* installing *source* package 'mets' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' using Fortran compiler: 'GNU Fortran (GCC) 12.3.0' using C++ compiler: 'g++.exe (GCC) 12.3.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from ../inst/include/mets_RcppExports.h:7, from ../inst/include/mets.h:7, from RcppExports.cpp:4: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c aalenfrailty.cpp -o aalenfrailty.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from aalenfrailty.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c apply.cpp -o apply.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from apply.cpp:4: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binomial-twostage.cpp -o binomial-twostage.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from binomial-twostage.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c biprobit.cpp -o biprobit.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from mvn.h:4, from biprobit.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c claytonoakes.cpp -o claytonoakes.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from claytonoakes.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c clusterindex.cpp -o clusterindex.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from clusterindex.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cor.cpp -o cor.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from cor.cpp:2: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastcox.cpp -o fastcox.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from fastcox.cpp:3: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} fastcox.cpp: In function 'SEXPREC* revcumsum2stratafdNR(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': fastcox.cpp:598:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 598 | for (unsigned i=0; i0.1) && (i>=1)&& (ss=0)) | ^~ fastcox.cpp:972:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 972 | lagressum(i)=tmpsum(ss); | ^~~~~~~~~ fastcox.cpp: In function 'arma::mat lower2fullXX(arma::rowvec, int)': fastcox.cpp:1456:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1456 | for (unsigned i=0; i::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} mvn.cpp: In function 'arma::vec loglikmvn(arma::mat&, arma::mat&, arma::uvec&, arma::mat&, arma::mat&, arma::mat&, arma::mat&, arma::mat&, double)': mvn.cpp:297:20: warning: unused variable 'logdetS' [-Wunused-variable] 297 | double logdetS0, logdetS, sign; | ^~~~~~~ mvn.cpp:297:29: warning: unused variable 'sign' [-Wunused-variable] 297 | double logdetS0, logdetS, sign; | ^~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pch.cpp -o pch.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from pch.cpp:3: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c prop-odd.cpp -o prop-odd.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from prop-odd.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c randomF77.c -o randomF77.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sim-tools.cpp -o sim-tools.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from sim-tools.cpp:3: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} sim-tools.cpp: In function 'arma::uvec approx(const arma::mat&, const arma::mat&, unsigned int)': sim-tools.cpp:17:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 17 | for (int i=0; i::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} survival-twostage.cpp: In function 'SEXPREC* twostageloglikeRV(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': survival-twostage.cpp:2077:57: warning: variable 'sdj' set but not used [-Wunused-but-set-variable] 2077 | double dl1,dl2,ll1,ll2,ll=1,Li,Lk,diff=0,loglikecont=0,sdj=0; | ^~~ survival-twostage.cpp: In function 'SEXPREC* survivalloglikeRVpairs(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': survival-twostage.cpp:2762:21: warning: variable 'thetak' set but not used [-Wunused-but-set-variable] 2762 | double llt=1,ssf=0,thetak=0; | ^~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:188: In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]', inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:465:46, inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:489:40, inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:744:34, inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap_end.h:30:38, inlined from 'Rcpp::internal::generic_name_proxy& Rcpp::internal::generic_name_proxy::operator=(const T&) [with T = double; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/vector/proxy.h:157:11, inlined from 'SEXPREC* claytonoakesbinRV(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)' at survival-twostage.cpp:1800:16: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'like' may be used uninitialized [-Wmaybe-uninitialized] 442 | r_vector_start(x)[0] = object; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ survival-twostage.cpp: In function 'SEXPREC* claytonoakesbinRV(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': survival-twostage.cpp:1786:16: note: 'like' was declared here 1786 | double like; | ^~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/mvtnorm/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tools.cpp -o tools.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from tools.h:4, from tools.cpp:3: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c tvpack.f -o tvpack.o g++ -std=gnu++17 -shared -s -static-libgcc -o mets.dll tmp.def RcppExports.o aalenfrailty.o apply.o binomial-twostage.o biprobit.o claytonoakes.o clusterindex.o cor.o fastcox.o init.o mvn.o pch.o prop-odd.o randomF77.o sim-tools.o survival-twostage.o tools.o tvpack.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-mets/00new/mets/libs/x64 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mets)