* using log directory ‘/srv/hornik/tmp/CRAN_pretest/matrixStats.Rcheck’ * using R Under development (unstable) (2024-09-06 r87103) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘matrixStats/DESCRIPTION’ ... OK * this is package ‘matrixStats’ version ‘1.4.1’ * checking CRAN incoming feasibility ... [4s/4s] NOTE Maintainer: ‘Henrik Bengtsson ’ Days since last update: 3 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘matrixStats’ can be installed ... [12s/12s] OK * used C compiler: ‘Debian clang version 18.1.8 (9)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [69s/69s] OK Running ‘allocArray.R’ [0s/0s] Running ‘allocMatrix.R’ [0s/0s] Running ‘allocVector.R’ [0s/0s] Running ‘anyMissing.R’ [0s/0s] Running ‘anyMissing_subset.R’ [0s/0s] Running ‘benchmark.R’ [7s/7s] Running ‘binCounts.R’ [0s/0s] Running ‘binCounts_subset.R’ [0s/0s] Running ‘binMeans,binCounts.R’ [0s/0s] Running ‘binMeans,binCounts_subset.R’ [0s/0s] Running ‘count.R’ [0s/0s] Running ‘count_subset.R’ [0s/0s] Running ‘diff2.R’ [0s/0s] Running ‘diff2_subset.R’ [0s/0s] Running ‘indexByRow.R’ [0s/0s] Running ‘logSumExp.R’ [0s/0s] Running ‘logSumExp_subset.R’ [0s/0s] Running ‘mean2.R’ [0s/0s] Running ‘mean2_subset.R’ [0s/0s] Running ‘product.R’ [0s/0s] Running ‘product_subset.R’ [0s/0s] Running ‘psortKM.R’ [0s/0s] Running ‘rowAllAnys.R’ [0s/0s] Running ‘rowAllAnys_subset.R’ [4s/4s] Running ‘rowAvgsPerColSet.R’ [0s/0s] Running ‘rowAvgsPerColSet_subset.R’ [0s/0s] Running ‘rowCollapse.R’ [0s/0s] Running ‘rowCollapse_subset.R’ [0s/0s] Running ‘rowCounts.R’ [0s/0s] Running ‘rowCounts_subset.R’ [2s/2s] Running ‘rowCumMinMaxs.R’ [0s/0s] Running ‘rowCumMinMaxs_subset.R’ [1s/1s] Running ‘rowCumprods.R’ [0s/0s] Running ‘rowCumprods_subset.R’ [1s/1s] Running ‘rowCumsums.R’ [0s/0s] Running ‘rowCumsums_subset.R’ [1s/1s] Running ‘rowDiffs.R’ [0s/0s] Running ‘rowDiffs_subset.R’ [2s/2s] Running ‘rowIQRs.R’ [0s/0s] Running ‘rowIQRs_subset.R’ [1s/1s] Running ‘rowLogSumExps.R’ [0s/0s] Running ‘rowLogSumExps_subset.R’ [1s/1s] Running ‘rowMads.R’ [0s/0s] Running ‘rowMads_subset.R’ [1s/1s] Running ‘rowMeans2.R’ [0s/0s] Running ‘rowMeans2_subset.R’ [0s/0s] Running ‘rowMedians.R’ [0s/0s] Running ‘rowMedians_subset.R’ [0s/0s] Running ‘rowOrderStats.R’ [0s/0s] Running ‘rowOrderStats_subset.R’ [1s/1s] Running ‘rowProds.R’ [0s/0s] Running ‘rowProds_subset.R’ [1s/1s] Running ‘rowQuantiles.R’ [7s/7s] Running ‘rowQuantiles_subset.R’ [1s/1s] Running ‘rowRanges.R’ [1s/1s] Running ‘rowRanges_subset.R’ [1s/1s] Running ‘rowRanks.R’ [6s/6s] Running ‘rowRanks_subset.R’ [1s/1s] Running ‘rowSds.R’ [0s/0s] Running ‘rowSds_subset.R’ [1s/1s] Running ‘rowSums2.R’ [0s/0s] Running ‘rowSums2_subset.R’ [1s/1s] Running ‘rowTabulates.R’ [0s/0s] Running ‘rowTabulates_subset.R’ [1s/1s] Running ‘rowVarDiffs.R’ [0s/0s] Running ‘rowVarDiffs_mad,iqr_subset.R’ [4s/4s] Running ‘rowVarDiffs_var,sd_subset.R’ [3s/3s] Running ‘rowVars.R’ [0s/0s] Running ‘rowVars_subset.R’ [1s/1s] Running ‘rowWeightedMeans.R’ [0s/0s] Running ‘rowWeightedMeans_subset.R’ [1s/1s] Running ‘rowWeightedMedians.R’ [0s/0s] Running ‘rowWeightedMedians_subset.R’ [1s/1s] Running ‘rowWeightedVars.R’ [0s/0s] Running ‘rowWeightedVars_subset.R’ [2s/2s] Running ‘signTabulate.R’ [0s/0s] Running ‘signTabulate_subset.R’ [0s/0s] Running ‘sum2.R’ [0s/0s] Running ‘sum2_subset.R’ [0s/0s] Running ‘varDiff_etal.R’ [0s/0s] Running ‘varDiff_etal_subset.R’ [0s/0s] Running ‘weightedMean.R’ [0s/0s] Running ‘weightedMean_subset.R’ [0s/0s] Running ‘weightedMedian.R’ [0s/0s] Running ‘weightedMedian_subset.R’ [0s/0s] Running ‘weightedVar.R’ [0s/0s] Running ‘weightedVar_etal.R’ [0s/0s] Running ‘weightedVar_etal_subset.R’ [0s/0s] Running ‘x_OP_y.R’ [0s/0s] Running ‘x_OP_y_subset.R’ [3s/3s] Running ‘zzz.package-unload.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE