downloading reverse dependencies ...
downloading Rdimtools_1.1.2.tar.gz ... ok
downloading T4cluster_0.1.2.tar.gz ... ok
downloading latrend_1.6.2.tar.gz ... ok

installing dependencies ‘ADMM’, ‘clusterCrit’, ‘crimCV’, ‘funFEM’,
  ‘kml’, ‘lcmm’, ‘maotai’, ‘mclustcomp’, ‘mixAK’, ‘Rdimtools’,
  ‘rstiefel’, ‘simTool’

begin installing package ‘ADMM’
begin installing package ‘maotai’
begin installing package ‘mclustcomp’
begin installing package ‘rstiefel’
begin installing package ‘kml’
begin installing package ‘funFEM’
begin installing package ‘lcmm’
begin installing package ‘crimCV’
begin installing package ‘mixAK’
begin installing package ‘simTool’
begin installing package ‘clusterCrit’
* installing *source* package ‘rstiefel’ ...
** this is package ‘rstiefel’ version ‘1.0.1’
** package ‘rstiefel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgTDHjQ/R.INSTALL2f83e5300ac9b1/rstiefel/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rstiefel.c -o rstiefel.o
rstiefel.c: In function ‘rtheta_bmf’:
rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized]
   69 |   return th;
      |          ^~
rstiefel.c:44:10: note: ‘th’ was declared here
   44 |   double th;
      |          ^~
rstiefel.c: In function ‘rtheta_bing’:
rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized]
  136 |   return th;
      |          ^~
rstiefel.c:119:10: note: ‘th’ was declared here
  119 |   double th;
      |          ^~
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgTDHjQ/R.INSTALL2f83e5300ac9b1/rstiefel/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstiefel)
* installing *source* package ‘simTool’ ...
** this is package ‘simTool’ version ‘1.1.8’
** package ‘simTool’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (simTool)
* installing *source* package ‘clusterCrit’ ...
** this is package ‘clusterCrit’ version ‘1.3.0’
** package ‘clusterCrit’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-15 accepts -g... yes
checking for gcc-15 option to accept ISO C89... none needed
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran-15 accepts -g... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRsPshi/R.INSTALL2f83eb691f3853/clusterCrit/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c criteria.c -o criteria.o
criteria.c: In function ‘cluc_errorMsg’:
criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable]
  331 |         char    msg[128];
      |                 ^~~
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  norms.f95 -o norms.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  matrix.f95 -o matrix.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  critUtils.f95 -o critUtils.o
critUtils.f95:847:26:

  847 |                sConc(1) = sConc(1) + ip - 1
      |                          1
Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion]
critUtils.f95:851:29:

  851 |                   sConc(2) = sConc(2) + (sPNum(1) - iw + 1)
      |                             1
Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion]
critUtils.f95:855:29:

  855 |                   sConc(1) = sConc(1) + 1
      |                             1
Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion]
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  indices.f95 -o indices.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  critCalc.f95 -o critCalc.o
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRsPshi/R.INSTALL2f83eb691f3853/clusterCrit/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clusterCrit/00new/clusterCrit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clusterCrit)
* installing *source* package ‘funFEM’ ...
** this is package ‘funFEM’ version ‘1.2’
** package ‘funFEM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (funFEM)
* installing *source* package ‘kml’ ...
** this is package ‘kml’ version ‘2.5.0’
** package ‘kml’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZqEu2Q/R.INSTALL2f83ea644264ac/kml/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kml.c -o kml.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kml_init.c -o kml_init.o
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o kml.so kml.o kml_init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZqEu2Q/R.INSTALL2f83ea644264ac/kml/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kml/00new/kml/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading

   ####################################################################
  ######################### Class ClustLongData ######################
 ############################## Creation ############################
####################################################################
### Definition ###
### Getteur ###
### Setteur ###


   ####################################################################
  ######################### Class ClustLongData ######################
 ############################### Autres #############################
####################################################################

--------------------------------------------------------------------
------------------------- Class ClustLongData ----------------------
--------------------------------- Fin ------------------------------
--------------------------------------------------------------------
### Method : 'show' for ParKml ###

####################################################################
########################## Class parChoice #########################
############################# Creation #############################
####################################################################
### Constructor ###
### Show ###
### Getteur ###
### Setteur ###

--------------------------------------------------------------------
------------------------ Fin Test ParChoice ------------------------
--------------------------------------------------------------------

####################################################################
################################ kml ###############################
############################# Creation #############################
####################################################################
### Method: 'choice' pour clusterizLongData ###

-------------------------------------------------------------------
------------------------------- kml -------------------------------
------------------------------- Fin -------------------------------
-------------------------------------------------------------------
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (kml)
* installing *source* package ‘crimCV’ ...
** this is package ‘crimCV’ version ‘1.0.0’
** package ‘crimCV’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYWqYJD/R.INSTALL2f83da64e6b536/crimCV/src'
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  crimCV.f90 -o crimCV.o
crimCV.f90:554:9:

  554 |     lwrk=w(1)
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
crimCV.f90:405:9:

  405 |     lwrk=w(1)
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
crimCV.f90:374:9:

  374 |     lwrk=w(1)
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
crimCV.f90:1066:2:

 1066 |   function sddev(np,x) result(out)
      |  ^
Warning: ‘sddev’ defined but not used [-Wunused-function]
crimCV.f90:1495:11:

 1495 |        if (ierr /= 0) then
      |           ^
Warning: ‘*ierr_30(D)’ may be used uninitialized [-Wmaybe-uninitialized]
crimCV.f90:2182:11:

 2182 |        if (ierr /= 0) then
      |           ^
Warning: ‘*ierr_30(D)’ may be used uninitialized [-Wmaybe-uninitialized]
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c packagename_init.c -o packagename_init.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wrap.c -o wrap.o
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o crimCV.so crimCV.o packagename_init.o wrap.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYWqYJD/R.INSTALL2f83da64e6b536/crimCV/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crimCV/00new/crimCV/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crimCV)
* installing *source* package ‘mclustcomp’ ...
** this is package ‘mclustcomp’ version ‘0.3.5’
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbLSs9w/R.INSTALL2f83dd71794042/mclustcomp/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c auxiliary.cpp -o auxiliary.o
auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’:
auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable]
  124 |   double maxthr = max(altthr);
      |          ^~~~~~
auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable]
  125 |   int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy
      |       ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c auxiliary_arma.cpp -o auxiliary_arma.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o auxiliary_arma.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbLSs9w/R.INSTALL2f83dd71794042/mclustcomp/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mclustcomp)
* installing *source* package ‘ADMM’ ...
** this is package ‘ADMM’ version ‘0.3.4’
** package ‘ADMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEA9PmW/R.INSTALL2f83d167b77f89/ADMM/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_auxiliary.cpp -o src_auxiliary.o
src_auxiliary.cpp: In function ‘arma::cube multipleinversion(arma::mat, double, arma::mat, arma::mat, arma::vec)’:
src_auxiliary.cpp:16:13: warning: unused variable ‘n’ [-Wunused-variable]
   16 |   const int n = A.n_rows;
      |             ^
src_auxiliary.cpp:18:13: warning: unused variable ‘d1’ [-Wunused-variable]
   18 |   const int d1 = R.n_rows;
      |             ^~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_gathered.cpp -o src_gathered.o
src_gathered.cpp: In function ‘Rcpp::List admm_bp(const arma::mat&, const arma::colvec&, arma::colvec&, double, double, int, double, double)’:
src_gathered.cpp:137:13: warning: unused variable ‘m’ [-Wunused-variable]
  137 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘arma::mat enet_factor(arma::mat, double)’:
src_gathered.cpp:226:13: warning: unused variable ‘m’ [-Wunused-variable]
  226 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_enet(const arma::mat&, const arma::colvec&, double, double, double, double, int, double)’:
src_gathered.cpp:236:13: warning: unused variable ‘m’ [-Wunused-variable]
  236 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘arma::mat genlasso_factor(const arma::mat&, double, const arma::mat&)’:
src_gathered.cpp:326:13: warning: unused variable ‘m’ [-Wunused-variable]
  326 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp:327:13: warning: unused variable ‘n’ [-Wunused-variable]
  327 |   const int n = A.n_cols;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_genlasso(const arma::mat&, const arma::colvec&, const arma::mat&, double, double, double, int, double)’:
src_gathered.cpp:335:13: warning: unused variable ‘m’ [-Wunused-variable]
  335 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_sdp(arma::mat&, arma::field<arma::Mat<double> >&, arma::vec, double, double, double, int, double, bool)’:
src_gathered.cpp:929:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  929 |   for (int i=0;i<m;i++){
      |                ~^~
src_gathered.cpp:949:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  949 |     for (int i=0;i<m;i++){
      |                  ~^~
src_gathered.cpp:959:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  959 |     for (int i=0;i<m;i++){
      |                  ~^~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ADMM.so RcppExports.o src_auxiliary.o src_gathered.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEA9PmW/R.INSTALL2f83d167b77f89/ADMM/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ADMM/00new/ADMM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADMM)
* installing *source* package ‘mixAK’ ...
** this is package ‘mixAK’ version ‘5.8’
** package ‘mixAK’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLSAMg6/R.INSTALL2f83e327e4e88e/mixAK/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c 00mixAK_init.cpp -o 00mixAK_init.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AK_BLAS.cpp -o AK_BLAS.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AK_BSTAT.cpp -o AK_BSTAT.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AK_LAPACK.cpp -o AK_LAPACK.o
AK_LAPACK.cpp: In function ‘void AK_LAPACK::MPpinvSP(double*, double*, int*, const int*)’:
AK_LAPACK.cpp:1002:17: warning: variable ‘LTp’ set but not used [-Wunused-but-set-variable]
 1002 |   static int i, LTp, p_p;
      |                 ^~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AK_Utils.cpp -o AK_Utils.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_Dirichlet.cpp -o Dist_Dirichlet.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_Discrete.cpp -o Dist_Discrete.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_MVN.cpp -o Dist_MVN.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_MVT.cpp -o Dist_MVT.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_TMVN.cpp -o Dist_TMVN.o
Dist_TMVN.cpp: In function ‘void Dist::rTMVN2(double*, double*, const double*, const double*, const int*, const double*, const double*, const int*, const int*)’:
Dist_TMVN.cpp:84:33: warning: variable ‘aP’ set but not used [-Wunused-but-set-variable]
   84 |   static const double *alphaP, *aP, *bP, *GzP;
      |                                 ^~
Dist_TMVN.cpp:84:38: warning: variable ‘bP’ set but not used [-Wunused-but-set-variable]
   84 |   static const double *alphaP, *aP, *bP, *GzP;
      |                                      ^~
Dist_TMVN.cpp:84:43: warning: variable ‘GzP’ set but not used [-Wunused-but-set-variable]
   84 |   static const double *alphaP, *aP, *bP, *GzP;
      |                                           ^~~
Dist_TMVN.cpp:85:21: warning: variable ‘truncP’ set but not used [-Wunused-but-set-variable]
   85 |   static const int *truncP;
      |                     ^~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_TNorm.cpp -o Dist_TNorm.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_TmixMVN.cpp -o Dist_TmixMVN.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_TmixNorm.cpp -o Dist_TmixNorm.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_Wishart.cpp -o Dist_Wishart.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_mixMVN.cpp -o Dist_mixMVN.o
Dist_mixMVN.cpp: In function ‘void Dist::dmixMVN_R(double*, double*, double*, double*, int*, const double*, const int*, const double*, const int*, const int*)’:
Dist_mixMVN.cpp:213:13: warning: unused variable ‘LTnx’ [-Wunused-variable]
  213 |   const int LTnx = (*nx * (*nx + 1))/2;
      |             ^~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Dist_mixNorm.cpp -o Dist_mixNorm.o
Dist_mixNorm.cpp: In function ‘void Dist::dmixNorm_R(double*, const double*, const int*, const double*, const double*, const double*, const int*)’:
Dist_mixNorm.cpp:91:7: warning: unused variable ‘k’ [-Wunused-variable]
   91 |   int k, j;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_Deviance.cpp -o GLMM_Deviance.o
GLMM_Deviance.cpp: In function ‘void GLMM::Deviance(double*, double*, double*, double*, double*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*)’:
GLMM_Deviance.cpp:140:10: warning: unused variable ‘U2_g’ [-Wunused-variable]
  140 |   double U2_g[5];
      |          ^~~~
GLMM_Deviance.cpp:141:10: warning: unused variable ‘H2_g’ [-Wunused-variable]
  141 |   double H2_g[15];
      |          ^~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_Deviance2.cpp -o GLMM_Deviance2.o
GLMM_Deviance2.cpp: In function ‘void GLMM::Deviance2(double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’:
GLMM_Deviance2.cpp:104:28: warning: unused variable ‘bDb’ [-Wunused-variable]
  104 |   static double log_det_R, bDb, loglik_ik, max_log_pi_ik;
      |                            ^~~
GLMM_Deviance2.cpp:130:18: warning: unused variable ‘bscaled_hatP’ [-Wunused-variable]
  130 |   static double *bscaled_hatP;
      |                  ^~~~~~~~~~~~
GLMM_Deviance2.cpp:160:10: warning: unused variable ‘U2_g’ [-Wunused-variable]
  160 |   double U2_g[5];
      |          ^~~~
GLMM_Deviance2.cpp:161:10: warning: unused variable ‘H2_g’ [-Wunused-variable]
  161 |   double H2_g[15];
      |          ^~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_Deviance2Pr_obs.cpp -o GLMM_Deviance2Pr_obs.o
GLMM_Deviance2Pr_obs.cpp: In function ‘void GLMM::Deviance2Pr_obs(double*, const double*, const double*, const double*, const int*, const int*)’:
GLMM_Deviance2Pr_obs.cpp:34:17: warning: unused variable ‘sum_w_L_ik’ [-Wunused-variable]
   34 |   static double sum_w_L_ik;
      |                 ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_MCMC.cpp -o GLMM_MCMC.o
GLMM_MCMC.cpp: In function ‘void GLMM_MCMC(double*, int*, const int*, int*, const double*, double*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*)’:
GLMM_MCMC.cpp:96:13: warning: unused variable ‘DEBUG’ [-Wunused-variable]
   96 |   const int DEBUG = 0;
      |             ^~~~~
GLMM_MCMC.cpp:253:17: warning: unused variable ‘h_df’ [-Wunused-variable]
  253 |   const double *h_df     = g_df + 1;
      |                 ^~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_NMixRelabel.cpp -o GLMM_NMixRelabel.o
GLMM_NMixRelabel.cpp:346:1: warning: ‘/*’ within comment [-Wcomment]
  346 | /***** %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% *****/
GLMM_NMixRelabel.cpp: In function ‘void GLMM_NMixRelabel(const int*, const int*, const int*, double*, int*, const int*, const int*, const int*, int*, const double*, double*, const int*, const double*, const int*, const int*, const double*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, int*, int*, int*)’:
GLMM_NMixRelabel.cpp:543:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized]
  543 |     switch (simpleType){
      |     ^~~~~~
GLMM_NMixRelabel.cpp:392:7: note: ‘simpleType’ was declared here
  392 |   int simpleType;
      |       ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_PED.cpp -o GLMM_PED.o
GLMM_PED.cpp: In function ‘void GLMM_PED(double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, const int*, int*, const double*, double*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’:
GLMM_PED.cpp:123:7: warning: unused variable ‘LT_max_p_fi’ [-Wunused-variable]
  123 |   int LT_max_p_fi = (max_p_fi * (max_p_fi + 1)) / 2;
      |       ^~~~~~~~~~~
GLMM_PED.cpp:355:7: warning: unused variable ‘max_N_s’ [-Wunused-variable]
  355 |   int max_N_s = AK_Basic::maxArray(N_s, R);
      |       ^~~~~~~
GLMM_PED.cpp:512:12: warning: unused variable ‘eta_zsrespP’ [-Wunused-variable]
  512 |   double **eta_zsrespP = R_Calloc(R, double*);
      |            ^~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_copy_shift_eta_meanY_Zresp.cpp -o GLMM_copy_shift_eta_meanY_Zresp.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_create_SZitZiS.cpp -o GLMM_create_SZitZiS.o
GLMM_create_SZitZiS.cpp: In function ‘void GLMM::create_SZitZiS(double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’:
GLMM_create_SZitZiS.cpp:129:21: warning: ‘SZitZiS_is’ may be used uninitialized [-Wmaybe-uninitialized]
  129 |           SZitZiS_is++;
      |           ~~~~~~~~~~^~
GLMM_create_SZitZiS.cpp:34:11: note: ‘SZitZiS_is’ was declared here
   34 |   double *SZitZiS_is, *SZitZiSP;
      |           ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_create_SZitZiS_4longitDA.cpp -o GLMM_create_SZitZiS_4longitDA.o
GLMM_create_SZitZiS_4longitDA.cpp: In function ‘void GLMM::create_SZitZiS_4longitDA(double*, double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’:
GLMM_create_SZitZiS_4longitDA.cpp:34:41: warning: unused variable ‘SZitZiSP’ [-Wunused-variable]
   34 |   double *SZitZiS_c_is, *SZitZiS_d_is, *SZitZiSP, *SZitZiS_prev;
      |                                         ^~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_create_XtX.cpp -o GLMM_create_XtX.o
GLMM_create_XtX.cpp: In function ‘void GLMM::create_XtX(double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’:
GLMM_create_XtX.cpp:109:16: warning: ‘XtX_s’ may be used uninitialized [-Wmaybe-uninitialized]
  109 |           XtX_s++;
      |           ~~~~~^~
GLMM_create_XtX.cpp:31:11: note: ‘XtX_s’ was declared here
   31 |   double *XtX_s, *XtXP;
      |           ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_create_ZS.cpp -o GLMM_create_ZS.o
GLMM_create_ZS.cpp: In function ‘void GLMM::create_ZS(double*, double**, int**, double**, int**, const double*, const int*, const int*, const int*, const int*)’:
GLMM_create_ZS.cpp:33:26: warning: unused variable ‘scaleP2’ [-Wunused-variable]
   33 |   const double *scaleP, *scaleP2;
      |                          ^~~~~~~
GLMM_create_ZS.cpp:42:7: warning: unused variable ‘iZS’ [-Wunused-variable]
   42 |   int iZS = 0;
      |       ^~~
GLMM_create_ZS.cpp:96:31: warning: ‘ZP’ may be used uninitialized [-Wmaybe-uninitialized]
