Analysis
Xiaobei's miscellaneous classes and functions
Tools for Parsing and Generating XML Within R and S-Plus
Parse XML
EasieR XML data collection
Parse Data of 'R' Code as an 'XML' Tree
Markov Random Fields for High-Throughput Genetics Data
Generate XMR Control Chart Data from Time-Series Data
Exact Goodness-of-Fit Test for Multinomial Data with Fixed
Probabilities
Tools for Analyzing Crossover Interference
Statistical Analysis of Textual Data
Diagnostics for Pharmacometric Models
Tools for Nonlinear Mixed-Effect Model Building and Diagnostics
Manipulating External Pointer
A Structure for Interfaces from R
X Ray Vision on your Datasets
Structured Interface to 'Julia'
Structured Interface to 'Python'
Statistical Quality Control Simulation
Assessing Functional Impact on Gene Expression of Mutations in
Cancer
Extensible Style-Sheet Language Transformations
The Chi-Square Periodogram
Cross-National Data on Sub-National Violence
Export Tables to LaTeX or HTML
Crystallization Toolset
Headers for the 'xtensor' Library
Terminal Text Formatting Using Escape Sequences
Accessing Environmental Data from ERD's ERDDAP Server
eXtensible Time Series
Calculates Credit Risk Valuation Adjustments
Extrema-Weighted Feature Extraction
Practical Item Response Theory and Computer-Based Testing in R
A Method for Creating Xylophone-Like Frequency Density Plots
The 'xyz' Algorithm for Fast Interaction Search in
High-Dimensional Data
Yet Another Canonical Correlation Analysis Package
Nearest Neighbor Observation Imputation and Evaluation Tools
A Simple Wrapper for the k-Means Library Yakmo
Data exploration tools from Yale University
Methods to Convert R Data to YAML and Back
Tidy Characterizations of Model Performance
A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
String Functions for Compact and Expressive Code
Yield curve or zero-coupon prices interpolation and
extrapolation
Cryptic Transcription Analysis in Yeast
Use and if Needed Install Packages from CRAN, BioConductor, CRAN
Archive, and GitHub
Ask a Custom Yes-No Question
Interpreting Regression Effects
R Binder for the Yhat API
Modelling and estimation of the yield curve
K-means using a target variable
Analyze Cricket Performances Based on Data from Cricsheet
Interim Monitoring Using Adaptively Weighted Log-Rank Test in
Clinical Trials
Plant Architectural Analysis with Yplant and QuasiMC
The Short-Term and Long-Term Hazard Ratio Model for Survival
Data
A Simple Approach to Scale Gene Expression Data Derived from
Different Platforms for Integrated Analyses
The YUIMA Project Package for SDEs
A Graphical User Interface for the 'yuima' Package
R Bindings for Yummly API
Treatment of Zeros and Nondetects in Compositional Data Sets
Multiple, Unpacking, and Destructuring Assignment
ZeBook Working with dynamic models for agriculture and
environment
Local Association Measures
Everyone's Statistical Software
Zelig Choice Models
Zelig Ecological Inference Models
Easily Install and Load Stable Zelig Packages
Zendesk API Wrapper
Zigzag Expanded Navigation Plots
Functions to Compute Compositional Turnover Using Zeta Diversity
Zoom-Focus Algorithm
Calculate the Compressibility Factor 'z' for Hydrocarbon Gases
Differential Abundance Analysis for Metagenomic Data via
Zero-Inflated Beta Regression
Bayesian Inference for Zero-Inflated Count Models
R Interface to Zillow Real Estate and Mortgage Data API
Zero-Inflated Models for Count Time Series with Excess Zeros
Cross-Platform 'zip' Compression
U.S. ZIP Code database for geocoding
Statistical Models for Word Frequency Distributions
Zero-Inflated Poisson Hidden (Semi-)Markov Models
Seismic Reflection and Scattering Coefficients
Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
ZOIP Distribution, ZOIP Regression, ZOIP Mixed Regression
Utilities for Zonation Spatial Conservation Prioritization
Software
S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Analytical Tools for Zooarchaeological Data
Interactive Analytical Tools for Zooarchaeological Data
'zoo' Objects with Column Attributes
Analysis of numerical zooplankton images
A spatial data visualization tool
Dynamic Plots for Time Series Forecasting
Integer Sequence Generator
R Bindings to the 'Zstandard' Compression Library
Zebra-Striped Tables in LaTeX and HTML Formats
Functions to Import Data from 'z-Tree' into R
Run a Ztype Game Loaded with R Functions
Zhang + Yue-Pilon trends package
Bootstrap Functions (Originally by Angelo Canty for S)
Functions for Classification
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Code Analysis Tools for R
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Trellis Graphics for R
Support Functions and Datasets for Venables and Ripley's MASS
Sparse and Dense Matrix Classes and Methods
Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Linear and Nonlinear Mixed Effects Models
Feed-Forward Neural Networks and Multinomial Log-Linear Models
Recursive Partitioning and Regression Trees
Functions for Kriging and Point Pattern Analysis
Survival Analysis