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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(microdiluteR) > > test_check("microdiluteR") Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter experiment identifier for exp1: Enter experiment identifier for exp1: Enter experiment identifier for exp2: Enter group name for grp1: Enter group name for grp1: Enter group name for grp2: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter threshold for distinguishing valid from invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: All groups have monotonic behavior. Returning original input data. Do you want to see all plots? (y/n): Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Continuing without changes for case: b Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Continuing without changes for case: c Non-monotonic groups detected: b, c Returning subset of data containing non-monotonic groups. Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Continuing without changes for case: b Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Continuing without changes for case: c Non-monotonic groups detected: b, c Returning subset of data containing non-monotonic groups. Non-monotonic well positions detected for case: A.b . Do you want to set this group as valid? (y/n): Continuing without changes for case: A.b Non-monotonic well positions detected for case: B.b . Do you want to set this group as valid? (y/n): Continuing without changes for case: B.b Non-monotonic well positions detected for case: A.c . Do you want to set this group as valid? (y/n): Continuing without changes for case: A.c Non-monotonic well positions detected for case: B.c . Do you want to set this group as valid? (y/n): Continuing without changes for case: B.c Non-monotonic groups detected: A.b, B.b, A.c, B.c Returning subset of data containing non-monotonic groups. Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: [ FAIL 1 | WARN 0 | SKIP 0 | PASS 121 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_growth_performance.R:30:3'): plot_growth_performance() produces expected output ── Error in `sym(y_var) < 0`: comparison (<) is not possible for language types Backtrace: ▆ 1. └─microdiluteR::plot_growth_performance(input_data = test_summarized_data) at test-plot_growth_performance.R:30:3 2. ├─ggplot2::geom_text(...) 3. │ ├─ggplot2::layer(...) 4. │ └─rlang::list2(...) 5. └─base::ifelse(!!sym(y_var) < 0, -0.5, 0.5) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 121 ] Error: Test failures Execution halted