R Under development (unstable) (2023-11-06 r85483 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("matrixStats") > > rowRanks_R <- function(x, ties.method = "average", ..., useNames = NA) { + ans <- t(apply(x, MARGIN = 1L, FUN = rank, na.last = "keep", + ties.method = ties.method)) + + # Preserve dimnames attribute? + dim(ans) <- dim(x) + dimnames(ans) <- if (isTRUE(useNames)) dimnames(x) else NULL + + ans + } > > colRanks_R <- function(x, ties.method, preserveShape = FALSE, ..., useNames = NA) { + ans <- t(apply(x, MARGIN = 2L, FUN = rank, na.last = "keep", ties.method = ties.method)) + + # Preserve dimnames attribute? + tx <- t(x) + dim(ans) <- dim(tx) + dimnames(ans) <- if (isTRUE(useNames)) dimnames(tx) else NULL + + if (preserveShape) ans <- t(ans) + ans + } > > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > # Subsetted tests > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - > source("utils/validateIndicesFramework.R") > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6) > storage.mode(x) <- "integer" > > # To check dimnames attribute > dimnames <- list(letters[1:6], LETTERS[1:6]) > > colRanks_R_t <- function(x, rows, cols, ..., useNames = NA) { + t(colRanks(t(x), rows = cols, cols = rows, preserveShape = TRUE, ..., useNames = useNames)) + } > > # Test with and without dimnames on x > for (setDimnames in c(TRUE, FALSE)) { + if (setDimnames) dimnames(x) <- dimnames + else dimnames(x) <- NULL + + count <- 0L + for (rows in index_cases) { + for (cols in index_cases) { + count <- count + 1L + na.rm <- c(TRUE, FALSE)[count %% 2 + 1] + useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE) + useNames <- useNames[count %% length(useNames) + 1] + + validateIndicesTestMatrix(x, rows, cols, + ftest = rowRanks, fsure = rowRanks_R, + ties.method = "average", useNames = useNames) + + validateIndicesTestMatrix(x, rows, cols, + ftest = colRanks_R_t, fsure = rowRanks_R, + ties.method = "average", useNames = useNames) + + for (perserveShape in c(TRUE, FALSE)) { + validateIndicesTestMatrix(x, rows, cols, + ftest = colRanks, fsure = colRanks_R, + ties.method = "average", perserveShape = perserveShape, + useNames = useNames) + } + } + } + } > > proc.time() user system elapsed 1.42 0.07 1.46