downloading reverse dependencies ... downloading bayes4psy_1.2.13.tar.gz ... ok downloading bpgmm_1.0.9.tar.gz ... ok downloading copCAR_2.0-4.tar.gz ... ok downloading DSSP_0.1.1.tar.gz ... ok downloading genMCMCDiag_0.2.3.tar.gz ... ok downloading JointAI_1.0.6.tar.gz ... ok downloading nse_1.21.tar.gz ... ok downloading PEPBVS_2.1.tar.gz ... ok downloading postpack_0.5.4.tar.gz ... ok downloading qbld_1.0.3.tar.gz ... ok downloading remiod_1.0.2.tar.gz ... ok downloading sklarsomega_3.0-3.tar.gz ... ok downloading stableGR_1.2.tar.gz ... ok downloading bayesImageS_0.6-1.tar.gz ... ok downloading LNIRT_0.5.1.tar.gz ... ok downloading nimble_1.3.0.tar.gz ... ok installing dependencies ‘BAS’, ‘BayesVarSel’, ‘emg’, ‘fabMix’, ‘JointAI’, ‘mcmcse’, ‘metRology’, ‘pgmm’, ‘PottsUtils’, ‘R2OpenBUGS’, ‘stableGR’ also installing the dependency ‘miscF’ begin installing package ‘miscF’ begin installing package ‘emg’ begin installing package ‘metRology’ begin installing package ‘pgmm’ begin installing package ‘fabMix’ begin installing package ‘BAS’ begin installing package ‘BayesVarSel’ begin installing package ‘R2OpenBUGS’ begin installing package ‘mcmcse’ * installing *source* package ‘emg’ ... ** this is package ‘emg’ version ‘1.0.9’ ** package ‘emg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emg) * installing *source* package ‘R2OpenBUGS’ ... ** this is package ‘R2OpenBUGS’ version ‘3.2-4’ ** package ‘R2OpenBUGS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R2OpenBUGS) * installing *source* package ‘pgmm’ ... ** this is package ‘pgmm’ version ‘1.2.8’ ** package ‘pgmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU7katw/R.INSTALL21b080797527dc/pgmm/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aecm.c -o aecm.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussj.c -o gaussj.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pgmm.c -o pgmm.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updates.c -o updates.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o pgmm.so aecm.o gaussj.o init.o pgmm.o updates.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU7katw/R.INSTALL21b080797527dc/pgmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pgmm/00new/pgmm/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pgmm) * installing *source* package ‘metRology’ ... ** this is package ‘metRology’ version ‘0.9-29-2’ ** package ‘metRology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metRology) * installing *source* package ‘miscF’ ... ** this is package ‘miscF’ version ‘0.1-5’ ** package ‘miscF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKXNsMB/R.INSTALL21b0772188373d/miscF/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c curvePolynomialGetDM.c -o curvePolynomialGetDM.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatialLmeUpdateLambda2inv.c -o spatialLmeUpdateLambda2inv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatialLmeUpdateMu.c -o spatialLmeUpdateMu.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatialLmeUpdateSigma2invRate.c -o spatialLmeUpdateSigma2invRate.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o miscF.so curvePolynomialGetDM.o registerDynamicSymbol.o spatialLmeUpdateLambda2inv.o spatialLmeUpdateMu.o spatialLmeUpdateSigma2invRate.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKXNsMB/R.INSTALL21b0772188373d/miscF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-miscF/00new/miscF/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miscF) begin installing package ‘PottsUtils’ * installing *source* package ‘BAS’ ... ** this is package ‘BAS’ version ‘1.7.5’ ** package ‘BAS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwSta7P/R.INSTALL21b07c3d517695/BAS/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c E_ZS.c -o E_ZS.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MH-funs.c -o MH-funs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ZS_approx_full_np.c -o ZS_approx_full_np.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ZS_approx_null_np.c -o ZS_approx_null_np.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amcmc-funs.c -o amcmc-funs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesglm.c -o bayesglm.o bayesglm.c: In function ‘glm_fit’: bayesglm.c:219:17: warning: ‘disp’ may be used uninitialized [-Wmaybe-uninitialized] 219 | se[j] = sqrt(se[j]*disp); | ^~~~~~~~~~~~~~~~ bayesglm.c:95:10: note: ‘disp’ was declared here 95 | double disp; | ^~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesreg.c -o bayesreg.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betapriorfamily.c -o betapriorfamily.o betapriorfamily.c: In function ‘intrinsic_glm_shrinkage’: betapriorfamily.c:239:38: warning: unused variable ‘u’ [-Wunused-variable] 239 | double a, b, s, r, v, theta, n, p, u, shrinkage; | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cch.c -o cch.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dch1up.f -o dch1up.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c family.c -o family.