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Type 'q()' to quit R. > library("matrixStats") > > rowAlls_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) { + if (is.na(value)) { + res <- apply(is.na(x), MARGIN = 1L, FUN = all, na.rm = na.rm) + } else { + y <- x == value + + # Preserve dimnames attribute + dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0) + if (!isTRUE(all.equal(dim(y), dim))) { + dim(y) <- dim + dimnames(y) <- dimnames(x) + } + + res <- apply(y, MARGIN = 1L, FUN = all, na.rm = na.rm) + } + if (is.na(useNames) || !useNames) names(res) <- NULL + res + } > > rowAnys_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) { + if (is.na(value)) { + res <- apply(is.na(x), MARGIN = 1L, FUN = any, na.rm = na.rm) + } else { + y <- x == value + + # Preserve dimnames attribute + dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0) + if (!isTRUE(all.equal(dim(y), dim))) { + dim(y) <- dim + dimnames(y) <- dimnames(x) + } + + res <- apply(y, MARGIN = 1L, FUN = any, na.rm = na.rm) + } + if (is.na(useNames) || !useNames) names(res) <- NULL + res + } > > rowAnyMissings_R <- function(x, ..., useNames = NA) { + res <- apply(x, MARGIN = 1L, FUN = anyMissing) + if (is.na(useNames) || !useNames) names(res) <- NULL + res + } > > > all_R <- function(x, value = TRUE, ...) { + if (is.na(value)) { + all(is.na(x), ...) + } else { + all(x == value, ...) + } + } > > any_R <- function(x, value = TRUE, ...) { + if (is.na(value)) { + any(is.na(x), ...) + } else { + any(x == value, ...) + } + } > > > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > # Subsetted tests > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > source("utils/validateIndicesFramework.R") > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6) > storage.mode(x) <- "integer" > x[2:3, ] <- NA_integer_ > x[2, 1] <- 0L > x[4:5, ] <- 0L > x[4, 6] <- NA_integer_ > > # To check names attribute > dimnames <- list(letters[1:6], LETTERS[1:6]) > > # Test with and without dimnames on x > for (setDimnames in c(TRUE, FALSE)) { + if (setDimnames) dimnames(x) <- dimnames + else dimnames(x) <- NULL + + count <- 0L + for (rows in index_cases) { + for (cols in index_cases) { + count <- count + 1L + na.rm <- c(TRUE, FALSE)[count %% 2 + 1] + useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE) + useNames <- useNames[count %% length(useNames) + 1] + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = 0, na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = 0, na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = NA_integer_, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = 0, na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = 0, na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = NA_integer_, useNames = useNames) + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = 0, na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = 0, na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = NA_integer_, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = 0, na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = 0, na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = NA_integer_, useNames = useNames) + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnyMissings, + fsure = rowAnyMissings_R, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnyMissings, + fsure = rowAnyMissings_R, useNames = useNames) + } + } + } > > for (rr in seq_len(nrow(x))) { + for (idxs in index_cases) { + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = 0, na.rm = TRUE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = 0, na.rm = FALSE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = NA_integer_) + + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = 0, na.rm = TRUE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = 0, na.rm = FALSE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = NA_integer_) + } + } > > > storage.mode(x) <- "character" > # Test with and without dimnames on x > for (setDimnames in c(TRUE, FALSE)) { + if (setDimnames) dimnames(x) <- dimnames + else dimnames(x) <- NULL + for (rows in index_cases) { + for (cols in index_cases) { + # Check names attribute + for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) { + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = "0", na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = "0", na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAlls, fsure = rowAlls_R, + value = NA_character_, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = "0", na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = "0", na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAlls, fsure = rowAlls_R, + value = NA_character_, useNames = useNames) + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = "0", na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = "0", na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnys, fsure = rowAnys_R, + value = NA_character_, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = "0", na.rm = TRUE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = "0", na.rm = FALSE, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnys, fsure = rowAnys_R, + value = NA_character_, useNames = useNames) + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowAnyMissings, + fsure = rowAnyMissings_R, useNames = useNames) + validateIndicesTestMatrix(x, rows, cols, + fcoltest = colAnyMissings, + fsure = rowAnyMissings_R, useNames = useNames) + } + } + } + } > > for (rr in seq_len(nrow(x))) { + for (idxs in index_cases) { + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = "0", na.rm = TRUE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = "0", na.rm = FALSE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = allValue, fsure = all_R, + value = NA_integer_) + + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = "0", na.rm = TRUE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = "0", na.rm = FALSE) + validateIndicesTestVector(x[rr, ], idxs, + ftest = anyValue, fsure = any_R, + value = NA_integer_) + } + } > > proc.time() user system elapsed 9.12 0.20 9.34