   96 |       if (*qP) ZrespP[s] = ZP - (*qP - 1);
      |                            ~~~^~~~~~~~~~~
GLMM_create_ZS.cpp:31:26: note: ‘ZP’ was declared here
   31 |   double *ZSP, *Zstart, *ZP;
      |                          ^~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_create_ZiS.cpp -o GLMM_create_ZiS.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_dY_meanY.cpp -o GLMM_dY_meanY.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_eta_fixed_random2eta_meanY.cpp -o GLMM_eta_fixed_random2eta_meanY.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_fitted_Bernoulli_Logit.cpp -o GLMM_fitted_Bernoulli_Logit.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_fitted_Poisson_Log.cpp -o GLMM_fitted_Poisson_Log.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_linear_predictors.cpp -o GLMM_linear_predictors.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_longitDA.cpp -o GLMM_longitDA.o
GLMM_longitDA.cpp: In function ‘void GLMM_longitDA(double*, const int*, int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, int*)’:
GLMM_longitDA.cpp:63:13: warning: unused variable ‘DEBUG’ [-Wunused-variable]
   63 |   const int DEBUG = 0;
      |             ^~~~~
GLMM_longitDA.cpp:66:14: warning: unused variable ‘m’ [-Wunused-variable]
   66 |   int s, cl, m, i, j, k;
      |              ^
GLMM_longitDA.cpp:66:20: warning: unused variable ‘j’ [-Wunused-variable]
   66 |   int s, cl, m, i, j, k;
      |                    ^
GLMM_longitDA.cpp:70:13: warning: unused variable ‘R_I’ [-Wunused-variable]
   70 |   const int R_I   = R * *I;
      |             ^~~
GLMM_longitDA.cpp:162:7: warning: unused variable ‘backs’ [-Wunused-variable]
  162 |   int backs = 1;
      |       ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_longitDA2.cpp -o GLMM_longitDA2.o
GLMM_longitDA2.cpp: In function ‘void GLMM_longitDA2(const int*, double*, const int*, int*, const int*, const int*, const int*, const int*, int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*)’:
GLMM_longitDA2.cpp:435:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  435 |       if (*nonSilent && !(iter_lC % *info) || iter_lC == *keepMCMC_cl){
      |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
GLMM_longitDA2.cpp:85:14: warning: unused variable ‘m’ [-Wunused-variable]
   85 |   int s, cl, m, i, j, k;
      |              ^
GLMM_longitDA2.cpp:290:7: warning: unused variable ‘backs’ [-Wunused-variable]
  290 |   int backs = 1;
      |       ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_longitPred_nmix_gauss.cpp -o GLMM_longitPred_nmix_gauss.o
GLMM_longitPred_nmix_gauss.cpp: In function ‘void GLMM::longitPred_nmix_gauss(double*, double*, double*, double**, double*, double*, double*, int*, double**, int**, double**, double**, double**, int*, double**, int**, double**, const double*, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*)’:
GLMM_longitPred_nmix_gauss.cpp:82:31: warning: unused variable ‘eta_randomP’ [-Wunused-variable]
   82 |   static double *eta_fixedP, *eta_randomP, *eta_zsP;
      |                               ^~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_newData.cpp -o GLMM_newData.o
GLMM_newData.cpp: In function ‘void GLMM::newData(double*, int*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const int*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’:
GLMM_newData.cpp:47:15: warning: unused variable ‘fname’ [-Wunused-variable]
   47 |   const char *fname = "GLMM::newData";
      |               ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_scale_ZitZi.cpp -o GLMM_scale_ZitZi.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_updateFixEf.cpp -o GLMM_updateFixEf.o
GLMM_updateFixEf.cpp: In function ‘void GLMM::updateFixEf(double*, double*, double*, double*, double*, double*, int*, int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’:
GLMM_updateFixEf.cpp:72:40: warning: unused variable ‘dworkP’ [-Wunused-variable]
   72 |   static double *mu_fullP, *Li_fullP, *dworkP, *beta_propP;
      |                                        ^~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_updateHyperVars_eps.cpp -o GLMM_updateHyperVars_eps.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_updateRanEf.cpp -o GLMM_updateRanEf.o
GLMM_updateRanEf.cpp:498:5: warning: ‘/*’ within comment [-Wcomment]
  498 |     /*** +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ***/
GLMM_updateRanEf.cpp: In function ‘void GLMM::updateRanEf(double*, double*, double**, double**, double**, double*, double*, double**, int**, double**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’:
GLMM_updateRanEf.cpp:76:32: warning: unused variable ‘row’ [-Wunused-variable]
   76 |   static int s, i, j, k, itmp, row, col;
      |                                ^~~
GLMM_updateRanEf.cpp:76:37: warning: unused variable ‘col’ [-Wunused-variable]
   76 |   static int s, i, j, k, itmp, row, col;
      |                                     ^~~
GLMM_updateRanEf.cpp:82:88: warning: unused variable ‘Li_full_backupP’ [-Wunused-variable]
   82 |   static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP;
      |                                                                                        ^~~~~~~~~~~~~~~
GLMM_updateRanEf.cpp:82:106: warning: unused variable ‘Li_fullP’ [-Wunused-variable]
   82 |   static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP;
      |                                                                                                          ^~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_updateRanEf_QR.cpp -o GLMM_updateRanEf_QR.o
GLMM_updateRanEf_QR.cpp: In function ‘void GLMM::updateRanEf_QR(double*, double*, double**, double**, double**, double*, int*, double*, double**, int**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’:
GLMM_updateRanEf_QR.cpp:73:20: warning: unused variable ‘j’ [-Wunused-variable]
   73 |   static int s, i, j, k, l;
      |                    ^
GLMM_updateRanEf_QR.cpp:73:23: warning: unused variable ‘k’ [-Wunused-variable]
   73 |   static int s, i, j, k, l;
      |                       ^
GLMM_updateRanEf_QR.cpp:73:26: warning: unused variable ‘l’ [-Wunused-variable]
   73 |   static int s, i, j, k, l;
      |                          ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GLMM_updateVars_eps.cpp -o GLMM_updateVars_eps.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LogLik_Bernoulli_Logit.cpp -o LogLik_Bernoulli_Logit.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LogLik_Gauss_Identity.cpp -o LogLik_Gauss_Identity.o
LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity1(double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’:
LogLik_Gauss_Identity.cpp:32:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable]
   32 |   static const double *offsetP, *xP, *thetaP, *log_y_factorP;
      |                                                ^~~~~~~~~~~~~
LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi1(double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’:
LogLik_Gauss_Identity.cpp:106:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable]
  106 |   static const double *offsetP, *xP, *thetaP, *log_y_factorP;
      |                                                ^~~~~~~~~~~~~
LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi_stres1(double*, double*, double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’:
LogLik_Gauss_Identity.cpp:188:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable]
  188 |   static const double *offsetP, *xP, *thetaP, *log_y_factorP;
      |                                                ^~~~~~~~~~~~~
LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity3(double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’:
LogLik_Gauss_Identity.cpp:460:20: warning: unused variable ‘k’ [-Wunused-variable]
  460 |   static int i, j, k;
      |                    ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LogLik_Poisson_Log.cpp -o LogLik_Poisson_Log.o
LogLik_Poisson_Log.cpp: In function ‘void LogLik::Poisson_Log_sqrt_w_phi_stres2(double*, double*, double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*)’:
LogLik_Poisson_Log.cpp:295:17: warning: unused variable ‘eta_now’ [-Wunused-variable]
  295 |   static double eta_now, ll_now;
      |                 ^~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MCMC_Moments_NormalApprox.cpp -o MCMC_Moments_NormalApprox.o
MCMC_Moments_NormalApprox.cpp: In function ‘void MCMC::Moments_NormalApprox(double*, double*, const double*, const double*, const double*, const int*)’:
MCMC_Moments_NormalApprox.cpp:96:27: warning: unused variable ‘QP’ [-Wunused-variable]
   96 |   static double *cmeanP, *QP;
      |                           ^~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MCMC_Moments_NormalApprox_QR.cpp -o MCMC_Moments_NormalApprox_QR.o
MCMC_Moments_NormalApprox_QR.cpp: In function ‘void MCMC::Moments_NormalApprox_QR(double*, double*, int*, int*, double*, double*, int*, const double*, const double*, const int*, const int*, const char*)’:
MCMC_Moments_NormalApprox_QR.cpp:180:14: warning: unused variable ‘one’ [-Wunused-variable]
  180 |   static int one = 1;
      |              ^~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MCMC_loglik_Zwork1_stres.cpp -o MCMC_loglik_Zwork1_stres.o
MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’:
MCMC_loglik_Zwork1_stres.cpp:476:17: warning: unused variable ‘s2’ [-Wunused-variable]
  476 |   static int s, s2, l;
      |                 ^~
MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’:
MCMC_loglik_Zwork1_stres.cpp:577:17: warning: unused variable ‘s2’ [-Wunused-variable]
  577 |   static int s, s2, l;
      |                 ^~
MCMC_loglik_Zwork1_stres.cpp:577:21: warning: unused variable ‘l’ [-Wunused-variable]
  577 |   static int s, s2, l;
      |                     ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Misc_findIndexOfPermutation.cpp -o Misc_findIndexOfPermutation.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Misc_generatePermutations.cpp -o Misc_generatePermutations.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_ChainsDerived.cpp -o NMix_ChainsDerived.o
NMix_ChainsDerived.cpp: In function ‘void NMix_ChainsDerived(double*, double*, int*, const int*, const double*, const int*, const double*, const double*, const double*, const int*, const int*)’:
NMix_ChainsDerived.cpp:37:11: warning: unused variable ‘dP’ [-Wunused-variable]
   37 |   double *dP;
      |           ^~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Deviance.cpp -o NMix_Deviance.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_MCMC.cpp -o NMix_MCMC.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_NMixRelabel.cpp -o NMix_NMixRelabel.o
NMix_NMixRelabel.cpp: In function ‘void NMix_NMixRelabel(const int*, const int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, double*, double*, double*, double*, double*, int*, double*, double*, int*, int*, int*)’:
NMix_NMixRelabel.cpp:212:11: warning: unused variable ‘hatPr_yP’ [-Wunused-variable]
  212 |   double *hatPr_yP = NULL;
      |           ^~~~~~~~
NMix_NMixRelabel.cpp:329:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized]
  329 |     switch (simpleType){
      |     ^~~~~~
NMix_NMixRelabel.cpp:207:7: note: ‘simpleType’ was declared here
  207 |   int simpleType;
      |       ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PED.cpp -o NMix_PED.o
NMix_PED.cpp: In function ‘void NMix_PED(double*, double*, double*, double*, int*, int*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const int*, const int*, const int*, const double*, const double*)’:
NMix_PED.cpp:56:15: warning: unused variable ‘fname’ [-Wunused-variable]
   56 |   const char *fname = "NMix_PED";
      |               ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PED_coreMulti.cpp -o NMix_PED_coreMulti.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PED_coreUni.cpp -o NMix_PED_coreUni.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PosterMeanMixParam.cpp -o NMix_PosterMeanMixParam.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Pr_y_and_cum_Pr_y.cpp -o NMix_Pr_y_and_cum_Pr_y.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredCDFMarg.cpp -o NMix_PredCDFMarg.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredCondDensCDFMarg.cpp -o NMix_PredCondDensCDFMarg.o
NMix_PredCondDensCDFMarg.cpp: In function ‘void NMix_PredCondDensCDFMarg(double*, double*, int*, const int*, const int*, const double*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’:
NMix_PredCondDensCDFMarg.cpp:70:17: warning: unused variable ‘wP’ [-Wunused-variable]
   70 |   const double *wP    = NULL;
      |                 ^~
NMix_PredCondDensCDFMarg.cpp:71:17: warning: unused variable ‘muP’ [-Wunused-variable]
   71 |   const double *muP   = NULL;
      |                 ^~~
NMix_PredCondDensCDFMarg.cpp:72:17: warning: unused variable ‘LiP’ [-Wunused-variable]
   72 |   const double *LiP   = NULL;
      |                 ^~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredCondDensJoint2.cpp -o NMix_PredCondDensJoint2.o
NMix_PredCondDensJoint2.cpp: In function ‘void NMix_PredCondDensJoint2(double*, double*, int*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’:
NMix_PredCondDensJoint2.cpp:56:17: warning: unused variable ‘wP’ [-Wunused-variable]
   56 |   const double *wP    = NULL;
      |                 ^~
NMix_PredCondDensJoint2.cpp:57:17: warning: unused variable ‘muP’ [-Wunused-variable]
   57 |   const double *muP   = NULL;
