context("binreg simple-icpw versus prodlim") test_that("binreg-cif", { data(bmt) bmt$time <- bmt$time+runif(nrow(bmt))*0.001 out <- binreg(Event(time,cause)~-1+factor(platelet),bmt,time=50,cens.model=~strata(platelet)) summary(out) pp <- predict(out,data.frame(platelet=0:1,tcell=0:1)) cif1 <- cif(Event(time,cause)~strata(platelet),bmt) cifs <- cbind(cif1$cumhaz[,1],vecAllStrata(cif1$cumhaz[,2],cif1$strata,cif1$nstrata)) pcif50 <- cpred(cifs,50)[,2] se.cifs <- cbind(cif1$cumhaz[,1],vecAllStrata(cif1$se.cumhaz[,2],cif1$strata,cif1$nstrata)) se.pcif50 <- cpred(se.cifs,50)[,2] ## estimate (same) and standard errors (close) expect_true( ((sum(abs(pcif50-pp[,1])))<0.0001) & (sum(abs(pp[,2]-cpred(se.cifs,50)[,2])) < 0.0002)) })