* using log directory ‘/srv/hornik/tmp/CRAN_pretest/miic.Rcheck’
* using R Under development (unstable) (2024-09-13 r87144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘miic/DESCRIPTION’ ... OK
* this is package ‘miic’ version ‘2.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Franck Simon <franck.simon@curie.fr>’

New maintainer:
  Franck Simon <franck.simon@curie.fr>
Old maintainer(s):
  Vincent Cabeli <vincent.cabeli@curie.fr>

Possibly misspelled words in DESCRIPTION:
  Affeldt (74:5)
  CausalXtract (63:63)
  Comput (71:20, 73:24)
  Dantas (69:13)
  MIIC (48:14, 57:5, 59:54, 61:18, 64:45)
  NeurIPS (70:20, 72:16)
  Ribeiro (69:5)
  UAI (74:21)
  eLife (68:19)
  iMIIC (57:21)
  iScience (69:28)
  tMIIC (60:20)

The Description field should not start with the package name,
  'This package' or similar.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘computeMutualInfo.Rd’:
    https://doi.org/10.1371/journal.pcbi.1007866
  File ‘computeThreePointInfo.Rd’:
    https://doi.org/10.1371/journal.pcbi.1007866
  File ‘discretizeMutual.Rd’:
    https://doi.org/10.1371/journal.pcbi.1007866
  File ‘miic.Rd’:
    https://doi.org/10.1016/j.isci.2024.109736
    https://doi.org/10.1371/journal.pcbi.1007866
    https://doi.org/10.1371/journal.pcbi.1005662
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘miic’ can be installed ... [33s/33s] OK
* used C++ compiler: ‘Debian clang version 18.1.8 (9)’
* checking C++ specification ... NOTE
  Specified C++14: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs