R Under development (unstable) (2024-05-07 r86527 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(microdiluteR)
> 
> test_check("microdiluteR")
Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter treatment of  row A: Enter treatment of  row B: Enter treatment of  row C: Enter treatment of  row D: Enter treatment of  row E: Enter treatment of  row F: Enter treatment of  row G: Enter treatment of  row H: Enter treatment of  column 1: Enter treatment of  column 2: Enter treatment of  column 3: Enter treatment of  column 4: Enter treatment of  column 5: Enter treatment of  column 6: Enter treatment of  column 7: Enter treatment of  column 8: Enter treatment of  column 9: Enter treatment of  column 10: Enter treatment of  column 11: Enter treatment of  column 12: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter experiment identifier for exp1: Enter experiment identifier for exp1: Enter experiment identifier for exp2: Enter group name for grp1: Enter group name for grp1: Enter group name for grp2: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter threshold for distinguishing valid from invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of  row A: Enter treatment of  row B: Enter treatment of  row C: Enter treatment of  row D: Enter treatment of  row E: Enter treatment of  row F: Enter treatment of  row G: Enter treatment of  row H: Enter treatment of  column 1: Enter treatment of  column 2: Enter treatment of  column 3: Enter treatment of  column 4: Enter treatment of  column 5: Enter treatment of  column 6: Enter treatment of  column 7: Enter treatment of  column 8: Enter treatment of  column 9: Enter treatment of  column 10: Enter treatment of  column 11: Enter treatment of  column 12: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: All groups have monotonic behavior. Returning original input data.
Do you want to see all plots? (y/n): Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Continuing without changes for case: b 
Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Continuing without changes for case: c 
Non-monotonic groups detected: b, c 
Returning subset of data containing non-monotonic groups.
Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Continuing without changes for case: b 
Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Continuing without changes for case: c 
Non-monotonic groups detected: b, c 
Returning subset of data containing non-monotonic groups.
Non-monotonic well positions detected for case: A.b . Do you want to set this group as valid? (y/n): Continuing without changes for case: A.b 
Non-monotonic well positions detected for case: B.b . Do you want to set this group as valid? (y/n): Continuing without changes for case: B.b 
Non-monotonic well positions detected for case: A.c . Do you want to set this group as valid? (y/n): Continuing without changes for case: A.c 
Non-monotonic well positions detected for case: B.c . Do you want to set this group as valid? (y/n): Continuing without changes for case: B.c 
Non-monotonic groups detected: A.b, B.b, A.c, B.c 
Returning subset of data containing non-monotonic groups.
Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of  column 1: Enter treatment of  column 2: Enter treatment of  column 3: Enter treatment of  column 4: Enter treatment of  column 5: Enter treatment of  column 6: Enter treatment of  column 7: Enter treatment of  column 8: Enter treatment of  column 9: Enter treatment of  column 10: Enter treatment of  column 11: Enter treatment of  column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of  row A: Enter treatment of  row B: Enter treatment of  row C: Enter treatment of  row D: Enter treatment of  row E: Enter treatment of  row F: Enter treatment of  row G: Enter treatment of  row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of  row A: Enter treatment of  row B: Enter treatment of  row C: Enter treatment of  row D: Enter treatment of  row E: Enter treatment of  row F: Enter treatment of  row G: Enter treatment of  row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of  column 1: Enter treatment of  column 2: Enter treatment of  column 3: Enter treatment of  column 4: Enter treatment of  column 5: Enter treatment of  column 6: Enter treatment of  column 7: Enter treatment of  column 8: Enter treatment of  column 9: Enter treatment of  column 10: Enter treatment of  column 11: Enter treatment of  column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of  column 1: Enter treatment of  column 2: Enter treatment of  column 3: Enter treatment of  column 4: Enter treatment of  column 5: Enter treatment of  column 6: Enter treatment of  column 7: Enter treatment of  column 8: Enter treatment of  column 9: Enter treatment of  column 10: Enter treatment of  column 11: Enter treatment of  column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: [ FAIL 0 | WARN 1 | SKIP 0 | PASS 132 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 132 ]
> 
> proc.time()
   user  system elapsed 
   5.75    0.65    6.39