      |                 ^~~
NMix_PredCondDensJoint2.cpp:58:17: warning: unused variable ‘LiP’ [-Wunused-variable]
   58 |   const double *LiP   = NULL;
      |                 ^~~
NMix_PredCondDensJoint2.cpp:96:27: warning: ‘lcgrid’ may be used uninitialized [-Wmaybe-uninitialized]
   96 |   int ldens = (lgrid + 1) * lcgrid;
      |               ~~~~~~~~~~~~^~~~~~~~
NMix_PredCondDensJoint2.cpp:72:7: note: ‘lcgrid’ was declared here
   72 |   int lcgrid;
      |       ^~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredDA.cpp -o NMix_PredDA.o
NMix_PredDA.cpp: In function ‘void NMix_PredDA(const double*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, double*, int*, int*, double*, int*)’:
NMix_PredDA.cpp:39:13: warning: unused variable ‘debug’ [-Wunused-variable]
   39 |   const int debug = 0;
      |             ^~~~~
NMix_PredDA.cpp:40:15: warning: unused variable ‘fname’ [-Wunused-variable]
   40 |   const char *fname = "NMix_PredDA";
      |               ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredDensJoint2.cpp -o NMix_PredDensJoint2.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_PredDensMarg.cpp -o NMix_PredDensMarg.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMC_aux_vector_u.cpp -o NMix_RJMCMC_aux_vector_u.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMC_logJacLambdaVSigma.cpp -o NMix_RJMCMC_logJacLambdaVSigma.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMC_logJac_part3.cpp -o NMix_RJMCMC_logJac_part3.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMCbirth.cpp -o NMix_RJMCMCbirth.o
NMix_RJMCMCbirth.cpp: In function ‘void NMix::RJMCMCbirth(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’:
NMix_RJMCMCbirth.cpp:54:39: warning: variable ‘dwork_orderComp’ set but not used [-Wunused-but-set-variable]
   54 |   static double *dwork_misc, *Li4mu, *dwork_orderComp;
      |                                       ^~~~~~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMCcombine.cpp -o NMix_RJMCMCcombine.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMCdeath.cpp -o NMix_RJMCMCdeath.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_RJMCMCsplit.cpp -o NMix_RJMCMCsplit.o
NMix_RJMCMCsplit.cpp: In function ‘void NMix::RJMCMCsplit(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int**, double*, double*, double*, double*, int*, int*, const double*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, void (*)(double*, double*, const double*, const int*))’:
NMix_RJMCMCsplit.cpp:68:18: warning: variable ‘dlambdaV_dSigma’ set but not used [-Wunused-but-set-variable]
   68 |   static double *dlambdaV_dSigma;
      |                  ^~~~~~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Stephens_costMatrix.cpp -o NMix_Stephens_costMatrix.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Stephens_step1.cpp -o NMix_Stephens_step1.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Stephens_step2_search.cpp -o NMix_Stephens_step2_search.o
NMix_Stephens_step2_search.cpp: In function ‘void NMix::Stephens_step2_search(int*, int*, int*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*)’:
NMix_Stephens_step2_search.cpp:37:37: warning: unused variable ‘pij_q’ [-Wunused-variable]
   37 |   static double minLoss, Loss, pij, pij_q;
      |                                     ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Stephens_step2_transport.cpp -o NMix_Stephens_step2_transport.o
NMix_Stephens_step2_transport.cpp: In function ‘void NMix::Stephens_step2_transport(int*, int*, int*, double*, double*, int*, double*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*)’:
NMix_Stephens_step2_transport.cpp:37:15: warning: variable ‘orderP’ set but not used [-Wunused-but-set-variable]
   37 |   static int *orderP, *rankP;
      |               ^~~~~~
NMix_Stephens_step2_transport.cpp:37:24: warning: variable ‘rankP’ set but not used [-Wunused-but-set-variable]
   37 |   static int *orderP, *rankP;
      |                        ^~~~~
NMix_Stephens_step2_transport.cpp:39:17: warning: unused variable ‘minLoss’ [-Wunused-variable]
   39 |   static double minLoss[1];
      |                 ^~~~~~~
NMix_Stephens_step2_transport.cpp:40:14: warning: unused variable ‘lp_status’ [-Wunused-variable]
   40 |   static int lp_status[1];
      |              ^~~~~~~~~
NMix_Stephens_step2_transport.cpp:42:17: warning: unused variable ‘IZERO’ [-Wunused-variable]
   42 |   static int    IZERO[1] = {0};
      |                 ^~~~~
NMix_Stephens_step2_transport.cpp:43:17: warning: unused variable ‘DZERO’ [-Wunused-variable]
   43 |   static double DZERO[1] = {0};
      |                 ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_Utils.cpp -o NMix_Utils.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_fullCondMean_WeightsMeansVars.cpp -o NMix_fullCondMean_WeightsMeansVars.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_orderComp.cpp -o NMix_orderComp.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_reorder_Pr_y.cpp -o NMix_reorder_Pr_y.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_sum_Ir.cpp -o NMix_sum_Ir.o
NMix_sum_Ir.cpp: In function ‘void NMix::sum_Ir(int*, const int*, const int*, const int*, const int*, const int*)’:
NMix_sum_Ir.cpp:26:17: warning: unused variable ‘j’ [-Wunused-variable]
   26 |   static int l, j, m;
      |                 ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_updateAlloc.cpp -o NMix_updateAlloc.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_updateCensObs.cpp -o NMix_updateCensObs.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_updateHyperVars.cpp -o NMix_updateHyperVars.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_updateMeansVars.cpp -o NMix_updateMeansVars.o
NMix_updateMeansVars.cpp: In function ‘void NMix::updateMeansVars_IC_homoscedastic(double*, double*, double*, double*, double*, int*, int*, double*, int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*)’:
NMix_updateMeansVars.cpp:477:38: warning: unused variable ‘log_detsP’ [-Wunused-variable]
  477 |   static double *QP, *SigmaP, *LiP, *log_detsP, *muP, *mixSSmP, *dP;
