R Under development (unstable) (2024-09-06 r87103 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library("matrixStats")
> 
> rowCounts_R <- function(x, value = TRUE, na.rm = FALSE, ...) {
+   if (is.na(value)) {
+     counts <- apply(x, MARGIN = 1L, FUN = function(x)
+       sum(is.na(x))
+     )
+   } else {
+     counts <- apply(x, MARGIN = 1L, FUN = function(x)
+       sum(x == value, na.rm = na.rm)
+     )
+   }
+   # Preserve names attribute
+   names <- names(counts)  
+   counts <- as.integer(counts)
+   if (isTRUE(useNames) && !is.null(names)) names(counts) <- names
+   counts
+ }
> 
> 
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> # Data type: integer and numeric
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> for (mode in c("integer", "double")) {
+   x <- matrix(runif(10 * 5, min = -3, max = 3), nrow = 10L, ncol = 5L)
+   x[sample.int(length(x), size = 7L)] <- 0
+   storage.mode(x) <- mode
+   
+   dimnames = list(letters[1:10], LETTERS[1:5])
+   
+   # Test with and without dimnames on x
+   for (setDimnames in c(TRUE, FALSE)) {
+     if (setDimnames) dimnames(x) <- dimnames
+     else dimnames(x) <- NULL    
+     for (na.rm in c(FALSE, TRUE)) {
+       # Check names attribute
+       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
+         # Count zeros
+         r0 <- rowCounts_R(x, value = 0, na.rm = na.rm, useNames = useNames)
+         r1 <- rowCounts(x, value = 0, na.rm = na.rm, useNames = useNames)
+         r2 <- colCounts(t(x), value = 0, na.rm = na.rm, useNames = useNames)
+         stopifnot(identical(r1, r0))
+         stopifnot(identical(r2, r0))
+         
+         # Count NAs
+         r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
+         r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
+         r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
+         stopifnot(identical(r1, r0))
+         stopifnot(identical(r2, r0))
+         
+         if (mode == "integer") {
+           ux <- unique(as.vector(x))
+           r0 <- r1 <- r2 <- integer(nrow(x))
+           for (value in ux) {
+             r0 <- r0 + rowCounts_R(x, value = value, na.rm = na.rm, useNames = useNames)
+             r1 <- r1 + rowCounts(x, value = value, na.rm = na.rm, useNames = useNames)
+             r2 <- r2 + colCounts(t(x), value = value, na.rm = na.rm, useNames = useNames)
+             stopifnot(identical(r1, r0))
+             stopifnot(identical(r2, r0))
+           }
+           stopifnot(all(r0 == ncol(x)))
+         } # if (mode == "integer")
+       } # for (useNames ...)
+     } # for (na.rm ...)
+   } # for (setDimnames ...)
+ } # for (mode ...)
> 
> 
> # All NAs
> na_list <- list(NA_integer_, NA_real_, NaN)
> for (na_value in na_list) {
+   x <- matrix(na_value, nrow = 10L, ncol = 5L)
+   # Test with and without dimnames on x
+   for (setDimnames in c(TRUE, FALSE)) {
+     if (setDimnames) dimnames(x) <- dimnames
+     else dimnames(x) <- NULL    
+     for (na.rm in c(FALSE, TRUE)) {
+       # Check names attribute
+       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
+         r0 <- rowCounts_R(x, na.rm = na.rm, useNames = useNames)
+         r1 <- rowCounts(x, na.rm = na.rm, useNames = useNames)
+         r2 <- colCounts(t(x), na.rm = na.rm, useNames = useNames)
+         stopifnot(identical(r1, r0))
+         stopifnot(identical(r2, r0))
+         
+         # Count NAs
+         r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
+         r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
+         r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
+         stopifnot(all(r0 == ncol(x)))
+         stopifnot(identical(r1, r0))
+         stopifnot(identical(r2, r0))
+       }
+     }
+   }
+ } # for (na_value ...)
> 
> 
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> # Data type: logical
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> x <- matrix(FALSE, nrow = 10L, ncol = 4L)
> x[7:8, 2:3] <- TRUE
> x[1:3, ] <- TRUE
> x[, 1] <- TRUE
> x[4, ] <- FALSE
> x[, 4] <- FALSE
> x[2, ] <- FALSE
> x[3, ] <- TRUE
> 
> # To check names attribute
> dimnames <- list(letters[1:10], LETTERS[1:4])
> 
> # Test with and without dimnames on x
> for (setDimnames in c(TRUE, FALSE)) {
+   if (setDimnames) dimnames(x) <- dimnames
+   else dimnames(x) <- NULL
+   # Row/column counts
+   for (na.rm in c(FALSE, TRUE)) {
+     # Check names attribute
+     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
+       r0 <- rowCounts_R(x, na.rm = na.rm, useNames = useNames)
+       r1 <- rowCounts(x, na.rm = na.rm, useNames = useNames)
+       r2 <- colCounts(t(x), na.rm = na.rm, useNames = useNames)
+       stopifnot(identical(r1, r0))
+       stopifnot(identical(r2, r0))
+       
+       r_true <- rowCounts(x, value = TRUE, na.rm = na.rm, useNames = useNames)
+       r_false <- rowCounts(x, value = FALSE, na.rm = na.rm, useNames = useNames)
+       stopifnot(r_true + r_false == ncol(x))
+       
+       c_true <- colCounts(x, value = TRUE, na.rm = na.rm, useNames = useNames)
+       c_false <- colCounts(x, value = FALSE, na.rm = na.rm, useNames = useNames)
+       stopifnot(c_true + c_false == nrow(x))
+       
+       # Count NAs
+       r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
+       r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
+       r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
+       stopifnot(identical(r1, r0))
+       stopifnot(identical(r2, r0))
+     }
+   }
+ }
> 
> 
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> # Data type: character (not sure if this should be supported)
> # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
> x <- matrix(rep(letters, length.out = 10 * 5), nrow = 10L, ncol = 5L)
> x[2:3, 3:4] <- NA_character_
> 
> # Row/column counts
> for (na.rm in c(FALSE, TRUE)) {
+   for (value in c("g", NA_character_)) {
+     r0 <- rowCounts_R(x, value = value, na.rm = na.rm)
+     r1 <- rowCounts(x, value = value, na.rm = na.rm)
+     r2 <- colCounts(t(x), value = value, na.rm = na.rm)
+     stopifnot(identical(r1, r0))
+     stopifnot(identical(r2, r0))
+ 
+     c <- count(x[1, ], value = value, na.rm = na.rm)
+     stopifnot(identical(c, r1[1]))
+ 
+     c <- count(x[2, ], value = value, na.rm = na.rm)
+     stopifnot(identical(c, r1[2]))
+   }
+ }
> 
> # NA row
> x <- matrix(0, nrow = 2L, ncol = 2L)
> x[1, ] <- NA_integer_
> 
> dimnames <- list(letters[1:2], LETTERS[1:2])
> 
> # Test with and without dimnames on x
> for (setDimnames in c(TRUE, FALSE)) {
+   if (setDimnames) dimnames(x) <- dimnames
+   else dimnames(x) <- NULL    
+   # Check names attribute
+   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
+     r0 <- rowCounts(x, value = 0, useNames = useNames)
+     r1 <- rowCounts_R(x, value = 0, useNames = useNames)
+     stopifnot(identical(r0, r1))
+   }
+ }
> 
> proc.time()
   user  system elapsed 
   0.40    0.07    0.46