R Under development (unstable) (2025-11-21 r89046 ucrt) -- "Unsuffered Consequences"
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> library(medicalcoder)
> source("utilities.R")
> ################################################################################
> # testing assert_scaler_logical
> #
> # Tests:
> #
> #   t01:
> #     a: verify the method is in the namespace
> #     b: verify the method is not exported
> #
> #   t02: verify an error is thrown when `full.codes` is not a length-1
> #        non-missing logical when calling comorbidities()
> #
> #   t03: verify an error is thrown when `compact.codes` is not a length-1
> #        non-missing logical when calling comorbidities()
> #
> #   t04: verify an error is thrown when subconditions is not a length-1
> #        non-missing logical (using pccc_v3.1 as the method to avoid warning
> #        messages) when calling comorbidities()
> #
> #   t05: verify an error is thrown when with.descriptions is not a length-1
> #        non-missing logical when calling get_icd_codes()
> #
> #   t06: verify an error is thrown when with.hierarchy is not a length-1
> #        non-missing logical when calling get_icd_codes()
> 
> stopifnot(
+   t01a = "assert_scalar_logical" %in% ls(getNamespace("medicalcoder"), all.names = TRUE),
+   t01b = !("assert_scalar_logical" %in% getNamespaceExports("medicalcoder"))
+ )
> 
> common_args <- list(data = mdcr, method = "pccc_v3.1", icd.codes = "code", poa = 1L)
> 
> t02a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = TRUE))))
> t02b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = FALSE))))
> t02c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = logical(0)))))
> t02d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = NA))))
> t02e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = "yes"))))
> t02f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = 3))))
> 
> t03a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = TRUE))))
> t03b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = FALSE))))
> t03c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = logical(0)))))
> t03d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = NA))))
> t03e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = "yes"))))
> t03f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = 3))))
> 
> t04a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = TRUE))))
> t04b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = FALSE))))
> t04c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = logical(0)))))
> t04d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = NA))))
> t04e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = "yes"))))
> t04f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = 3))))
> 
> t05a <- tryCatchError(get_icd_codes(with.descriptions = TRUE))
> t05b <- tryCatchError(get_icd_codes(with.descriptions = FALSE))
> t05c <- tryCatchError(get_icd_codes(with.descriptions = logical(0)))
> t05d <- tryCatchError(get_icd_codes(with.descriptions = NA))
> t05e <- tryCatchError(get_icd_codes(with.descriptions = "yes"))
> t05f <- tryCatchError(get_icd_codes(with.descriptions = 3))
> 
> t06a <- tryCatchError(get_icd_codes(with.hierarchy = TRUE))
> t06b <- tryCatchError(get_icd_codes(with.hierarchy = FALSE))
> t06c <- tryCatchError(get_icd_codes(with.hierarchy = logical(0)))
> t06d <- tryCatchError(get_icd_codes(with.hierarchy = NA))
> t06e <- tryCatchError(get_icd_codes(with.hierarchy = "yes"))
> t06f <- tryCatchError(get_icd_codes(with.hierarchy = 3))
> 
> stopifnot(
+   inherits(t02a, "medicalcoder_comorbidities"),
+   inherits(t02b, "medicalcoder_comorbidities"),
+   inherits(t02c, "error"),
+   inherits(t02d, "error"),
+   inherits(t02e, "error"),
+   inherits(t02f, "error"),
+   t02c[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.",
+   t02d[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.",
+   t02e[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.",
+   t02f[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.",
+   inherits(t03a, "medicalcoder_comorbidities"),
+   inherits(t03b, "medicalcoder_comorbidities"),
+   inherits(t03c, "error"),
+   inherits(t03d, "error"),
+   inherits(t03e, "error"),
+   inherits(t03f, "error"),
+   t03c[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.",
+   t03d[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.",
+   t03e[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.",
+   t03f[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.",
+   inherits(t04a, "medicalcoder_comorbidities"),
+   inherits(t04b, "medicalcoder_comorbidities"),
+   inherits(t04c, "error"),
+   inherits(t04d, "error"),
+   inherits(t04e, "error"),
+   inherits(t04f, "error"),
+   t04c[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.",
+   t04d[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.",
+   t04e[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.",
+   t04f[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.",
+   inherits(t05a, "data.frame"),
+   inherits(t05b, "data.frame"),
+   inherits(t05c, "error"),
+   inherits(t05d, "error"),
+   inherits(t05e, "error"),
+   inherits(t05f, "error"),
+   t05c[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.",
+   t05d[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.",
+   t05e[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.",
+   t05f[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.",
+   inherits(t06a, "data.frame"),
+   inherits(t06b, "data.frame"),
+   inherits(t06c, "error"),
+   inherits(t06d, "error"),
+   inherits(t06e, "error"),
+   inherits(t06f, "error"),
+   t06c[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.",
+   t06d[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.",
+   t06e[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.",
+   t06f[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical."
+ )
> 
> ################################################################################
> #                                 End of File                                  #
> ################################################################################
> 
> proc.time()
   user  system elapsed 
   7.75    0.56    8.29