* installing *source* package ‘medfate’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c aspwb.cpp -o aspwb.o aspwb.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c biophysicsutils.cpp -o biophysicsutils.o biophysicsutils.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c carbon.cpp -o carbon.o carbon.cpp:7:14: warning: unused variable 'carbonMolarMass' [-Wunused-const-variable] 7 | const double carbonMolarMass = 12.0107; //g*mol-1 | ^~~~~~~~~~~~~~~ carbon.cpp:12:14: warning: unused variable 'leafCperDry' [-Wunused-const-variable] 12 | const double leafCperDry = 0.3; //g C · g dry-1 | ^~~~~~~~~~~ carbon.cpp:13:14: warning: unused variable 'rootCperDry' [-Wunused-const-variable] 13 | const double rootCperDry = 0.4959; //g C · g dry-1 | ^~~~~~~~~~~ 3 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c communication_structures.cpp -o communication_structures.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c firebehaviour.cpp -o firebehaviour.o firebehaviour.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fireseverity.cpp -o fireseverity.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c forestutils.cpp -o forestutils.o forestutils.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fuelmoisture.cpp -o fuelmoisture.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fuelstructure.cpp -o fuelstructure.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c growth.cpp -o growth.o growth.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hydraulics.cpp -o hydraulics.o hydraulics.cpp:12:14: warning: unused variable 'maxPsi' [-Wunused-const-variable] 12 | double const maxPsi = -0.000001; | ^~~~~~ hydraulics.cpp:13:14: warning: unused variable 'cmhead2MPa' [-Wunused-const-variable] 13 | double const cmhead2MPa = 0.00009804139; //Constant to transform cm head to MPa | ^~~~~~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c hydrology.cpp -o hydrology.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c incbeta.cpp -o incbeta.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c incgamma.cpp -o incgamma.o incgamma.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ incgamma.cpp:9:14: warning: unused variable 'machtol' [-Wunused-const-variable] 9 | const double machtol = 1.0E-15; | ^~~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c inner_sperry.cpp -o inner_sperry.o inner_sperry.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ inner_sperry.cpp:10:14: warning: unused variable 'eps_xylem' [-Wunused-const-variable] 10 | const double eps_xylem = 1e3; // xylem elastic modulus (1 GPa = 1000 MPa) | ^~~~~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c inner_sureau.cpp -o inner_sureau.o inner_sureau.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c lightextinction_advanced.cpp -o lightextinction_advanced.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c lightextinction_basic.cpp -o lightextinction_basic.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c modelInput.cpp -o modelInput.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c numerical_solving.cpp -o numerical_solving.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c paramutils.cpp -o paramutils.o paramutils.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c phenology.cpp -o phenology.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c photosynthesis.cpp -o photosynthesis.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c root.cpp -o root.o root.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c soil.cpp -o soil.o soil.cpp:15:14: warning: unused variable 'cmTOMPa' [-Wunused-const-variable] 15 | const double cmTOMPa = 0.00009804139432; | ^~~~~~~ soil.cpp:20:14: warning: unused variable 'mTOMPa' [-Wunused-const-variable] 20 | const double mTOMPa = 0.009804139432; //1/9.804139*0.000001; | ^~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c soil_thermodynamics.cpp -o soil_thermodynamics.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c spwb.cpp -o spwb.o spwb.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ spwb.cpp:538:106: warning: variable 'LAIcellmax' set but not used [-Wunused-but-set-variable] 538 | double s = 0.0, LAIcell = 0.0, LAIcelldead = 0.0, LAIcelllive = 0.0, LAIcellexpanded = 0.0, Cm = 0.0, LAIcellmax = 0.0; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c tissuemoisture.cpp -o tissuemoisture.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c transpiration_advanced.cpp -o transpiration_advanced.o transpiration_advanced.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ transpiration_advanced.cpp:25:14: warning: unused variable 'SIGMA_Wm2' [-Wunused-const-variable] 25 | const double SIGMA_Wm2 = 5.67*1e-8; | ^~~~~~~~~ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c transpiration_basic.cpp -o transpiration_basic.o transpiration_basic.cpp:1:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 1 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ transpiration_basic.cpp:189:10: warning: variable 's' set but not used [-Wunused-but-set-variable] 189 | double s = 0.0, LAIcell = 0.0, canopyHeight = 0.0, LAIcelllive = 0.0, LAIcellexpanded = 0.0,LAIcelldead = 0.0; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c windKatul.cpp -o windKatul.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c windextinction.cpp -o windextinction.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/meteoland/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c woodformation.cpp -o woodformation.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o medfate.so RcppExports.o aspwb.o biophysicsutils.o carbon.o communication_structures.o firebehaviour.o fireseverity.o forestutils.o fuelmoisture.o fuelstructure.o growth.o hydraulics.o hydrology.o incbeta.o incgamma.o inner_sperry.o inner_sureau.o lightextinction_advanced.o lightextinction_basic.o modelInput.o numerical_solving.o paramutils.o phenology.o photosynthesis.o root.o soil.o soil_thermodynamics.o spwb.o tissuemoisture.o transpiration_advanced.o transpiration_basic.o windKatul.o windextinction.o woodformation.o -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/medfate.Rcheck/00LOCK-medfate/00new/medfate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (medfate)