* using log directory ‘/srv/hornik/tmp/CRAN/micemd.Rcheck’ * using R Under development (unstable) (2023-11-15 r85536) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.4 (1) Debian flang-new version 17.0.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘micemd/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘micemd’ version ‘1.10.0’ * checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers Maintainer: ‘Vincent Audigier ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘micemd’ can be installed ... [11s/11s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/3s] OK * checking whether the package can be loaded with stated dependencies ... [3s/3s] OK * checking whether the package can be unloaded cleanly ... [3s/3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK * checking whether the namespace can be unloaded cleanly ... [3s/3s] OK * checking loading without being on the library search path ... [3s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/16s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) CHEM97Na.Rd:33: Lost braces 33 | Resche-Rigon, M., White, I. R., Bartlett, J., Peters, S., Thompson, S., and on behalf of the PROG-IMT Study Group (2013). Multiple imputation for handling systematically missing confounders in meta-analysis of individual participant data. Statistics in Medicine, 32(28):4890{4905}. \doi{10.1002/sim.5894} | ^ checkRd: (-1) IPDNa.Rd:36: Lost braces 36 | Resche-Rigon, M., White, I. R., Bartlett, J., Peters, S., Thompson, S., and on behalf of the PROG-IMT Study Group (2013). Multiple imputation for handling systematically missing confounders in meta-analysis of individual participant data. Statistics in Medicine, 32(28):4890{4905}. \doi{10.1002/sim.5894} | ^ checkRd: (-1) find.defaultMethod.Rd:64: Lost braces 64 | Jolani, S., Debray, T. P. A., Koffijberg, H., van Buuren, S., and Moons, K. G. M. (2015). Imputation of systematically missing predictors in an individual participant data meta-analysis: a generalized approach using MICE. Statistics in Medicine, 34(11):1841{1863}. \doi{10.1002/sim.6451} | ^ checkRd: (-1) find.defaultMethod.Rd:66: Lost braces 66 | Quartagno, M. and Carpenter, J. R. (2016). Multiple imputation for IPD meta-analysis: allowing for heterogeneity and studies with missing covariates. Statistics in Medicine, 35(17):2938{2954}. \doi{10.1002/sim.6837} | ^ checkRd: (-1) mice.impute.2l.2stage.heckman.Rd:28: Lost braces; missing escapes or markup? 28 | Type of the variable in the prediction model, which can be one of the following: {No predictor (0), Cluster variable (-2), Predictor in both the outcome and selection equation (2), Predictor only in the selection equation (-3), Predictor only in the outcome equation (-4).} In this method all predictors are considered random variables that also included the fixed effect.} | ^ checkRd: (-1) mice.impute.2l.glm.bin.Rd:40: Lost braces 40 | Jolani, S., Debray, T. P. A., Koffijberg, H., van Buuren, S., and Moons, K. G. M. (2015). Imputation of systematically missing predictors in an individual participant data meta-analysis: a generalized approach using MICE. Statistics in Medicine, 34(11):1841{1863}. \doi{10.1002/sim.6451} | ^ checkRd: (-1) mice.impute.2l.glm.norm.Rd:41: Lost braces 41 | Jolani, S., Debray, T. P. A., Koffijberg, H., van Buuren, S., and Moons, K. G. M. (2015). Imputation of systematically missing predictors in an individual participant data meta-analysis: a generalized approach using MICE. Statistics in Medicine, 34(11):1841{1863}. \doi{10.1002/sim.6451} | ^ checkRd: (-1) mice.impute.2l.glm.pois.Rd:40: Lost braces 40 | Jolani, S., Debray, T. P. A., Koffijberg, H., van Buuren, S., and Moons, K. G. M. (2015). Imputation of systematically missing predictors in an individual participant data meta-analysis: a generalized approach using MICE. Statistics in Medicine, 34(11):1841{1863}. \doi{10.1002/sim.6451} | ^ checkRd: (-1) micemd-package.Rd:22: Lost braces 22 | Jolani, S., Debray, T. P. A., Koffijberg, H., van Buuren, S., and Moons, K. G. M. (2015). Imputation of systematically missing predictors in an individual participant data meta-analysis: a generalized approach using MICE. Statistics in Medicine, 34(11):1841{1863}. \doi{10.1002/sim.6451} | ^ checkRd: (-1) micemd-package.Rd:26: Lost braces 26 | Quartagno, M. and Carpenter, J. R. (2016). Multiple imputation for IPD meta-analysis: allowing for heterogeneity and studies with missing covariates. Statistics in Medicine, 35(17):2938{ 2954}. \doi{10.1002/sim.6837} | ^ checkRd: (-1) micemd-package.Rd:30: Lost braces 30 | Resche-Rigon, M., White, I. R., Bartlett, J., Peters, S., Thompson, S., and on behalf of the PROG-IMT Study Group (2013). Multiple imputation for handling systematically missing confounders in meta-analysis of individual participant data. Statistics in Medicine, 32(28):4890{4905}. \doi{10.1002/sim.5894} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [8s/8s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE