* installing *source* package ‘matrixCorr’ ... ** this is package ‘matrixCorr’ version ‘0.5.1’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’ clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c biweight_mid_corr.cpp -o biweight_mid_corr.o In file included from biweight_mid_corr.cpp:14: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c bland_altman.cpp -o bland_altman.o In file included from bland_altman.cpp:9: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c bland_altman_repeated.cpp -o bland_altman_repeated.o In file included from bland_altman_repeated.cpp:13: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c ccc_repeated.cpp -o ccc_repeated.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c ccc_repeated_helper.cpp -o ccc_repeated_helper.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c ccc_repeated_mixed_model.cpp -o ccc_repeated_mixed_model.o In file included from ccc_repeated_mixed_model.cpp:17: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ ccc_repeated_mixed_model.cpp:950:15: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 950 | auto kp = unit_kappas(times_obs); | ^ ccc_repeated_mixed_model.cpp:947:13: note: previous statement is here 947 | for (size_t k = 0; k < tim_i.size(); ++k) | ^ ccc_repeated_mixed_model.cpp:962:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 962 | auto kp = unit_kappas(times_obs); | ^ ccc_repeated_mixed_model.cpp:959:11: note: previous statement is here 959 | for (size_t k = 0; k < tim_i.size(); ++k) | ^ ccc_repeated_mixed_model.cpp:1265:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1265 | if ((int)idx.size() <= 1) continue; | ^ ccc_repeated_mixed_model.cpp:1263:9: note: previous statement is here 1263 | for (int k = 0; k < n_i; ++k) | ^ 4 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c concordance_corr.cpp -o concordance_corr.o In file included from concordance_corr.cpp:4: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ concordance_corr.cpp:23:13: warning: unused variable 'n' [-Wunused-variable] 23 | const int n = X.n_rows; | ^ 2 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c distance_correlation.cpp -o distance_correlation.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c kendall_corr.cpp -o kendall_corr.o In file included from kendall_corr.cpp:8: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c partial_correlation.cpp -o partial_correlation.o In file included from partial_correlation.cpp:8: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c pearson.cpp -o pearson.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c schafer_strimmer_shrinkage_correlation.cpp -o schafer_strimmer_shrinkage_correlation.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c spearman.cpp -o spearman.o In file included from spearman.cpp:4: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ 1 warning generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c tetrachoric.cpp -o tetrachoric.o In file included from tetrachoric.cpp:10: ./matrixCorr_detail.h:1179:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 1179 | int s = 0; | ^ ./matrixCorr_detail.h:1175:5: note: previous statement is here 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^ tetrachoric.cpp:70:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 70 | if (tot <= 0) stop("Empty table"); | ^ tetrachoric.cpp:64:3: note: previous statement is here 64 | for (int i=0;i alpha, beta; | ^ tetrachoric.cpp:177:5: note: previous statement is here 177 | for (int j=0;j