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_deterministic.c -o glm_deterministic.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_fit.c -o glm_fit.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_lpy.c -o glm_lpy.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_mcmc.c -o glm_mcmc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_mcmcbas.c -o glm_mcmcbas.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_sampleworep.c -o glm_sampleworep.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hg_approx_null_np.c -o hg_approx_null_np.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hyp1F1.c -o hyp1F1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hyp2f1.c -o hyp2f1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hypergeometric1F1.c -o hypergeometric1F1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hypergeometric2F1.c -o hypergeometric2F1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_amcmc.c -o lm_amcmc.o lm_amcmc.c: In function ‘amcmc’: lm_amcmc.c:260:34: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 260 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_amcmc.c:165:13: note: ‘new_loc’ was declared here 165 | int new_loc; | ^~~~~~~ lm_amcmc.c:357:34: warning: ‘postold’ may be used uninitialized [-Wmaybe-uninitialized] 357 | if (!IS) MH = exp(postnew - postold + log(pigammaold) - log(pigammanew)); | ~~~~~~~~^~~~~~~~~ lm_amcmc.c:50:46: note: ‘postold’ was declared here 50 | R2_m, RSquareFull, logmargy, postold, postnew; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_deterministic.c -o lm_deterministic.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_mcmc.c -o lm_mcmc.o lm_mcmc.c: In function ‘mcmc_new’: lm_mcmc.c:226:34: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 226 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmc.c:132:13: note: ‘new_loc’ was declared here 132 | int new_loc; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_mcmcbas.c -o lm_mcmcbas.o lm_mcmcbas.c: In function ‘mcmcbas’: lm_mcmcbas.c:283:22: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 283 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmcbas.c:181:9: note: ‘new_loc’ was declared here 181 | int new_loc; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_sampleworep.c -o lm_sampleworep.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mem.c -o mem.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_probabilities.c -o model_probabilities.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mtherr.c -o mtherr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tree_structures.c -o tree_structures.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o BAS.so E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o tree_structures.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwSta7P/R.INSTALL21b07c3d517695/BAS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BAS/00new/BAS/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAS) * installing *source* package ‘BayesVarSel’ ... ** this is package ‘BayesVarSel’ version ‘2.4.5’ ** package ‘BayesVarSel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpq4va2J/R.INSTALL21b08612fdbc7c/BayesVarSel/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BayesVarSel_init.c -o BayesVarSel_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Gibbsauxiliaryfuncs.c -o Gibbsauxiliaryfuncs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c allBF.c -o allBF.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c auxiliaryfuncs.c -o auxiliaryfuncs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c main.c -o main.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mainGibbs.c -o mainGibbs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mainGibbsF.c -o mainGibbsF.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mainSingle.c -o mainSingle.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c priorprob.c -o priorprob.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o BayesVarSel.so BayesVarSel_init.o Gibbsauxiliaryfuncs.o allBF.o auxiliaryfuncs.o main.o mainGibbs.o mainGibbsF.o mainSingle.o priorprob.o -L/usr/local/lib -lgsl -lgslcblas -lm -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpq4va2J/R.INSTALL21b08612fdbc7c/BayesVarSel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BayesVarSel/00new/BayesVarSel/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesVarSel) * installing *source* package ‘PottsUtils’ ... ** this is package ‘PottsUtils’ version ‘0.3-3.1’ ** package ‘PottsUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYltS9n/R.INSTALL21b2b57ae3c165/PottsUtils/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sw.c -o sw.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o PottsUtils.so registerDynamicSymbol.o sw.