* using log directory ‘/srv/hornik/tmp/CRAN/migraph.Rcheck’
* using R Under development (unstable) (2024-01-23 r85822)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘migraph/DESCRIPTION’ ... OK
* this is package ‘migraph’ version ‘1.3.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/9s] NOTE
Maintainer: ‘James Hollway <james.hollway@graduateinstitute.ch>’

Found the following (possibly) invalid URLs:
  URL: https://github.com/snlab-ch/migraph (moved to https://github.com/stocnet/migraph)
    From: inst/CITATION
    Status: 301
    Message: Moved Permanently
  URL: https://www.codefactor.io/repository/github/stocnet/migraph
    From: README.md
    Status: 404
    Message: Not Found
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘migraph’ can be installed ... [5s/5s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
Missing or unexported objects:
  ‘manynet::is_list’ ‘manynet::node_is_cutpoint’
  ‘manynet::node_is_infected’ ‘manynet::tie_is_bridge’
  ‘manynet::tie_is_loop’ ‘manynet::tie_is_multiple’
  ‘manynet::tie_is_reciprocated’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [5s/5s] ERROR
Running examples in ‘migraph-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: heterogeneity
> ### Title: Measures of network diversity
> ### Aliases: heterogeneity network_richness node_richness network_diversity
> ###   node_diversity network_heterophily node_heterophily
> ###   network_assortativity network_spatial
> 
> ### ** Examples
> 
> network_richness(mpn_bristol)
[1] 3
> node_richness(mpn_bristol, "type")
  `101` `102` `103` `104` `105` `106` `107` `108` `109` `110` `111` `112` `113`
1     1     2     2     2     2     2     2     2     2     2     2     2     2
# ... with 137 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.
  AddReAg AfrInit AvonBat OrganicCoop Wildlife BACEN BangladAss Barnardos
1       2       2       1           2        2     2          2         2
# ... with 106 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.> marvel_friends <- manynet::to_unsigned(manynet::ison_marvel_relationships, "positive")
> network_diversity(marvel_friends, "Gender")
[1] 0.306
> network_diversity(marvel_friends, "Attractive")
[1] 0.35
> network_diversity(marvel_friends, "Gender", "Rich")
[1] 0.337 0.165
> node_diversity(marvel_friends, "Gender")
  Abomination `Ant-Man` Apocalypse Beast `Black Panther` `Black Widow` Blade
1           0      0.48          0 0.363            0.34         0.337     0
# ... with 46 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.> node_diversity(marvel_friends, "Attractive")
  Abomination `Ant-Man` Apocalypse Beast `Black Panther` `Black Widow` Blade
1           0      0.32          0 0.172           0.159         0.133     0
# ... with 46 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.> network_heterophily(marvel_friends, "Gender")
[1] -0.285
> network_heterophily(marvel_friends, "Attractive")
[1] -0.632
> node_heterophily(marvel_friends, "Gender")
  Abomination `Ant-Man` Apocalypse Beast `Black Panther` `Black Widow` Blade
1         NaN       0.5         -1  -0.5          -0.545         0.692    -1
# ... with 46 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.> node_heterophily(marvel_friends, "Attractive")
  Abomination `Ant-Man` Apocalypse Beast `Black Panther` `Black Widow` Blade
1         NaN      -0.5         -1  -0.8          -0.818        -0.846    -1
# ... with 46 more values from this nodeset unprinted. Use `print(..., n = Inf)` to print all values.> network_assortativity(mpn_elite_mex)
[1] -0.176
> network_spatial(ison_lawfirm, "age")
Error in network_spatial(ison_lawfirm, "age") : is.numeric(x) is not TRUE
Calls: network_spatial -> stopifnot
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [8s/8s] OK
  Running ‘testthat.R’ [8s/8s]
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE