* using log directory 'd:/RCompile/CRANincoming/R-devel/miic.Rcheck'
* using R Under development (unstable) (2024-09-12 r87143 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'miic/DESCRIPTION' ... OK
* this is package 'miic' version '2.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [10s] NOTE
Maintainer: 'Franck Simon <franck.simon@curie.fr>'

New maintainer:
  Franck Simon <franck.simon@curie.fr>
Old maintainer(s):
  Vincent Cabeli <vincent.cabeli@curie.fr>

Possibly misspelled words in DESCRIPTION:
  Affeldt (74:5)
  CRAN (75:48)
  CausalXtract (63:63)
  Comput (71:20, 73:24)
  Dantas (69:13)
  MIIC (48:14, 57:5, 59:54, 61:18, 64:45)
  NeurIPS (70:20, 72:16)
  Ribeiro (69:5)
  UAI (74:21)
  eLife (68:19)
  iMIIC (57:21)
  iScience (69:28)
  interpretable (56:67)
  tMIIC (60:20)

The Description field should not start with the package name,
  'This package' or similar.

Found the following URLs which should use \doi (with the DOI name only):
  File 'computeMutualInfo.Rd':
    https://doi.org/10.1371/journal.pcbi.1007866
  File 'computeThreePointInfo.Rd':
    https://doi.org/10.1371/journal.pcbi.1007866
  File 'discretizeMutual.Rd':
    https://doi.org/10.1371/journal.pcbi.1007866
  File 'miic.Rd':
    https://doi.org/10.1016/j.isci.2024.109736
    https://doi.org/10.1371/journal.pcbi.1007866
    https://doi.org/10.1371/journal.pcbi.1005662
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'miic' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking C++ specification ... NOTE
  Specified C++14: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs