* installing *source* package ‘markovchain’ ...
** this is package ‘markovchain’ version ‘0.10.3’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c classesAndMethods.cpp -o classesAndMethods.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c ctmcClassesAndMethods.cpp -o ctmcClassesAndMethods.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c ctmcFittingFunctions.cpp -o ctmcFittingFunctions.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c ctmcProbabilistic.cpp -o ctmcProbabilistic.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c fitHigherOrder.cpp -o fitHigherOrder.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c fittingFunctions.cpp -o fittingFunctions.o
In file included from fittingFunctions.cpp:6:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:11:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_unordered_set.h:23:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long long>::converter<const volatile long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:434:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long long>::operator long long' requested here
  434 | __TBB_DECL_ATOMIC(__TBB_LONG_LONG)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long long>::converter<const volatile unsigned long long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:435:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long long>::operator unsigned long long' requested here
  435 | __TBB_DECL_ATOMIC(unsigned __TBB_LONG_LONG)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<long>::converter<const volatile long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:439:1: note: in instantiation of member function 'tbb::internal::atomic_impl<long>::operator long' requested here
  439 | __TBB_DECL_ATOMIC(long)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned long' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned long>::converter<const volatile unsigned long>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned long]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:440:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned long>::operator unsigned long' requested here
  440 | __TBB_DECL_ATOMIC(unsigned long)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned int>::converter<const volatile unsigned int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:466:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned int>::operator unsigned int' requested here
  466 | __TBB_DECL_ATOMIC(unsigned)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile int' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<int>::converter<const volatile int>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile int]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:467:1: note: in instantiation of member function 'tbb::internal::atomic_impl<int>::operator int' requested here
  467 | __TBB_DECL_ATOMIC(int)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned short>::converter<const volatile unsigned short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:470:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned short>::operator unsigned short' requested here
  470 | __TBB_DECL_ATOMIC(unsigned short)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile short' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<short>::converter<const volatile short>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile short]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:471:1: note: in instantiation of member function 'tbb::internal::atomic_impl<short>::operator short' requested here
  471 | __TBB_DECL_ATOMIC(short)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<char>::converter<const volatile char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:472:1: note: in instantiation of member function 'tbb::internal::atomic_impl<char>::operator char' requested here
  472 | __TBB_DECL_ATOMIC(char)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile signed char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<signed char>::converter<const volatile signed char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile signed char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:473:1: note: in instantiation of member function 'tbb::internal::atomic_impl<signed char>::operator signed char' requested here
  473 | __TBB_DECL_ATOMIC(signed char)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile unsigned char' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<unsigned char>::converter<const volatile unsigned char>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile unsigned char]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:474:1: note: in instantiation of member function 'tbb::internal::atomic_impl<unsigned char>::operator unsigned char' requested here
  474 | __TBB_DECL_ATOMIC(unsigned char)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile wchar_t' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<wchar_t>::converter<const volatile wchar_t>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile wchar_t]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:477:1: note: in instantiation of member function 'tbb::internal::atomic_impl<wchar_t>::operator wchar_t' requested here
  477 | __TBB_DECL_ATOMIC(wchar_t)
      | ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:422:78: note: expanded from macro '__TBB_DECL_ATOMIC'
  422 |             atomic<T>& operator=( const atomic<T>& rhs ) {store_with_release(rhs); return *this;}   \
      |                                                                              ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'void *const volatile' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<void *>::converter<void *const volatile>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = void *const volatile]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:509:34: note: in instantiation of member function 'tbb::internal::atomic_impl<void *>::operator void *' requested here
  509 |         this->store_with_release(rhs); return *this;
      |                                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:226:18: warning: volatile-qualified parameter type 'const volatile bool' is deprecated [-Wdeprecated-volatile]
  226 |         converter(value_type a_value) : value(a_value) {}
      |                  ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:255:21: note: in instantiation of template class 'tbb::internal::atomic_impl<bool>::converter<const volatile bool>' requested here
  255 |     static typename converter<value_t>::bits_type & to_bits_ref(value_t& value){
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/../atomic.h:297:42: note: while substituting deduced template arguments into function template 'to_bits_ref' [with value_t = const volatile bool]
  297 |                 __TBB_load_with_acquire( to_bits_ref(my_storage.my_value) )
      |                                          ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/partitioner.h:140:16: note: in instantiation of member function 'tbb::internal::atomic_impl<bool>::operator bool' requested here
  140 |         return static_cast<flag_task*>(t.parent())->my_child_stolen;
      |                ^
14 warnings generated.
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c multinomCI.cpp -o multinomCI.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c probabilistic.cpp -o probabilistic.o
clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c utils.cpp -o utils.o
clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o markovchain.so RcppExports.o classesAndMethods.o ctmcClassesAndMethods.o ctmcFittingFunctions.o ctmcProbabilistic.o fitHigherOrder.o fittingFunctions.o multinomCI.o probabilistic.o utils.o -llapack -L/home/hornik/tmp/R-d-clang-21/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R-d-clang-21/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/markovchain.Rcheck/00LOCK-markovchain/00new/markovchain/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘sort’ in package ‘markovchain’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (markovchain)