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Type 'q()' to quit R. > library(matrixTests) > source("utils/capture.r") > > #--- removing na groups -------------------------------------------------------- > > wrn <- '2 columns dropped due to missing group information' > > # 2 NAs > x <- 1:10 > g <- c(1,1,1,1,NA,NA,2,2,2,2) > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all.equal(res$value$obs.tot, 8)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > > #--- groups with one observations ---------------------------------------------- > > # TODO: In order to be consistent with tests that remove empty groups either: > # 1) Only show this warning in cases where group with 1 observation is removed. > # 2) Make other tests show similar warnings where empty groups are removed. > wrn <- 'row_oneway_welch: 1 of the rows had groups with less than 2 observations: those groups were removed.\nFirst occurrence at row 1' > > # 3 groups with one having only one observation > x <- 1:5 > g <- c("a","a","b","b","c") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all.equal(res$value$obs.tot, 4)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > # 3 groups with 1 having one observation due to NA values > x <- c(1:4, NA, 1) > g <- c("a","a","b","b","c","c") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all.equal(res$value$obs.tot, 4)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > > #--- less than 2 groups -------------------------------------------------------- > > wrn <- 'row_oneway_welch: 1 of the rows had less than 2 groups with enough observations.\nFirst occurrence at row 1' > nacolumns <- c("df.between", "df.within", "statistic", "pvalue") > > # all values in one group > x <- 1:10 > g <- rep("a", 10) > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 10)) > stopifnot(all.equal(res$value$obs.groups, 1)) > > # many groups but all have one observation > x <- 1:10 > g <- letters[1:10] > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 0)) > stopifnot(all.equal(res$value$obs.groups, 0)) > > # two groups but one has only a single observation and is removed > x <- 1:4 > g <- c("a","a","a","b") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 3)) > stopifnot(all.equal(res$value$obs.groups, 1)) > > # two groups but one has only NAs > x <- c(1:3, NA, NA, NA) > g <- rep(c("a","b"), each=3) > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 3)) > stopifnot(all.equal(res$value$obs.groups, 1)) > > > #--- all groups have zero variance --------------------------------------------- > > wrn <- 'row_oneway_welch: 1 of the rows had zero variance in all of the groups.\nFirst occurrence at row 1' > nacolumns <- c("df.between", "df.within", "statistic", "pvalue") > > # two groups - all values are constant > x <- c(1,1,1,1) > g <- c("a","a","b","b") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 4)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > # two groups - constant values within each group > x <- c(3,3,0,0) > g <- c("a","a","b","b") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 4)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > # two groups - constant values plus NA within each group > x <- c(3,3,NA,0,0,NA) > g <- c("a","a","a","b","b","b") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all(is.na(res$value[,nacolumns]))) > stopifnot(all.equal(res$value$obs.tot, 4)) > stopifnot(all.equal(res$value$obs.groups, 2)) > > > #--- one of the groups has zero variance --------------------------------------- > > wrn <- 'row_oneway_welch: 1 of the rows had groups with zero variance: result might be unreliable.\nFirst occurrence at row 1' > > # two groups - one with constant values > x <- c(1,2,1,1) > g <- c("a","a","b","b") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all.equal(res$value$statistic, Inf)) > > # three groups - constant values within two of them > x <- c(1,2,3,3,5,5) > g <- c("a","a","b","b","c","c") > res <- capture(row_oneway_welch(x, g)) > stopifnot(all.equal(res$warning, wrn)) > stopifnot(all.equal(res$value$statistic, Inf)) > > > proc.time() user system elapsed 0.14 0.06 0.20