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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(metamorphr) > > test_check("metamorphr") `impute_bpca` output: `impute_bpca` output: `impute_bpca` output: `impute_bpca` output: Cluster size 2308 broken into 1247 1061 Done cluster 1247 Done cluster 1061 Cluster size 2308 broken into 1406 902 Done cluster 1406 Done cluster 902 Cluster size 2308 broken into 1247 1061 Done cluster 1247 Done cluster 1061 Finished iteration 2. Finished iteration 3. Successfully ran 3 iterations. Finished iteration 1. Finished iteration 2. Finished iteration 3. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 0 % missing values (NA): 0 out of 110. Finished iteration 1. Finished iteration 2. Finished iteration 3. Finished iteration 4. Finished iteration 5. Finished iteration 6. Finished iteration 1. nipals calculated PCA Importance of component(s): PC1 PC2 R2 0.4315 0.2422 Cumulative R2 0.4315 0.6736 10 Variables 11 Samples 33 NAs ( 30 %) 2 Calculated component(s) Data was mean centered before running PCA Data was NOT scaled before running PCA Scores structure: [1] 11 2 Loadings structure: [1] 10 2 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 30 % missing values (NA): 33 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more # 5 more features # Use the n_features_max argument to see more 30 % missing values (NA): 33 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 30 % missing values (NA): 33 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more Replicates detected: 1...3 1 Batches: 1 30 % missing values (NA): 33 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 4 Groups: control, treatment, QC, blank 1 Batches: 1 30 % missing values (NA): 33 out of 110. 11 Samples: Sample1, Sample2, Sample3, Sample4, Sample5 # 6 more samples # Use the n_samples_max argument to see more 10 Features: 161.10519 Da 26.98 s, 276.13647 Da 27.28 s, 304.24023 Da 32.86 s, 417.23236 Da 60.08 s, 104.10753 Da 170.31 s # 5 more features # Use the n_features_max argument to see more 4 Groups: control, treatment, QC, blank Replicates detected: 1...3 30 % missing values (NA): 33 out of 110. [ FAIL 0 | WARN 0 | SKIP 0 | PASS 364 ] > > proc.time() user system elapsed 45.64 4.10 49.56