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYltS9n/R.INSTALL21b2b57ae3c165/PottsUtils/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PottsUtils/00new/PottsUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PottsUtils) * installing *source* package ‘fabMix’ ... ** this is package ‘fabMix’ version ‘5.1’ ** package ‘fabMix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2BfO6i/R.INSTALL21b0712e75ec20/fabMix/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fabMix.cpp -o fabMix.o fabMix.cpp: In function ‘Rcpp::List compute_A_B_G_D_and_simulate_mu_Lambda_CCU(arma::mat, Rcpp::List, arma::mat, int, arma::vec, arma::mat, arma::vec)’: fabMix.cpp:127:16: warning: unused variable ‘u’ [-Wunused-variable] 127 | double u; | ^ fabMix.cpp: In function ‘Rcpp::List compute_A_B_G_D_and_simulate_mu_Lambda_CUU(arma::cube, Rcpp::List, arma::mat, int, arma::vec, arma::mat, arma::vec)’: fabMix.cpp:196:16: warning: unused variable ‘u’ [-Wunused-variable] 196 | double u; | ^ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fabMix.so RcppExports.o fabMix.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2BfO6i/R.INSTALL21b0712e75ec20/fabMix/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fabMix/00new/fabMix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fabMix) * installing *source* package ‘mcmcse’ ... ** this is package ‘mcmcse’ version ‘1.5-1’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpITFpIE/R.INSTALL21b07e1fb00fe3/mcmcse/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c batchsize.cpp -o batchsize.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c inseq.cpp -o inseq.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c lag.cpp -o lag.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c mbmc.cpp -o mbmc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c mcseqbm.cpp -o mcseqbm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c mcseqobm.cpp -o mcseqobm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c mcseqsub.cpp -o mcseqsub.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c mobmc.cpp -o mobmc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c msvec.cpp -o msvec.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mcmcse.so RcppExports.o batchsize.o init.o inseq.o lag.o mbmc.o mcseqbm.o mcseqobm.o mcseqsub.o mobmc.o msvec.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpITFpIE/R.INSTALL21b07e1fb00fe3/mcmcse/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mcmcse/00new/mcmcse/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcmcse) begin installing package ‘stableGR’ begin installing package ‘JointAI’ * installing *source* package ‘stableGR’ ... ** this is package ‘stableGR’ version ‘1.2’ ** package ‘stableGR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stableGR) * installing *source* package ‘JointAI’ ... ** this is package ‘JointAI’ version ‘1.0.6’ ** package ‘JointAI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JointAI) checking mcmcse_1.5-1.tar.gz ... checking bayes4psy_1.2.13.tar.gz ... checking bpgmm_1.0.9.tar.gz ... checking copCAR_2.0-4.tar.gz ... checking DSSP_0.1.1.tar.gz ... checking genMCMCDiag_0.2.3.tar.gz ... checking JointAI_1.0.6.tar.gz ... checking nse_1.21.tar.gz ... checking PEPBVS_2.1.tar.gz ... checking postpack_0.5.4.tar.gz ... checking qbld_1.0.3.tar.gz ... checking remiod_1.0.2.tar.gz ... checking sklarsomega_3.0-3.tar.gz ... checking stableGR_1.2.tar.gz ... checking bayesImageS_0.6-1.tar.gz ... checking LNIRT_0.5.1.tar.gz ... checking nimble_1.3.0.tar.gz ... Depends: Package: mcmcse Imports: utils, ellipse, Rcpp (>= 0.12.10), fftwtools, testthat LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed mcmcse 79.66 7.036 89.251 Results: Check status summary: WARNING NOTE OK Source packages 0 0 1 Reverse depends 4 4 8 Check results summary: mcmcse ... OK rdepends_bayes4psy ... OK rdepends_bayesImageS ... WARNING * checking whether package ‘bayesImageS’ can be installed ... [35s/35s] WARNING rdepends_bpgmm ... WARNING * checking whether package ‘bpgmm’ can be installed ... [47s/47s] WARNING * checking C++ specification ... NOTE rdepends_copCAR ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_DSSP ... WARNING * checking whether package ‘DSSP’ can be installed ... [26s/26s] WARNING * checking C++ specification ... NOTE rdepends_genMCMCDiag ... OK rdepends_JointAI ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_LNIRT ... OK rdepends_nimble ... OK rdepends_nse ... NOTE * checking Rd cross-references ... NOTE rdepends_PEPBVS ... WARNING * checking whether package ‘PEPBVS’ can be installed ... [20s/20s] WARNING rdepends_postpack ... OK rdepends_qbld ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_remiod ... OK rdepends_sklarsomega ... OK rdepends_stableGR ... OK Check results changes: Package: bayesImageS Check: CRAN incoming feasibility Old result: NOTE Package: bpgmm Check: CRAN incoming feasibility Old result: NOTE Package: copCAR Check: CRAN incoming feasibility Old result: NOTE Package: DSSP Check: CRAN incoming feasibility Old result: NOTE Package: LNIRT Check: CRAN incoming feasibility Old result: NOTE Package: nse Check: CRAN incoming feasibility Old result: NOTE Package: qbld Check: CRAN incoming feasibility Old result: NOTE Package: remiod Check: CRAN incoming feasibility Old result: NOTE