      |                                      ^~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_updateWeights.cpp -o NMix_updateWeights.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c NMix_update_sum_Ir_and_sum_Pr_y.cpp -o NMix_update_sum_Ir_and_sum_Pr_y.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rand_RotationMatrix.cpp -o Rand_RotationMatrix.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rand_SamplePair.cpp -o Rand_SamplePair.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Stat_BLA.cpp -o Stat_BLA.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Stat_Quantile.cpp -o Stat_Quantile.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mixAK.so 00mixAK_init.o AK_BLAS.o AK_BSTAT.o AK_LAPACK.o AK_Utils.o Dist_Dirichlet.o Dist_Discrete.o Dist_MVN.o Dist_MVT.o Dist_TMVN.o Dist_TNorm.o Dist_TmixMVN.o Dist_TmixNorm.o Dist_Wishart.o Dist_mixMVN.o Dist_mixNorm.o GLMM_Deviance.o GLMM_Deviance2.o GLMM_Deviance2Pr_obs.o GLMM_MCMC.o GLMM_NMixRelabel.o GLMM_PED.o GLMM_copy_shift_eta_meanY_Zresp.o GLMM_create_SZitZiS.o GLMM_create_SZitZiS_4longitDA.o GLMM_create_XtX.o GLMM_create_ZS.o GLMM_create_ZiS.o GLMM_dY_meanY.o GLMM_eta_fixed_random2eta_meanY.o GLMM_fitted_Bernoulli_Logit.o GLMM_fitted_Poisson_Log.o GLMM_linear_predictors.o GLMM_longitDA.o GLMM_longitDA2.o GLMM_longitPred_nmix_gauss.o GLMM_newData.o GLMM_scale_ZitZi.o GLMM_updateFixEf.o GLMM_updateHyperVars_eps.o GLMM_updateRanEf.o GLMM_updateRanEf_QR.o GLMM_updateVars_eps.o LogLik_Bernoulli_Logit.o LogLik_Gauss_Identity.o LogLik_Poisson_Log.o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox_QR.o MCMC_loglik_Zwork1_stres.o Misc_findIndexOfPermutation.o Misc_generatePermutations.o NMix_ChainsDerived.o NMix_Deviance.o NMix_MCMC.o NMix_NMixRelabel.o NMix_PED.o NMix_PED_coreMulti.o NMix_PED_coreUni.o NMix_PosterMeanMixParam.o NMix_Pr_y_and_cum_Pr_y.o NMix_PredCDFMarg.o NMix_PredCondDensCDFMarg.o NMix_PredCondDensJoint2.o NMix_PredDA.o NMix_PredDensJoint2.o NMix_PredDensMarg.o NMix_RJMCMC_aux_vector_u.o NMix_RJMCMC_logJacLambdaVSigma.o NMix_RJMCMC_logJac_part3.o NMix_RJMCMCbirth.o NMix_RJMCMCcombine.o NMix_RJMCMCdeath.o NMix_RJMCMCsplit.o NMix_Stephens_costMatrix.o NMix_Stephens_step1.o NMix_Stephens_step2_search.o NMix_Stephens_step2_transport.o NMix_Utils.o NMix_fullCondMean_WeightsMeansVars.o NMix_orderComp.o NMix_reorder_Pr_y.o NMix_sum_Ir.o NMix_updateAlloc.o NMix_updateCensObs.o NMix_updateHyperVars.o NMix_updateMeansVars.o NMix_updateWeights.o NMix_update_sum_Ir_and_sum_Pr_y.o Rand_RotationMatrix.o Rand_SamplePair.o Stat_BLA.o Stat_Quantile.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLSAMg6/R.INSTALL2f83e327e4e88e/mixAK/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixAK/00new/mixAK/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mixAK)
* installing *source* package ‘maotai’ ...
** this is package ‘maotai’ version ‘0.2.6’
** package ‘maotai’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyCWn9y/R.INSTALL2f83dc7d943191/maotai/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_WLvMF.cpp -o cpp_WLvMF.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_bmds.cpp -o cpp_bmds.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_casket.cpp -o cpp_casket.o
cpp_casket.cpp: In function ‘arma::mat cpp_sylvester(arma::mat, arma::mat, arma::mat)’:
cpp_casket.cpp:175:12: warning: ‘bool arma::syl(Mat<typename T1::elem_type>&, const Base<typename T1::elem_type, T1>&, const Base<typename T1::elem_type, T2>&, const Base<typename parent::elem_type, T2>&, const typename arma_blas_real_or_cx_only<typename T1::elem_type>::result*) [with T1 = Mat<double>; T2 = Mat<double>; T3 = Mat<double>; typename T1::elem_type = double; typename T1::elem_type = double; typename parent::elem_type = double; typename arma_blas_real_or_cx_only<typename T1::elem_type>::result = double; typename T1::elem_type = double]’ is deprecated: use sylvester() instead [-Wdeprecated-declarations]
  175 |   arma::syl(solution,A,B,C);
      |   ~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo:570,
                 from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32,
                 from cpp_casket.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_sylvester.hpp:67:1: note: declared here
   67 | syl
      | ^~~
cpp_casket.cpp: In function ‘arma::mat solve_lyapunov(arma::mat, arma::mat, arma::mat)’:
cpp_casket.cpp:183:12: warning: ‘bool arma::syl(Mat<typename T1::elem_type>&, const Base<typename T1::elem_type, T1>&, const Base<typename T1::elem_type, T2>&, const Base<typename parent::elem_type, T2>&, const typename arma_blas_real_or_cx_only<typename T1::elem_type>::result*) [with T1 = Mat<double>; T2 = Mat<double>; T3 = Mat<double>; typename T1::elem_type = double; typename T1::elem_type = double; typename parent::elem_type = double; typename arma_blas_real_or_cx_only<typename T1::elem_type>::result = double; typename T1::elem_type = double]’ is deprecated: use sylvester() instead [-Wdeprecated-declarations]
  183 |   arma::syl(solution, A, B, C);
      |   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_sylvester.hpp:67:1: note: declared here
   67 | syl
      | ^~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_mmds.cpp -o cpp_mmds.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_smacof.cpp -o cpp_smacof.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c evaluations.cpp -o evaluations.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_computations.cpp -o src_computations.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o maotai.so RcppExports.o cpp_WLvMF.o cpp_bmds.o cpp_casket.o cpp_mmds.o cpp_smacof.o evaluations.o src_computations.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyCWn9y/R.INSTALL2f83dc7d943191/maotai/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-maotai/00new/maotai/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maotai)
begin installing package ‘Rdimtools’
* installing *source* package ‘lcmm’ ...
** this is package ‘lcmm’ version ‘2.2.1’
** package ‘lcmm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDNtpVh/R.INSTALL2f83df1154350c/lcmm/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c runiran.c -o runiran.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  compute.f90 -o compute.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  hetmixOrd.f90 -o hetmixOrd.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  hetmixlin.f90 -o hetmixlin.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  hetmixCont.f90 -o hetmixCont.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  Jointhet.f90 -o Jointhet.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  calculusTransfo.f90 -o calculusTransfo.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  predictCont.f90 -o predictCont.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  predictMult.f90 -o predictMult.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  postprob2.f90 -o postprob2.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  cvpl.f90 -o cvpl.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  predictYcond.f90 -o predictYcond.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  mpjhet.f90 -o mpjhet.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  hetmixMult.f90 -o hetmixMult.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  iteminfo.f90 -o iteminfo.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  Integ.f90 -o Integ.o
Integ.f90:23:27:

   23 |   integer :: ier, nmoins, kk, nvarprob, ncg, ncssg, nea, nef, nvc, nprob
      |                           1~
Warning: Unused variable ‘kk’ declared at (1) [-Wunused-variable]
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lcmm.so init.o runiran.o compute.o hetmixOrd.o hetmixlin.o hetmixCont.o Jointhet.o calculusTransfo.o predictCont.o predictMult.o postprob2.o cvpl.o predictYcond.o mpjhet.o hetmixMult.o iteminfo.o Integ.o -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDNtpVh/R.INSTALL2f83df1154350c/lcmm/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lcmm/00new/lcmm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lcmm)
* installing *source* package ‘Rdimtools’ ...
** this is package ‘Rdimtools’ version ‘1.1.2’
** package ‘Rdimtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1KOOh6/R.INSTALL2f8c8b60e936be/Rdimtools/src'
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppExports.cpp:4:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rdimtools_auxiliary.cpp -o Rdimtools_auxiliary.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from Rdimtools_auxiliary.cpp:17:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab(const arma::mat&, const arma::colvec&, arma::colvec&, double, int, const arma::mat&)’:
Rdimtools_auxiliary.cpp:652:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
  652 |   double resid = 0;
      |          ^~~~~
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab_sparse(arma::sp_mat, arma::sp_mat, arma::colvec&, double, int, arma::sp_mat)’:
Rdimtools_auxiliary.cpp:769:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
  769 |   double resid = 0;
      |          ^~~~~
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c example_class.cpp -o example_class.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from example_class.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
example_class.cpp: In member function ‘arma::mat ClNLproc::MainFunc(arma::mat&)’:
example_class.cpp:31:9: warning: unused variable ‘N’ [-Wunused-variable]
   31 |     int N = X.n_rows;
      |         ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_estimation.cpp -o methods_estimation.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from methods_estimation.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_handytools.cpp -o methods_handytools.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from methods_handytools.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_linear.cpp -o methods_linear.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from methods_linear.cpp:26:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
methods_linear.cpp: In function ‘arma::vec method_spufs(arma::mat&, arma::mat, double, double, double)’:
methods_linear.cpp:780:13: warning: unused variable ‘n’ [-Wunused-variable]
  780 |   const int n = X.n_rows;
      |             ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_nonlinear.cpp -o methods_nonlinear.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include/RcppDist.h:26,
                 from methods_nonlinear.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
methods_nonlinear.cpp: In function ‘Rcpp::List main_bmds(arma::mat, arma::mat, double, double, double, int, double, bool, arma::vec)’:
methods_nonlinear.cpp:836:7: warning: unused variable ‘accept’ [-Wunused-variable]
  836 |   int accept = 0;
      |       ^~~~~~
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_computation.cpp -o ver1_computation.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ver1_computation.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
ver1_computation.cpp: In function ‘arma::mat v2aux_pca(arma::mat&, int)’:
ver1_computation.cpp:12:7: warning: unused variable ‘P’ [-Wunused-variable]
   12 |   int P = X.n_cols;
      |       ^
ver1_computation.cpp: In function ‘arma::mat v2aux_pdist(arma::mat&)’:
ver1_computation.cpp:30:7: warning: unused variable ‘P’ [-Wunused-variable]
   30 |   int P = X.n_cols;
      |       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_feature.cpp -o ver1_feature.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ver1_feature.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_linear.cpp -o ver1_linear.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ver1_linear.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_nonlinear.cpp -o ver1_nonlinear.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ver1_nonlinear.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_mmds(arma::mat&, int, int, double)’:
ver1_nonlinear.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   98 |   if ((ndim < 1)||(ndim >= X.n_cols)){
      |                    ~~~~~^~~~~~~~~~~
ver1_nonlinear.cpp:97:7: warning: unused variable ‘P’ [-Wunused-variable]
   97 |   int P = X.n_cols;
      |       ^
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_rpca(arma::mat&, double, double, int, double)’:
ver1_nonlinear.cpp:394:7: warning: unused variable ‘N’ [-Wunused-variable]
  394 |   int N = X.n_rows;
      |       ^
ver1_nonlinear.cpp:395:7: warning: unused variable ‘P’ [-Wunused-variable]
  395 |   int P = X.n_cols;
      |       ^
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_utility.cpp -o ver1_utility.o
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ver1_utility.cpp:1:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-15 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rdimtools.so RcppExports.o Rdimtools_auxiliary.o example_class.o methods_estimation.o methods_handytools.o methods_linear.o methods_nonlinear.o ver1_computation.o ver1_feature.o ver1_linear.o ver1_nonlinear.o ver1_utility.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1KOOh6/R.INSTALL2f8c8b60e936be/Rdimtools/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdimtools/00new/Rdimtools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rdimtools)

checking mclustcomp_0.3.5.tar.gz ...
checking T4cluster_0.1.2.tar.gz ...
checking Rdimtools_1.1.2.tar.gz ...
checking latrend_1.6.2.tar.gz ...

Depends:
Package: mclustcomp
  Imports: Rcpp, Rdpack
  LinkingTo: Rcpp, RcppArmadillo

Timings:
             user system elapsed
mclustcomp 29.668  3.957  34.102

Results:
Check status summary:
                  WARNING NOTE OK
  Source packages       0    1  0
  Reverse depends       2    0  1

Check results summary:
mclustcomp ... NOTE
* checking CRAN incoming feasibility ... [5s/5s] NOTE
rdepends_latrend ... OK
rdepends_Rdimtools ... WARNING
* checking whether package ‘Rdimtools’ can be installed ... [113s/113s] WARNING
* checking C++ specification ... NOTE
* checking Rd files ... [5s/5s] NOTE
rdepends_T4cluster ... WARNING
* checking whether package ‘T4cluster’ can be installed ... [90s/91s] WARNING
* checking C++ specification ... NOTE