library(matrixTests) source("utils/capture.r") #--- removing NA groups -------------------------------------------------------- wrn <- '2 columns dropped due to missing group information' # 2 NAs x <- 1:10 g <- c(1,1,1,1,NA,NA,2,2,2,2) res <- capture(row_waerden(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$obs.tot, 8)) stopifnot(all.equal(res$value$obs.groups, 2)) #--- less than 2 observations -------------------------------------------------- wrn <- 'row_waerden: 1 of the rows had less than 2 total observations.\nFirst occurrence at row 1' nacolumns <- c("df", "statistic", "pvalue") # one value one group res <- capture(row_waerden(1, "a")) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 1)) stopifnot(all.equal(res$value$obs.tot, 1)) # one value one group with NAs res <- capture(row_waerden(c(1,NA,NA,NA), c(1,1,2,2))) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 1)) stopifnot(all.equal(res$value$obs.tot, 1)) #--- less than 2 groups -------------------------------------------------------- wrn <- 'row_waerden: 1 of the rows had less than 2 groups with enough observations.\nFirst occurrence at row 1' nacolumns <- c("df", "statistic", "pvalue") # single group with 10 observations res <- capture(row_waerden(1:10, rep(1,10))) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 1)) stopifnot(all.equal(res$value$obs.tot, 10)) # 3 groups but others have only NA values x <- c(1:8, NA, NA) g <- c(rep("a", 8), "b", "c") res <- capture(row_waerden(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 1)) stopifnot(all.equal(res$value$obs.tot, 8)) #--- single unique value ------------------------------------------------------- wrn <- 'row_waerden: 1 of the rows had essentially constant values.\nFirst occurrence at row 1' nacolumns <- c("df", "statistic", "pvalue") # two groups res <- capture(row_waerden(rep(1, 3), c("a","a","b"))) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 2)) stopifnot(all.equal(res$value$obs.tot, 3)) # two groups with NA values x <- c(rep(1,8),NA,NA) g <- c(rep("a", 4), rep("b", 4), "c", "d") res <- capture(row_waerden(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.groups, 2)) stopifnot(all.equal(res$value$obs.tot, 8))