Package: galamm
Check: tests
New result: ERROR
    Running ‘testthat.R’ [37s/38s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > #' @srrstats {G5.2} All errors and warnings are tested.
    > #' @srrstats {G5.2a} Every message produced within R code by stop(),
    > #'   warning(), or message(), is unique.
    > #' @srrstats {G5.2b} All stop(), warning(), and message() calls are tested,
    > #'   as can be seen in the CodeCov report on GitHub.
    > #' @srrstats {G5.3} Tests have explicit expectations about return objects.
    > #' @srrstats {G5.4a} These are new methods, but they have been used in the
    > #'   paper Sørensen, Fjell, and Walhovd (2023), in which extensive simulation
    > #'   studies confirmed the correctness of the implementation. Furthermore, the
    > #'   simulated datasets, which are documented in "R/data.R" and exported, have
    > #'   known ground truth and we confirm in the vignettes that the obtained
    > #'   estimates are close to the true values.
    > #' @srrstats {G5.4b} Wherever there is overlapping functionality, results from
    > #'   galamm() have been confirmed to be identical to those of lme4::lmer() for
    > #'   linear mixed models, to those of lme4::glmer() for generalized linear
    > #'   mixed models with binomial or Poisson responses, to those of
    > #'   nlme::lme() for linear mixed models with heteroscedastic residuals, and
    > #'   to those of PLmixed::PLmixed() for linear mixed models with factor
    > #'   structures and generalized linear mixed models with factor structures.
    > #' @srrstats {G5.5} Random seed is set when simulating data, but the
    > #'   algorithms are determinstic, and hence don't depend on random numbers.
    > #' @srrstats {G5.6} Implemented in the tests, both through data simulated
    > #'   for this package, and through simulated data from PLmixed and lme4.
    > #' @srrstats {G5.6a} Tolerance in testthat() set to relatively high values,
    > #'   since the outcome is platform dependent.
    > #'
    > #' @noRd
    > NULL
    NULL
    > 
    > library(testthat)
    > library(galamm)
    > 
    > test_check("galamm")
    [ FAIL 1 | WARN 0 | SKIP 12 | PASS 185 ]
    
    ══ Skipped tests (12) ══════════════════════════════════════════════════════════
    • On CRAN (9): 'test-galamm-glmm.R:25:3', 'test-galamm-heteroscedastic.R:8:3',
      'test-galamm-latent-covariates-interaction.R:18:3',
      'test-galamm-latent-covariates-interaction.R:69:3', 'test-galamm-lmm.R:94:3',
      'test-galamm-lmm.R:173:3', 'test-galamm-mixed-resp.R:203:3',
      'test-galamm-mixed-resp.R:216:3', 'test-galamm-setup.R:341:3'
    • Skipping extended tests (3): 'test-galamm-lmm.R:317:3',
      'test-parameter-recovery.R:116:3', 'test-parameter-recovery.R:133:5'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-galamm-semiparametric.R:19:3'): galamm reproduces gamm4 ────────
    Error in `if (!is.na(x$sp.criterion) && !is.null(x$method) && !(x$method %in% 
        c("PQL", "lme.ML", "lme.REML"))) cat(x$method, " = ", formatC(x$sp.criterion, 
        digits = 5), sep = "")`: missing value where TRUE/FALSE needed
    Backtrace:
        ▆
     1. └─testthat::expect_snapshot(print(summary(mod$gam), digits = 2)) at test-galamm-semiparametric.R:19:3
     2.   └─rlang::cnd_signal(state$error)
    
    [ FAIL 1 | WARN 0 | SKIP 12 | PASS 185 ]
    Error: Test failures
    Execution halted

Package: gamlss.spatial
Check: whether package can be installed
New result: WARNING
  Found the following significant warnings:
    Warning: replacing previous import ‘gamlss::lp’ by ‘mgcv::lp’ when loading ‘gamlss.spatial’

Package: semsfa
Check: whether package can be installed
New result: WARNING
  Found the following significant warnings:
    Warning: replacing previous import ‘mgcv::lp’ by ‘gamlss::lp’ when loading ‘semsfa’

Package: serosv
Check: whether package can be installed
New result: WARNING
  Found the following significant warnings:
    Warning: replacing previous import ‘locfit::lp’ by ‘mgcv::lp’ when loading ‘serosv’
    Warning: replacing previous import ‘mgcv::lp’ by ‘locfit::lp’ when loading ‘serosv’
  See ‘/home/hornik/tmp/CRAN_recheck/serosv.Rcheck/00install.out’ for details.
  Used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’