* using log directory ‘/srv/hornik/tmp/CRAN/mbbe.Rcheck’
* using R Under development (unstable) (2023-10-16 r85339)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘mbbe/DESCRIPTION’ ... OK
* this is package ‘mbbe’ version ‘0.0.0.9000’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Mark Sale <mark.sale@certara.com>’

New submission

Version contains large components (0.0.0.9000)

Possibly misspelled words in DESCRIPTION:
  AUCinf (23:87)
  AUClast (23:75)
  Cmax (23:69)
  MBBE (22:65)
  NONMEM (21:27, 21:45)

Found the following (possibly) invalid URLs:
  URL: Aoki,%20Y.,%20Röshammar,%20D.,%20Hamrén,%20B.%20et%20al.%20Model%20selection%20and%20averaging%20of%20nonlinear%20mixed-effect%20models%20for%20robust%20phase%20III%20dose%20selection.%20J%20Pharmacokinet%20Pharmacodyn%2044,%20581–597%20(2017).%20https://doi.org/10.1007/s10928-017-9550-0
    From: inst/doc/Introduction.html
    Message: Invalid URI scheme
  URL: https://cran.r-project.org/web/packages/replicateBE/replicateBE.pdf
    From: inst/doc/Introduction.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  The canonical URL of the CRAN page for a package is 
    https://CRAN.R-project.org/package=pkgname
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘mbbe’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
check_requirements: no visible global function definition for
  ‘packageVersion’
getNCA: no visible binding for global variable ‘PERIOD’
Undefined global functions or variables:
  PERIOD packageVersion
Consider adding
  importFrom("utils", "packageVersion")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] ERROR
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(mbbe)
  > 
  > test_check("mbbe")
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-calc_NCA.R:18:3'): calc_NCA works ──────────────────────────────
  Error in `file(file, "rt")`: cannot open the connection
  Backtrace:
      ▆
   1. └─utils::read.csv(file.path(run_dir, "MBBEsim1", "NCAresults1.csv")) at test-calc_NCA.R:18:2
   2.   └─utils::read.table(...)
   3.     └─base::file(file, "rt")
  
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 10 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs