library(medicalcoder) source("utilities.R") ################################################################################ # testing assert_scaler_logical # # Tests: # # t01: # a: verify the method is in the namespace # b: verify the method is not exported # # t02: verify an error is thrown when `full.codes` is not a length-1 # non-missing logical when calling comorbidities() # # t03: verify an error is thrown when `compact.codes` is not a length-1 # non-missing logical when calling comorbidities() # # t04: verify an error is thrown when subconditions is not a length-1 # non-missing logical (using pccc_v3.1 as the method to avoid warning # messages) when calling comorbidities() # # t05: verify an error is thrown when with.descriptions is not a length-1 # non-missing logical when calling get_icd_codes() # # t06: verify an error is thrown when with.hierarchy is not a length-1 # non-missing logical when calling get_icd_codes() stopifnot( t01a = "assert_scalar_logical" %in% ls(getNamespace("medicalcoder"), all.names = TRUE), t01b = !("assert_scalar_logical" %in% getNamespaceExports("medicalcoder")) ) common_args <- list(data = mdcr, method = "pccc_v3.1", icd.codes = "code", poa = 1L) t02a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = TRUE)))) t02b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = FALSE)))) t02c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = logical(0))))) t02d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = NA)))) t02e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = "yes")))) t02f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(full.codes = 3)))) t03a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = TRUE)))) t03b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = FALSE)))) t03c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = logical(0))))) t03d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = NA)))) t03e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = "yes")))) t03f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(compact.codes = 3)))) t04a <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = TRUE)))) t04b <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = FALSE)))) t04c <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = logical(0))))) t04d <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = NA)))) t04e <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = "yes")))) t04f <- tryCatchError(do.call(comorbidities, args = c(common_args, list(subconditions = 3)))) t05a <- tryCatchError(get_icd_codes(with.descriptions = TRUE)) t05b <- tryCatchError(get_icd_codes(with.descriptions = FALSE)) t05c <- tryCatchError(get_icd_codes(with.descriptions = logical(0))) t05d <- tryCatchError(get_icd_codes(with.descriptions = NA)) t05e <- tryCatchError(get_icd_codes(with.descriptions = "yes")) t05f <- tryCatchError(get_icd_codes(with.descriptions = 3)) t06a <- tryCatchError(get_icd_codes(with.hierarchy = TRUE)) t06b <- tryCatchError(get_icd_codes(with.hierarchy = FALSE)) t06c <- tryCatchError(get_icd_codes(with.hierarchy = logical(0))) t06d <- tryCatchError(get_icd_codes(with.hierarchy = NA)) t06e <- tryCatchError(get_icd_codes(with.hierarchy = "yes")) t06f <- tryCatchError(get_icd_codes(with.hierarchy = 3)) stopifnot( inherits(t02a, "medicalcoder_comorbidities"), inherits(t02b, "medicalcoder_comorbidities"), inherits(t02c, "error"), inherits(t02d, "error"), inherits(t02e, "error"), inherits(t02f, "error"), t02c[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.", t02d[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.", t02e[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.", t02f[["message"]] == "The value passed to 'full.codes' is expected to be a length-1 non-missing logical.", inherits(t03a, "medicalcoder_comorbidities"), inherits(t03b, "medicalcoder_comorbidities"), inherits(t03c, "error"), inherits(t03d, "error"), inherits(t03e, "error"), inherits(t03f, "error"), t03c[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.", t03d[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.", t03e[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.", t03f[["message"]] == "The value passed to 'compact.codes' is expected to be a length-1 non-missing logical.", inherits(t04a, "medicalcoder_comorbidities"), inherits(t04b, "medicalcoder_comorbidities"), inherits(t04c, "error"), inherits(t04d, "error"), inherits(t04e, "error"), inherits(t04f, "error"), t04c[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.", t04d[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.", t04e[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.", t04f[["message"]] == "The value passed to 'subconditions' is expected to be a length-1 non-missing logical.", inherits(t05a, "data.frame"), inherits(t05b, "data.frame"), inherits(t05c, "error"), inherits(t05d, "error"), inherits(t05e, "error"), inherits(t05f, "error"), t05c[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.", t05d[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.", t05e[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.", t05f[["message"]] == "The value passed to 'with.descriptions' is expected to be a length-1 non-missing logical.", inherits(t06a, "data.frame"), inherits(t06b, "data.frame"), inherits(t06c, "error"), inherits(t06d, "error"), inherits(t06e, "error"), inherits(t06f, "error"), t06c[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.", t06d[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.", t06e[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical.", t06f[["message"]] == "The value passed to 'with.hierarchy' is expected to be a length-1 non-missing logical." ) ################################################################################ # End of File # 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