library(matrixTests) source("utils/capture.r") #--- removing na groups -------------------------------------------------------- wrn <- '2 columns dropped due to missing group information' # 2 NAs x <- 1:10 g <- c(1,1,1,1,NA,NA,2,2,2,2) res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$obs.tot, 8)) stopifnot(all.equal(res$value$obs.groups, 2)) #--- groups with one observations ---------------------------------------------- # TODO: In order to be consistent with tests that remove empty groups either: # 1) Only show this warning in cases where group with 1 observation is removed. # 2) Make other tests show similar warnings where empty groups are removed. wrn <- 'row_oneway_welch: 1 of the rows had groups with less than 2 observations: those groups were removed.\nFirst occurrence at row 1' # 3 groups with one having only one observation x <- 1:5 g <- c("a","a","b","b","c") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$obs.tot, 4)) stopifnot(all.equal(res$value$obs.groups, 2)) # 3 groups with 1 having one observation due to NA values x <- c(1:4, NA, 1) g <- c("a","a","b","b","c","c") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$obs.tot, 4)) stopifnot(all.equal(res$value$obs.groups, 2)) #--- less than 2 groups -------------------------------------------------------- wrn <- 'row_oneway_welch: 1 of the rows had less than 2 groups with enough observations.\nFirst occurrence at row 1' nacolumns <- c("df.between", "df.within", "statistic", "pvalue") # all values in one group x <- 1:10 g <- rep("a", 10) res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 10)) stopifnot(all.equal(res$value$obs.groups, 1)) # many groups but all have one observation x <- 1:10 g <- letters[1:10] res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 0)) stopifnot(all.equal(res$value$obs.groups, 0)) # two groups but one has only a single observation and is removed x <- 1:4 g <- c("a","a","a","b") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 3)) stopifnot(all.equal(res$value$obs.groups, 1)) # two groups but one has only NAs x <- c(1:3, NA, NA, NA) g <- rep(c("a","b"), each=3) res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 3)) stopifnot(all.equal(res$value$obs.groups, 1)) #--- all groups have zero variance --------------------------------------------- wrn <- 'row_oneway_welch: 1 of the rows had zero variance in all of the groups.\nFirst occurrence at row 1' nacolumns <- c("df.between", "df.within", "statistic", "pvalue") # two groups - all values are constant x <- c(1,1,1,1) g <- c("a","a","b","b") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 4)) stopifnot(all.equal(res$value$obs.groups, 2)) # two groups - constant values within each group x <- c(3,3,0,0) g <- c("a","a","b","b") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 4)) stopifnot(all.equal(res$value$obs.groups, 2)) # two groups - constant values plus NA within each group x <- c(3,3,NA,0,0,NA) g <- c("a","a","a","b","b","b") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all(is.na(res$value[,nacolumns]))) stopifnot(all.equal(res$value$obs.tot, 4)) stopifnot(all.equal(res$value$obs.groups, 2)) #--- one of the groups has zero variance --------------------------------------- wrn <- 'row_oneway_welch: 1 of the rows had groups with zero variance: result might be unreliable.\nFirst occurrence at row 1' # two groups - one with constant values x <- c(1,2,1,1) g <- c("a","a","b","b") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$statistic, Inf)) # three groups - constant values within two of them x <- c(1,2,3,3,5,5) g <- c("a","a","b","b","c","c") res <- capture(row_oneway_welch(x, g)) stopifnot(all.equal(res$warning, wrn)) stopifnot(all.equal(res$value$statistic, Inf))