* installing *source* package 'matrixCorr' ... ** this is package 'matrixCorr' version '0.11.1' ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs specified C++17 using C++ compiler: 'g++.exe (GCC) 14.3.0' using C++17 g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from RcppExports.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c biweight_mid_corr.cpp -o biweight_mid_corr.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from biweight_mid_corr.cpp:5: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bland_altman.cpp -o bland_altman.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from bland_altman.cpp:2: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bland_altman_repeated.cpp -o bland_altman_repeated.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from bland_altman_repeated.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated.cpp -o ccc_repeated.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from ccc_repeated.cpp:2: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated_helper.cpp -o ccc_repeated_helper.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from ccc_repeated_helper.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated_mixed_model.cpp -o ccc_repeated_mixed_model.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from ccc_repeated_mixed_model.cpp:3: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c concordance_corr.cpp -o concordance_corr.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from concordance_corr.cpp:2: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distance_correlation.cpp -o distance_correlation.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from distance_correlation.cpp:5: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c icc.cpp -o icc.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from icc.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kendall_corr.cpp -o kendall_corr.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from kendall_corr.cpp:3: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c partial_correlation.cpp -o partial_correlation.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from partial_correlation.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pearson.cpp -o pearson.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from pearson.cpp:3: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rmcorr.cpp -o rmcorr.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from rmcorr.cpp:5: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c robust_correlations.cpp -o robust_correlations.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from robust_correlations.cpp:5: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c schafer_strimmer_shrinkage_correlation.cpp -o schafer_strimmer_shrinkage_correlation.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from schafer_strimmer_shrinkage_correlation.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spearman.cpp -o spearman.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from spearman.cpp:2: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tetrachoric.cpp -o tetrachoric.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from tetrachoric.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -include matrixCorr_r_api_compat.h -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c validate_corr_input.cpp -o validate_corr_input.o In file included from : ./matrixCorr_r_api_compat.h:27:13: warning: 'R_UnboundValue' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes] 27 | extern SEXP R_UnboundValue; | ^~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/RcppCommon.h:29, from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:27, from validate_corr_input.cpp:4: D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -shared -s -static-libgcc -o matrixCorr.dll tmp.def RcppExports.o biweight_mid_corr.o bland_altman.o bland_altman_repeated.o ccc_repeated.o ccc_repeated_helper.o ccc_repeated_mixed_model.o concordance_corr.o distance_correlation.o icc.o kendall_corr.o partial_correlation.o pearson.o rmcorr.o robust_correlations.o schafer_strimmer_shrinkage_correlation.o spearman.o tetrachoric.o validate_corr_input.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-matrixCorr/00new/matrixCorr/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixCorr)